AT5G16800

Histone acetyltransferase MCC1-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
5524273 .. 5526597
2325 bp
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UTR
Exon/CDS
Intron
AT5G16800.1

Sequence Viewer

Length: 711 bp
ATGTCGCGTTTTCCCCGTGGATTTGTGGAGAATTCATCAATGGAGGAACCCAAAATCGCTCGTCGTCCAACTATTTGCTTCAGACCAATAAACCCTTCTGATTTAGAACGTTTGGAGCAAATCCATCGTGACATATTCCCAATCAGGTATGAGTCTGAGTTTTTTCAGAATGTTGTCAACGGAGGTGATATTGTCTCTTGGGCTGCTGTTGATCGGAGTCGCCCTGATGGTCATTCTGAGGAACTTATTGGATTTGTTACTGCCAAAATCGTACTTGCCAAAGAAAGCGAAATATCAGATCTAATAAGATATGACTCGTCGAAGGGAGAGGGGACATTGGTGTACATCCTAACACTTGGAGTTGTAGAAACATACAGAAAACGTGGAATCGCTAAGGCACTTATTAACGAGGTCGTCAAATACTCTTCTGGTATCCCTGTGTGCCGTGGTGTTTACCTTCACGTGATTGCACACAACAATCCCGCAATCCGGTTGTACAAAAGAATGTCTTTCAGATGTGTAAGGAGGTTACACGGATTCTACTTAATCAACGGCCAGCATTTCGATTCTTACTTGTTCGTCTACTTTATCAACGGTTCTCGCTCTCCTTGCTCACCCTTGTATGTACAAAACACAAGTATTTTTTGCATTCTAAATTCTGTTTGCTGTGATGTTTCTTTGCGGTTTCTTCATAGATGGGGTTATCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

236

Amino Acids

27.2

Weight (kDa)

