Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009154

Physical Location & Seq

Genomic Coordinates Forward (+)

24083151 .. 24086556

Gene Structure 3406 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g34080.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAAGTTCATGTGCAAATTCTCCAAGTATATCCAACATTTGCAGGGGATTGACCACACTATGCCAATGGTGAACCCAAATCCTCCCCATCGTTCAACCATATGTTATAGGCCCATACAACCAGCTGACCTTGAGATCTTGGAGCAAATCCATACTGATTTATTTCCCATCAGGTATGAGTCCGAGTTTTTTCAAAATGTAGTAAATGGACATGATATTGTGTCATGGGCAGCTGTTGATCGAAGTCGTCCAAATGGTCAAAGTGATGAACTTATTGGATTTGTAACTGCTCGAATTGTCCTTGCAAAAGAAAGTGAGATAGGGGATTTGCTCAATTACGACCCATCAAAACCAGATCAGACCTTAGTCTACATTCTGACGCTAGGAGTTGTAGAATCTTTCAGAAATCTTGGCATAGCTTCTGCACTTATTCGTGAGGTCATAAAATATGCCTCAAGTATTCCGACCTGCAGGGCAGTTTACCTGCATGTCATTTCTTACAATAATCCTGCAATCCTTTTGTACAAGAAAATGTCATTCAAGTGTGTAAGAAGATTGCAAGACTTTTACTTGATCAATGGTCAGCATTATGATTCTTATCTGTTTGTTTACTATGTAAACGGCGGTAGATCTCCTTGCTCACCATTAGAGTTTGTTACAGCGACACTGAATCACATGAGGAATGGTTTAAAGTTGGTGTTTGGAAGACTCCGGAAGAATGAAGATAGGAAGTTGGTCTCAAAATGGTCGAAATGTAAAGAGAGCCATTGCCTTATAACAACAACACAAAGCAGGAAAAACCTGACAGCAGAATGTACAGGGTATGAATGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0017196 GO:0018193 GO:0018205 GO:0018206 GO:0018393 GO:0018394 GO:0019538 GO:0022414 GO:0022607 GO:0031365 GO:0031497 GO:0034212 GO:0034622 GO:0034728 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051321 GO:0051604 GO:0061733 GO:0065003 GO:0065004 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

279

Amino Acids

31.94

Weight (kDa)

8.87

Isoelectric Point (pI)

