Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009154

Physical Location & Seq

Genomic Coordinates Forward (+)

21396551 .. 21398416

Gene Structure 1866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g24490.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTGGCATAAATGGAAGGAGAAGTTCATGAGCAAATTATCCAAGTATATCAAGTATTTGCTGGGGATTGACAACACTATCCCAATGGTGAACCCAAAACTTCCCCGTCGTCCAGCAATATCCTATAGGCCTATACAACCGTCTGACCTTGAGATCTTAGAGAAAATCCATGACGATTTATTTCCCATTAGGAGGCTGAGTTTTTCCAAAATGTCGTCAATGGACATGTTATTGTGTCATGGGCAGCTGTTCGATCGAAGTCGTCCAAATGGTCAAAGTGATGAACTTATTGGATTTGTAACCACACGAATTGTTCTTGCAAGAGAAAGTGAGATAGGGGATTTTCTCAGTTTCGACTCATCAAATTCAGATCAGACGTTAGTCTACATTTTGACACTGGGAGTAGTAGAATCTTTCAGAAATCTTGGCATAGCTTCAGCACTTATTCGGGAGGTCATAAAATATGCCTCAAGTATTCCAACCTGCAGAGCAATTTACTTGCATGTCATTTCTTACAATAATTCTGCAATCCATTTGTACAAGAAAATGTCATTCATGTGTGTCAGAAGGTTGCAAGGCTTTTACTTGATCGATCGGCAGCATTATGATTCATATCTGTTTGTGTACTATGTAAATGGTGGCCGATCTCCTTGCTCGCCATTGGAGCTGGTTGCAGGGACGCTGAATTTTATGAGGAATGGTCTTAAGTCTGTGTTTGCAATGCTACGGAAGAACGAAGACAGGAAGGTGTCAAAGTGGGCAAAATGTAAAGAAAACCATAGCCTTATATCGACGGGACCAAACAGGAGAAACCTGACTGCAGCAGAGTGTACAGGGTACGAGTGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0017196 GO:0018193 GO:0018205 GO:0018206 GO:0018393 GO:0018394 GO:0019538 GO:0022414 GO:0022607 GO:0031365 GO:0031497 GO:0034212 GO:0034622 GO:0034728 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051321 GO:0051604 GO:0061733 GO:0065003 GO:0065004 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

284

Amino Acids

32.62

Weight (kDa)

9.43

Isoelectric Point (pI)