9.19

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 38 - 171 4.7e-13 Acetyltransferase (GNAT) family
Acetyltransf_7 PF13508 97 - 172 1.4e-07 Acetyltransferase (GNAT) domain
Acetyltransf_4 PF13420 120 - 191 9.1e-07 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 582
AccII CGCG 1 cut(s) 7
AciI CCGC 2 cut(s) 483, 682
AclI AACGTT 1 cut(s) 109
AcoI YGGCCR 1 cut(s) 553
AcsI RAATTY 2 cut(s) 31, 655
AcuI CTGAAG 1 cut(s) 64
AcvI CACGTG 1 cut(s) 463
AfaI GTAC 4 cut(s) 273, 344, 497, 627
AfiI CCNNNNNNNGG 1 cut(s) 489
AjuI GAANNNNNNNTTGG 2 cut(s) 79, 111
Alw26I GTCTC 1 cut(s) 199
AoxI GGCC 1 cut(s) 553
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 2 cut(s) 31, 655
AsuHPI GGTGA 2 cut(s) 197, 606
BbrPI CACGTG 1 cut(s) 463
BbvI GCAGC 1 cut(s) 190
BccI CCATC 3 cut(s) 132, 221, 690
BceAI ACGGC 2 cut(s) 429, 568
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BciVI GTATCC 1 cut(s) 443
BcoDI GTCTC 1 cut(s) 199
BfuI GTATCC 1 cut(s) 443
BglII AGATCT 1 cut(s) 298
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 48
Bpu10I CCTNAGC 1 cut(s) 393
BsaAI YACGTR 1 cut(s) 463
BsaJI CCNNGG 2 cut(s) 16, 445
BsaWI WCCGGW 1 cut(s) 489
Bsc4I CCNNNNNNNGG 1 cut(s) 489
BseDI CCNNGG 2 cut(s) 16, 445
BseGI GGATG 1 cut(s) 345
BseLI CCNNNNNNNGG 1 cut(s) 489
BseMII CTCAG 2 cut(s) 147, 228
BseXI GCAGC 1 cut(s) 190
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 1 cut(s) 555
BsiSI CCGG 1 cut(s) 490
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 489
BsmAI GTCTC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 346
BsmI GAATGC 1 cut(s) 648
BsnI GGCC 1 cut(s) 555
Bsp1407I TGTACA 3 cut(s) 342, 495, 625
Bsp143I GATC 2 cut(s) 211, 298
BspACI CCGC 2 cut(s) 483, 682
BspANI GGCC 1 cut(s) 555
BspCNI CTCAG 2 cut(s) 148, 229
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 48
BsrGI TGTACA 3 cut(s) 342, 495, 625
BssECI CCNNGG 2 cut(s) 16, 445
BssMI GATC 2 cut(s) 211, 298
Bst4CI ACNGT 1 cut(s) 596
Bst6I CTCTTC 1 cut(s) 430
BstAUI TGTACA 3 cut(s) 342, 495, 625
BstBAI YACGTR 1 cut(s) 463
BstC8I GCNNGC 1 cut(s) 557
BstDEI CTNAG 3 cut(s) 156, 237, 393
BstDSI CCRYGG 2 cut(s) 16, 445
BstF5I GGATG 1 cut(s) 345
BstFNI CGCG 1 cut(s) 7
BstKTI GATC 2 cut(s) 214, 301
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 2 cut(s) 211, 298
BstMWI GCNNNNNNNGC 1 cut(s) 609
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BsuI GTATCC 1 cut(s) 443
BsuRI GGCC 1 cut(s) 555
BtgI CCRYGG 2 cut(s) 16, 445
BtsCI GGATG 1 cut(s) 345
Cac8I GCNNGC 1 cut(s) 557
Csp6I GTAC 4 cut(s) 272, 343, 496, 626
CviJI RGCY 2 cut(s) 203, 555
CviKI_1 RGCY 2 cut(s) 203, 555
CviQI GTAC 4 cut(s) 272, 343, 496, 626
DdeI CTNAG 3 cut(s) 156, 237, 393
DpnI GATC 2 cut(s) 213, 300
DpnII GATC 2 cut(s) 211, 298
EaeI YGGCCR 1 cut(s) 553
Eam1104I CTCTTC 1 cut(s) 430
EarI CTCTTC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 64
Eco72I CACGTG 1 cut(s) 463
EcoRI GAATTC 1 cut(s) 31
FaiI YATR 6 cut(s) 134, 150, 312, 373, 624, 693
FalI AAGNNNNNCTT 2 cut(s) 493, 525
FaqI GGGAC 1 cut(s) 346
FauI CCCGC 1 cut(s) 490
FblI GTMKAC 1 cut(s) 582
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 1 cut(s) 332
Fsp4HI GCNGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 204
HaeIII GGCC 1 cut(s) 555
HapII CCGG 1 cut(s) 490
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 6 cut(s) 152, 217, 314, 387, 537, 566
HpaII CCGG 1 cut(s) 490
HphI GGTGA 2 cut(s) 197, 606
Hpy166II GTNNAC 4 cut(s) 178, 343, 454, 583
Hpy188I TCNGA 8 cut(s) 83, 100, 157, 168, 216, 238, 298, 515
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 4 cut(s) 178, 343, 454, 583
Hpy99I CGWCG 2 cut(s) 66, 322
HpyAV CCTTC 3 cut(s) 105, 316, 467
HpyCH4III ACNGT 1 cut(s) 596
HpyCH4IV ACGT 3 cut(s) 109, 382, 462
HpyCH4V TGCA 2 cut(s) 470, 648
HpyF10VI GCNNNNNNNGC 1 cut(s) 609
HpyF3I CTNAG 3 cut(s) 156, 237, 393
HpySE526I ACGT 3 cut(s) 109, 382, 462
Kzo9I GATC 2 cut(s) 211, 298
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 6 cut(s) 130, 237, 414, 450, 503, 569
Lsp1109I GCAGC 1 cut(s) 190
MaeII ACGT 3 cut(s) 109, 382, 462
MaeIII GTNAC 3 cut(s) 128, 256, 528
MalI GATC 2 cut(s) 213, 300
MboI GATC 2 cut(s) 211, 298
MboII GAAGA 2 cut(s) 417, 680
MflI RGATCY 1 cut(s) 298
MluCI AATT 2 cut(s) 31, 655
MlyI GAGTC 3 cut(s) 161, 226, 308
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 6 cut(s) 37, 176, 232, 322, 403, 519
MseI TTAA 2 cut(s) 405, 545
MspI CCGG 1 cut(s) 490
Mva1269I GAATGC 1 cut(s) 648
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 609
NdeII GATC 2 cut(s) 211, 298
NlaIV GGNNCC 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 128
PctI GAATGC 1 cut(s) 648
PfeI GAWTC 3 cut(s) 387, 537, 566
PkrI GCNGC 1 cut(s) 205
PleI GAGTC 3 cut(s) 160, 225, 308
PmaCI CACGTG 1 cut(s) 463
PmlI CACGTG 1 cut(s) 463
PpsI GAGTC 3 cut(s) 160, 225, 308
Ppu21I YACGTR 1 cut(s) 463
Psp1406I AACGTT 1 cut(s) 109
PspCI CACGTG 1 cut(s) 463
PspN4I GGNNCC 1 cut(s) 48
PsuI RGATCY 1 cut(s) 298
RsaI GTAC 4 cut(s) 273, 344, 497, 627
RsaNI GTAC 4 cut(s) 272, 343, 496, 626
SaqAI TTAA 2 cut(s) 405, 545
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 2 cut(s) 211, 298
SchI GAGTC 3 cut(s) 161, 226, 308
SetI ASST 8 cut(s) 112, 149, 187, 385, 414, 459, 465, 530
Sse9I AATT 2 cut(s) 31, 655
SsiI CCGC 2 cut(s) 483, 682
TaaI ACNGT 1 cut(s) 596
TaiI ACGT 3 cut(s) 112, 385, 465
TaqI TCGA 2 cut(s) 320, 564
TasI AATT 2 cut(s) 31, 655
TatI WGTACW 3 cut(s) 342, 495, 625
TfiI GAWTC 3 cut(s) 387, 537, 566
Tru1I TTAA 2 cut(s) 405, 545
Tru9I TTAA 2 cut(s) 405, 545
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 2 cut(s) 24, 680
TspGWI ACGGA 2 cut(s) 195, 549
XapI RAATTY 2 cut(s) 31, 655
XmiI GTMKAC 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.