Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009154

Physical Location & Seq

Genomic Coordinates Forward (+)

54272453 .. 54274466

Gene Structure 2014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0447200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGGATCTTCCGCAAGTACTCCTCGTCATTCTCTGCTGATCGAATCTTTGCGGAATGCTGGGATAAAACCCTTAGAAACTACTGCCGCTTCCTGTTCTTGGACGTTGAACGACTATATAAATCAGAGTCATGTTTCCTCACGATGGCAGCAAAACGGTCGTCCCATTCCTTTGTGTATTGAATTCCTTAGGTCCATTATTGTTGAATTCGCTCGATTGGAGTCCATTGGAATAAAGCATGGATTCATCGGACCTGAGCATTTCGACATCGACGACGACGGCAGACTCAAGGTCGTCAAAATTCCACCACCTACTAGTCTAATGAGAGAAGTAACGGCCAGCGATAGGACATACAGGGAAGTAATTCGAGAAAATCTGGTTTTAAAATTACTTGGCGACCCAAACACGTATGGAGCTGAAGAGTACAGGCACTTTGTTCAAAGTATAACCTCAATAAATCTGTTTAAGAACCTGTGGTATCATCCTTCATTGCAGTCATCAATGGAAAAGTTCCATTTCCCCCTTGATGCCAAGATTTGGCTTAATTGCCATGATCTTTGTCGCGAGTGGAAAAATAAGTGGAGAAACATGTCCAACAAAGATAGGCCGTATTACAAATATACTATGGAAGAGCTGAAAGAGAAGATCGGAGCTTACTCAAACGGTTTTCTTCGTGTTGTTTTGGATATGGAAACGGAAACAAAAGAGAAAGAAAGACTTCATGAAATAAGAGCTGAGCAACGGCCGGAATATTTGAGAAAAGAGAAGAAGCAAAAGAATAGAGTTGACGTGGTCACAATATTTAAAATAGTAAGGAATATTACCATTCGCATAGTTGAGACGCTCAGGAAAGCTGGAGAAGAAGTTATGACTCAATTACAAGTCGTAAAAGCTCTTCAAGAATTATTCCCTGGGTTTCTCCTCGATTTGTATGATTTTCTTGTGCGCATTGACAATGCCAACTTGGGATTCCTGTATGTACCATCCATAACGGCCAGTCAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0017196 GO:0018193 GO:0018205 GO:0018206 GO:0018393 GO:0018394 GO:0019538 GO:0022414 GO:0022607 GO:0031365 GO:0031497 GO:0034212 GO:0034622 GO:0034728 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051321 GO:0051604 GO:0061733 GO:0065003 GO:0065004 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

335

Amino Acids

39.17

Weight (kDa)