53.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02980 AT3G02980 AT5G16800 AT5G16800 AT5G16800
fragaria_vesca	FvH4_7g34080 FvH4_7g34080
malus_domestica	MD01G1237100.v1.1 MD07G1309700.v1.1
prunus_persica	Prupe.2G327400_v2.0.a1
pyrus_communis	pycom01g24490
rosa_chinensis	RchiOBHm_Chr1g0384361
rosa_laevigata	RLG00000026045
rosa_multiflora	Rmu_sc0016737.1_g000007
rosa_roxburghii	Rroxscaffold_4G00276740
rosa_rugosa	Rorug01G0447000 Rorug01G0447000 Rorug01G0447100 Rorug01G0447200 Rorug01G0447200
rosa_samantha	Rh1CG443200
rosa_wichuraiana	Rw1G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	491
AccI	GTMKAC	1 cut(s)	384
AcoI	YGGCCR	1 cut(s)	640
AcsI	RAATTY	2 cut(s)	364, 685
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	4 cut(s)	539, 626, 832, 839
AfiI	CCNNNNNNNGG	1 cut(s)	192
AflII	CTTAAG	1 cut(s)	704
AflIII	ACRYGT	1 cut(s)	225
AluBI	AGCT	3 cut(s)	247, 434, 667
AluI	AGCT	3 cut(s)	247, 434, 667
AoxI	GGCC	2 cut(s)	128, 640
ApeKI	GCWGC	3 cut(s)	244, 598, 821
ApoI	RAATTY	2 cut(s)	364, 685
AspS9I	GGNCC	1 cut(s)	797
AsuHPI	GGTGA	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	797
BaeI	ACNNNNGTAYC	1 cut(s)	829
BbsI	GAAGAC	1 cut(s)	744
BbvI	GCAGC	3 cut(s)	256, 610, 833
BcgI	CGANNNNNNTGC	2 cut(s)	633, 667
BfmI	CTRYAG	3 cut(s)	124, 484, 819
BfrI	CTTAAG	1 cut(s)	704
BfuAI	ACCTGC	1 cut(s)	491
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	3 cut(s)	245, 599, 822
BlsI	GCNGC	3 cut(s)	246, 600, 823
Bme18I	GGWCC	1 cut(s)	797
BmgT120I	GGNCC	1 cut(s)	797
BmiI	GGNNCC	1 cut(s)	798
BmrI	ACTGGG	1 cut(s)	407
BmuI	ACTGGG	1 cut(s)	407
BoxI	GACNNNNGTC	1 cut(s)	380
BpiI	GAAGAC	1 cut(s)	744
BpuEI	CTTGAG	2 cut(s)	170, 454
Bsa29I	ATCGAT	1 cut(s)	591
BsaBI	GATNNNNATC	1 cut(s)	612
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse1I	ACTGG	1 cut(s)	402
Bse3DI	GCAATG	1 cut(s)	726
Bse8I	GATNNNNATC	1 cut(s)	612
BseCI	ATCGAT	1 cut(s)	591
BseJI	GATNNNNATC	1 cut(s)	612
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMI	GCAATG	1 cut(s)	726
BseMII	CTCAG	2 cut(s)	188, 361
BseNI	ACTGG	1 cut(s)	402
BseXI	GCAGC	3 cut(s)	256, 610, 833
BseYI	CCCAGC	1 cut(s)	61
Bsh1285I	CGRYCG	2 cut(s)	256, 595
BshFI	GGCC	2 cut(s)	130, 642
BshVI	ATCGAT	1 cut(s)	591
BsiEI	CGRYCG	2 cut(s)	256, 595
BslFI	GGGAC	2 cut(s)	691, 810
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmFI	GGGAC	2 cut(s)	691, 810
BsnI	GGCC	2 cut(s)	130, 642
Bsp1407I	TGTACA	2 cut(s)	537, 830
Bsp143I	GATC	6 cut(s)	153, 253, 370, 588, 592, 644
BspANI	GGCC	2 cut(s)	130, 642
BspCNI	CTCAG	2 cut(s)	189, 360
BspDI	ATCGAT	1 cut(s)	591
BspHI	TCATGA	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	798
BspMAI	CTGCAG	2 cut(s)	488, 823
BspMI	ACCTGC	1 cut(s)	491
BspTI	CTTAAG	1 cut(s)	704
BsrDI	GCAATG	1 cut(s)	726
BsrGI	TGTACA	2 cut(s)	537, 830
BsrI	ACTGG	1 cut(s)	402
BssMI	GATC	6 cut(s)	153, 253, 370, 588, 592, 644
Bst4CI	ACNGT	1 cut(s)	141
BstAFI	CTTAAG	1 cut(s)	704
BstAUI	TGTACA	2 cut(s)	537, 830
BstC8I	GCNNGC	1 cut(s)	656
BstDEI	CTNAG	3 cut(s)	157, 197, 347
BstKTI	GATC	6 cut(s)	156, 256, 373, 591, 595, 647
BstMBI	GATC	6 cut(s)	153, 253, 370, 588, 592, 644
BstMCI	CGRYCG	2 cut(s)	256, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	664
BstNSI	RCATGY	2 cut(s)	229, 506
BstPAI	GACNNNNGTC	1 cut(s)	380
BstSFI	CTRYAG	3 cut(s)	124, 484, 819
BstV1I	GCAGC	3 cut(s)	256, 610, 833
BstV2I	GAAGAC	1 cut(s)	744
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
Bsu15I	ATCGAT	1 cut(s)	591
BsuRI	GGCC	2 cut(s)	130, 642
BsuTUI	ATCGAT	1 cut(s)	591
BtsIMutI	CAGTG	1 cut(s)	395
BveI	ACCTGC	1 cut(s)	491
Cac8I	GCNNGC	1 cut(s)	656
CciI	TCATGA	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	797
ClaI	ATCGAT	1 cut(s)	591
CseI	GACGC	1 cut(s)	688
Csp6I	GTAC	4 cut(s)	538, 625, 831, 838
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	6 cut(s)	28, 170, 226, 239, 503, 556