46.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	57 - 186	6.2e-13	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	97 - 187	5.1e-06	Acetyltransferase (GNAT) domain
Acetyltransf_4	PF13420	132 - 206	4.5e-07	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02980 AT3G02980 AT5G16800 AT5G16800 AT5G16800
fragaria_vesca	FvH4_7g34080 FvH4_7g34080
malus_domestica	MD01G1237100.v1.1 MD07G1309700.v1.1
prunus_persica	Prupe.2G327400_v2.0.a1
pyrus_communis	pycom01g24490
rosa_chinensis	RchiOBHm_Chr1g0384361
rosa_laevigata	RLG00000026045
rosa_multiflora	Rmu_sc0016737.1_g000007
rosa_roxburghii	Rroxscaffold_4G00276740
rosa_rugosa	Rorug01G0447000 Rorug01G0447000 Rorug01G0447100 Rorug01G0447200 Rorug01G0447200
rosa_samantha	Rh1CG443200
rosa_wichuraiana	Rw1G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	776
Acc36I	ACCTGC	2 cut(s)	476, 492
AccI	GTMKAC	1 cut(s)	369
AccIII	TCCGGA	1 cut(s)	711
AciI	CCGC	1 cut(s)	624
AcsI	RAATTY	1 cut(s)	17
AfaI	GTAC	2 cut(s)	524, 817
AgsI	TTSAA	3 cut(s)	96, 194, 541
AluBI	AGCT	3 cut(s)	125, 233, 419
AluI	AGCT	3 cut(s)	125, 233, 419
Alw26I	GTCTC	1 cut(s)	742
Aor13HI	TCCGGA	1 cut(s)	711
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	111
AsuHPI	GGTGA	2 cut(s)	82, 633
BbsI	GAAGAC	1 cut(s)	712
BbvI	GCAGC	1 cut(s)	242
BccI	CCATC	3 cut(s)	96, 176, 352
BceAI	ACGGC	1 cut(s)	637
BclI	TGATCA	1 cut(s)	573
BcoDI	GTCTC	1 cut(s)	742
BfaI	CTAG	1 cut(s)	383
BfmI	CTRYAG	1 cut(s)	469
BfuAI	ACCTGC	2 cut(s)	476, 492
BglII	AGATCT	2 cut(s)	135, 629
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	111
BoxI	GACNNNNGTC	1 cut(s)	365
BpiI	GAAGAC	1 cut(s)	712
BpuEI	CTTGAG	2 cut(s)	152, 439
BsaBI	GATNNNNATC	1 cut(s)	597
BsaI	GGTCTC	1 cut(s)	742
BsaWI	WCCGGW	1 cut(s)	711
Bse3DI	GCAATG	1 cut(s)	766
Bse8I	GATNNNNATC	1 cut(s)	597
BseAI	TCCGGA	1 cut(s)	711
BseJI	GATNNNNATC	1 cut(s)	597
BseMI	GCAATG	1 cut(s)	766
BseXI	GCAGC	1 cut(s)	242
BsgI	GTGCAG	1 cut(s)	408
BshFI	GGCC	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	712
BsmAI	GTCTC	1 cut(s)	742
BsnI	GGCC	1 cut(s)	112
Bso31I	GGTCTC	1 cut(s)	742
Bsp13I	TCCGGA	1 cut(s)	711
Bsp1407I	TGTACA	2 cut(s)	522, 815
Bsp143I	GATC	5 cut(s)	135, 238, 355, 573, 629
BspACI	CCGC	1 cut(s)	624
BspANI	GGCC	1 cut(s)	112
BspEI	TCCGGA	1 cut(s)	711
BspMAI	CTGCAG	1 cut(s)	473
BspMI	ACCTGC	2 cut(s)	476, 492
BspTNI	GGTCTC	1 cut(s)	742
BsrDI	GCAATG	1 cut(s)	766
BsrGI	TGTACA	2 cut(s)	522, 815
BssMI	GATC	5 cut(s)	135, 238, 355, 573, 629
BstAUI	TGTACA	2 cut(s)	522, 815
BstDEI	CTNAG	1 cut(s)	364
BstKTI	GATC	5 cut(s)	138, 241, 358, 576, 632
BstMAI	GTCTC	1 cut(s)	742
BstMBI	GATC	5 cut(s)	135, 238, 355, 573, 629
BstNSI	RCATGY	1 cut(s)	491
BstPAI	GACNNNNGTC	1 cut(s)	365
BstSFI	CTRYAG	1 cut(s)	469
BstV1I	GCAGC	1 cut(s)	242
BstV2I	GAAGAC	1 cut(s)	712
BstX2I	RGATCY	2 cut(s)	135, 629
BstYI	RGATCY	2 cut(s)	135, 629
BsuRI	GGCC	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	665
BveI	ACCTGC	2 cut(s)	476, 492
Cfr13I	GGNCC	1 cut(s)	111
CseI	GACGC	1 cut(s)	388
Csp6I	GTAC	2 cut(s)	523, 816
CviAII	CATG	5 cut(s)	10, 212, 225, 488, 676
CviJI	RGCY	5 cut(s)	112, 125, 233, 419, 765