CviJI	RGCY	8 cut(s)	130, 196, 247, 434, 579, 642, 667, 783
CviKI_1	RGCY	8 cut(s)	130, 196, 247, 434, 579, 642, 667, 783
CviQI	GTAC	4 cut(s)	538, 625, 831, 838
DdeI	CTNAG	3 cut(s)	157, 197, 347
DpnI	GATC	6 cut(s)	155, 255, 372, 590, 594, 646
DpnII	GATC	6 cut(s)	153, 253, 370, 588, 592, 644
EaeI	YGGCCR	1 cut(s)	640
Eco147I	AGGCCT	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	797
Eco57I	CTGAAG	1 cut(s)	420
FaeI	CATG	6 cut(s)	31, 173, 229, 242, 506, 559
FaqI	GGGAC	2 cut(s)	691, 810
FatI	CATG	6 cut(s)	27, 169, 225, 238, 502, 555
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	3 cut(s)	245, 599, 822
Fsp4HI	GCNGC	3 cut(s)	245, 599, 822
GluI	GCNGC	3 cut(s)	245, 599, 822
GsaI	CCCAGC	1 cut(s)	65
HaeIII	GGCC	2 cut(s)	130, 642
HgaI	GACGC	1 cut(s)	688
Hin1II	CATG	6 cut(s)	31, 173, 229, 242, 506, 559
HinfI	GANTC	3 cut(s)	356, 410, 608
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	4 cut(s)	91, 385, 625, 831
Hpy188I	TCNGA	5 cut(s)	145, 370, 375, 419, 566
Hpy188III	TCNNGA	2 cut(s)	28, 449
Hpy8I	GTNNAC	4 cut(s)	91, 385, 625, 831
Hpy99I	CGWCG	2 cut(s)	111, 796
HpyAV	CCTTC	3 cut(s)	10, 561, 739
HpyCH4III	ACNGT	1 cut(s)	141
HpyCH4IV	ACGT	1 cut(s)	377
HpyCH4V	TGCA	8 cut(s)	320, 486, 502, 527, 574, 674, 719, 821
HpyF10VI	GCNNNNNNNGC	1 cut(s)	664
HpyF3I	CTNAG	3 cut(s)	157, 197, 347
HpySE526I	ACGT	1 cut(s)	377
Hsp92II	CATG	6 cut(s)	31, 173, 229, 242, 506, 559
Kzo9I	GATC	6 cut(s)	153, 253, 370, 588, 592, 644
LmnI	GCTCC	1 cut(s)	664
Lsp1109I	GCAGC	3 cut(s)	256, 610, 833
MaeII	ACGT	1 cut(s)	377
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	6 cut(s)	155, 255, 372, 590, 594, 646
MboI	GATC	6 cut(s)	153, 253, 370, 588, 592, 644
MboII	GAAGA	2 cut(s)	742, 749
MflI	RGATCY	1 cut(s)	153
MluCI	AATT	6 cut(s)	35, 309, 364, 492, 520, 685
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	503
MnlI	CCTC	4 cut(s)	186, 445, 478, 687
MseI	TTAA	1 cut(s)	705
MslI	CAYNNNNRTG	1 cut(s)	556
MspA1I	CMGCKG	1 cut(s)	247
MspCI	CTTAAG	1 cut(s)	704
MwoI	GCNNNNNNNGC	1 cut(s)	664
NdeII	GATC	6 cut(s)	153, 253, 370, 588, 592, 644
NlaIII	CATG	6 cut(s)	31, 173, 229, 242, 506, 559
NlaIV	GGNNCC	1 cut(s)	798
NspI	RCATGY	2 cut(s)	229, 506
PagI	TCATGA	1 cut(s)	27
PceI	AGGCCT	1 cut(s)	130
PciI	ACATGT	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	410, 608
PkrI	GCNGC	3 cut(s)	246, 600, 823
Ple19I	CGATCG	2 cut(s)	256, 595
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PscI	ACATGT	1 cut(s)	225
PshAI	GACNNNNGTC	1 cut(s)	380
PspFI	CCCAGC	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	798
PspPI	GGNCC	1 cut(s)	797
PstI	CTGCAG	2 cut(s)	488, 823
PsuI	RGATCY	1 cut(s)	153
PvuI	CGATCG	2 cut(s)	256, 595
PvuII	CAGCTG	1 cut(s)	247
RsaI	GTAC	4 cut(s)	539, 626, 832, 839
RsaNI	GTAC	4 cut(s)	538, 625, 831, 838
RseI	CAYNNNNRTG	1 cut(s)	556
SaqAI	TTAA	1 cut(s)	705
SatI	GCNGC	3 cut(s)	245, 599, 822
Sau3AI	GATC	6 cut(s)	153, 253, 370, 588, 592, 644
Sau96I	GGNCC	1 cut(s)	797
SchI	GAGTC	1 cut(s)	350
SfcI	CTRYAG	3 cut(s)	124, 484, 819
SinI	GGWCC	1 cut(s)	797
SmiMI	CAYNNNNRTG	1 cut(s)	556
SmlI	CTYRAG	3 cut(s)	149, 469, 704
SmoI	CTYRAG	3 cut(s)	149, 469, 704
Sse9I	AATT	6 cut(s)	35, 309, 364, 492, 520, 685
SseBI	AGGCCT	1 cut(s)	130
StuI	AGGCCT	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	141
TaiI	ACGT	1 cut(s)	380
TaqI	TCGA	5 cut(s)	252, 256, 354, 591, 791
TasI	AATT	6 cut(s)	35, 309, 364, 492, 520, 685
TatI	WGTACW	3 cut(s)	537, 624, 830
TfiI	GAWTC	2 cut(s)	410, 608
Tru1I	TTAA	1 cut(s)	705
Tru9I	TTAA	1 cut(s)	705
TscAI	CASTG	1 cut(s)	402
TseI	GCWGC	3 cut(s)	244, 598, 821
TspDTI	ATGAA	4 cut(s)	16, 297, 544, 600
TspGWI	ACGGA	1 cut(s)	742
TspRI	CASTG	1 cut(s)	402
Vha464I	CTTAAG	1 cut(s)	704
VpaK11BI	GGWCC	1 cut(s)	797
XapI	RAATTY	2 cut(s)	364, 685
XceI	RCATGY	2 cut(s)	229, 506
XmiI	GTMKAC	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.