CviKI_1	RGCY	5 cut(s)	112, 125, 233, 419, 765
CviQI	GTAC	2 cut(s)	523, 816
DdeI	CTNAG	1 cut(s)	364
DpnI	GATC	5 cut(s)	137, 240, 357, 575, 631
DpnII	GATC	5 cut(s)	135, 238, 355, 573, 629
DraI	TTTAAA	1 cut(s)	690
Eco31I	GGTCTC	1 cut(s)	742
FaeI	CATG	5 cut(s)	13, 215, 228, 491, 679
FatI	CATG	5 cut(s)	9, 211, 224, 487, 675
FauNDI	CATATG	1 cut(s)	101
FbaI	TGATCA	1 cut(s)	573
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	383
GluI	GCNGC	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	112
HapII	CCGG	1 cut(s)	712
HgaI	GACGC	1 cut(s)	388
Hin1II	CATG	5 cut(s)	13, 215, 228, 491, 679
HinfI	GANTC	5 cut(s)	179, 395, 593, 670, 708
HpaII	CCGG	1 cut(s)	712
HphI	GGTGA	2 cut(s)	82, 633
Hpy166II	GTNNAC	5 cut(s)	73, 370, 481, 610, 619
Hpy188I	TCNGA	5 cut(s)	184, 360, 378, 404, 465
Hpy188III	TCNNGA	2 cut(s)	434, 712
Hpy8I	GTNNAC	5 cut(s)	73, 370, 481, 610, 619
HpyCH4V	TGCA	8 cut(s)	15, 43, 305, 425, 471, 487, 512, 559
HpyF3I	CTNAG	1 cut(s)	364
Hsp92II	CATG	5 cut(s)	13, 215, 228, 491, 679
Kpn2I	TCCGGA	1 cut(s)	711
Ksp22I	TGATCA	1 cut(s)	573
Kzo9I	GATC	5 cut(s)	135, 238, 355, 573, 629
LmnI	GCTCC	1 cut(s)	142
Lsp1109I	GCAGC	1 cut(s)	242
MaeI	CTAG	1 cut(s)	383
MaeIII	GTNAC	2 cut(s)	283, 655
MalI	GATC	5 cut(s)	137, 240, 357, 575, 631
MboI	GATC	5 cut(s)	135, 238, 355, 573, 629
MboII	GAAGA	4 cut(s)	564, 717, 727, 734
MflI	RGATCY	2 cut(s)	135, 629
MluCI	AATT	3 cut(s)	17, 294, 334
MlyI	GAGTC	2 cut(s)	188, 702
MmeI	TCCRAC	2 cut(s)	58, 488
MnlI	CCTC	4 cut(s)	93, 430, 463, 672
MroI	TCCGGA	1 cut(s)	711
MseI	TTAA	1 cut(s)	689
MslI	CAYNNNNRTG	1 cut(s)	541
MspA1I	CMGCKG	2 cut(s)	125, 233
MspI	CCGG	1 cut(s)	712
NdeI	CATATG	1 cut(s)	101
NdeII	GATC	5 cut(s)	135, 238, 355, 573, 629
NlaIII	CATG	5 cut(s)	13, 215, 228, 491, 679
NspI	RCATGY	1 cut(s)	491
PfeI	GAWTC	3 cut(s)	395, 593, 670
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	2 cut(s)	187, 702
PpsI	GAGTC	2 cut(s)	187, 702
PshAI	GACNNNNGTC	1 cut(s)	365
PsiI	TTATAA	1 cut(s)	776
PspPI	GGNCC	1 cut(s)	111
PstI	CTGCAG	1 cut(s)	473
PsuI	RGATCY	2 cut(s)	135, 629
PvuII	CAGCTG	2 cut(s)	125, 233
RsaI	GTAC	2 cut(s)	524, 817
RsaNI	GTAC	2 cut(s)	523, 816
RseI	CAYNNNNRTG	1 cut(s)	541
SaqAI	TTAA	1 cut(s)	689
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	5 cut(s)	135, 238, 355, 573, 629
Sau96I	GGNCC	1 cut(s)	111
SbfI	CCTGCAGG	1 cut(s)	473
SchI	GAGTC	2 cut(s)	188, 702
SdaI	CCTGCAGG	1 cut(s)	473
SfcI	CTRYAG	1 cut(s)	469
SmiMI	CAYNNNNRTG	1 cut(s)	541
SmlI	CTYRAG	2 cut(s)	131, 454
SmoI	CTYRAG	2 cut(s)	131, 454
Sse8387I	CCTGCAGG	1 cut(s)	473
Sse9I	AATT	3 cut(s)	17, 294, 334
SsiI	CCGC	1 cut(s)	624
SspMI	CTAG	1 cut(s)	383
TaqI	TCGA	3 cut(s)	241, 292, 749
TasI	AATT	3 cut(s)	17, 294, 334
TatI	WGTACW	2 cut(s)	522, 815
TfiI	GAWTC	3 cut(s)	395, 593, 670
Tru1I	TTAA	1 cut(s)	689
Tru9I	TTAA	1 cut(s)	689
TscAI	CASTG	1 cut(s)	672
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	3 cut(s)	17, 282, 735
TspRI	CASTG	1 cut(s)	672
XapI	RAATTY	1 cut(s)	17
XceI	RCATGY	1 cut(s)	491
XmiI	GTMKAC	1 cut(s)	369
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.