8.85

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02980 AT3G02980 AT5G16800 AT5G16800 AT5G16800
fragaria_vesca	FvH4_7g34080 FvH4_7g34080
malus_domestica	MD01G1237100.v1.1 MD07G1309700.v1.1
prunus_persica	Prupe.2G327400_v2.0.a1
pyrus_communis	pycom01g24490
rosa_chinensis	RchiOBHm_Chr1g0384361
rosa_laevigata	RLG00000026045
rosa_multiflora	Rmu_sc0016737.1_g000007
rosa_roxburghii	Rroxscaffold_4G00276740
rosa_rugosa	Rorug01G0447000 Rorug01G0447000 Rorug01G0447100 Rorug01G0447200 Rorug01G0447200
rosa_samantha	Rh1CG443200
rosa_wichuraiana	Rw1G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	947
AccB7I	CCANNNNNTGG	1 cut(s)	537
AccII	CGCG	1 cut(s)	564
AciI	CCGC	3 cut(s)	12, 52, 87
AclWI	GGATC	1 cut(s)	13
AcoI	YGGCCR	3 cut(s)	336, 743, 993
AcsI	RAATTY	3 cut(s)	182, 206, 300
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	3 cut(s)	19, 425, 981
AfiI	CCNNNNNNNGG	4 cut(s)	99, 144, 345, 537
AflIII	ACRYGT	2 cut(s)	405, 588
AgsI	TTSAA	5 cut(s)	109, 182, 206, 440, 899
AhdI	GACNNNNNGTC	1 cut(s)	290
AhlI	ACTAGT	1 cut(s)	314
AjiI	CACGTC	1 cut(s)	790
AjnI	CCWGG	1 cut(s)	910
AjuI	GAANNNNNNNTTGG	2 cut(s)	953, 985
AluBI	AGCT	6 cut(s)	416, 634, 653, 734, 854, 893
AluI	AGCT	6 cut(s)	416, 634, 653, 734, 854, 893
Alw26I	GTCTC	1 cut(s)	833
AlwI	GGATC	1 cut(s)	13
AoxI	GGCC	4 cut(s)	336, 605, 743, 993
ApeKI	GCWGC	1 cut(s)	148
ApoI	RAATTY	3 cut(s)	182, 206, 300
ArsI	GACNNNNNNTTYG	2 cut(s)	145, 177
Asp700I	GAANNNNTTC	2 cut(s)	363, 717
AspLEI	GCGC	1 cut(s)	948
AspS9I	GGNCC	2 cut(s)	192, 251
AvaII	GGWCC	2 cut(s)	192, 251
AxyI	CCTNAGG	1 cut(s)	188
BarI	GAAGNNNNNNTAC	2 cut(s)	879, 911
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	2 cut(s)	138, 991
BceAI	ACGGC	4 cut(s)	295, 351, 592, 758
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciT130I	CCWGG	1 cut(s)	912
BcoDI	GTCTC	1 cut(s)	833
BcuI	ACTAGT	1 cut(s)	314
BfaI	CTAG	1 cut(s)	315
BisI	GCNGC	2 cut(s)	87, 149
BlpI	GCTNAGC	1 cut(s)	735
BlsI	GCNGC	2 cut(s)	88, 150
BmcAI	AGTACT	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	912
Bme18I	GGWCC	2 cut(s)	192, 251
BmeRI	GACNNNNNGTC	1 cut(s)	290
BmgBI	CACGTC	1 cut(s)	790
BmgT120I	GGNCC	2 cut(s)	192, 251
BmrFI	CCNGG	1 cut(s)	912
BmsI	GCATC	1 cut(s)	517
BpmI	CTGGAG	1 cut(s)	876
Bpu10I	CCTNAGC	2 cut(s)	255, 845
Bpu1102I	GCTNAGC	1 cut(s)	735
BpuEI	CTTGAG	1 cut(s)	272
BsaAI	YACGTR	1 cut(s)	408
BsaJI	CCNNGG	2 cut(s)	910, 911
BsaXI	ACNNNNNCTCC	2 cut(s)	849, 879
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 144, 345, 537
Bse1I	ACTGG	1 cut(s)	996
Bse21I	CCTNAGG	1 cut(s)	188
Bse3DI	GCAATG	1 cut(s)	488
BseBI	CCWGG	1 cut(s)	912
BseDI	CCNNGG	2 cut(s)	910, 911
BseGI	GGATG	2 cut(s)	481, 983
BseLI	CCNNNNNNNGG	4 cut(s)	99, 144, 345, 537
BseMI	GCAATG	1 cut(s)	488
BseMII	CTCAG	3 cut(s)	246, 726, 859
BseNI	ACTGG	1 cut(s)	996
BseRI	GAGGAG	2 cut(s)	12, 911
BseX3I	CGGCCG	1 cut(s)	743
BseXI	GCAGC	1 cut(s)	160
BseYI	CCCAGC	1 cut(s)	59
Bsh1236I	CGCG	1 cut(s)	564
Bsh1285I	CGRYCG	2 cut(s)	160, 746
BshFI	GGCC	4 cut(s)	338, 607, 745, 995
BsiEI	CGRYCG	2 cut(s)	160, 746
BsiSI	CCGG	1 cut(s)	746
BslFI	GGGAC	1 cut(s)	147
BslI	CCNNNNNNNGG	4 cut(s)	99, 144, 345, 537
BsmAI	GTCTC	1 cut(s)	833
BsmBI	CGTCTC	1 cut(s)	833
BsmFI	GGGAC	1 cut(s)	147
BsmI	GAATGC	1 cut(s)	61
BsnI	GGCC	4 cut(s)	338, 607, 745, 995
Bsp143I	GATC	4 cut(s)	5, 39, 553, 645
Bsp1720I	GCTNAGC	1 cut(s)	735
Bsp68I	TCGCGA	1 cut(s)	564
BspACI	CCGC	3 cut(s)	12, 52, 87
BspANI	GGCC	4 cut(s)	338, 607, 745, 995
BspCNI	CTCAG	3 cut(s)	247, 727, 858
BspFNI	CGCG	1 cut(s)	564
BspHI	TCATGA	1 cut(s)	721
BspPI	GGATC	1 cut(s)	13
BspQI	GCTCTTC	2 cut(s)	624, 900
BsrDI	GCAATG	1 cut(s)	488
BsrI	ACTGG	1 cut(s)	996
BssECI	CCNNGG	2 cut(s)	910, 911
BssMI	GATC	4 cut(s)	5, 39, 553, 645
Bst2UI	CCWGG	1 cut(s)	912
Bst4CI	ACNGT	2 cut(s)	158, 665
Bst6I	CTCTTC	3 cut(s)	414, 624, 900
BstBAI	YACGTR	1 cut(s)	408
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	5 cut(s)	73, 188, 255, 735, 845
BstF5I	GGATG	2 cut(s)	481, 983
BstFNI	CGCG	1 cut(s)	564
BstHHI	GCGC	1 cut(s)	948
BstKTI	GATC	4 cut(s)	8, 42, 556, 648
BstMAI	GTCTC	1 cut(s)	833
BstMBI	GATC	4 cut(s)	5, 39, 553, 645
BstMCI	CGRYCG	2 cut(s)	160, 746
BstNI	CCWGG	1 cut(s)	912
BstNSI	RCATGY	1 cut(s)	592
BstSCI	CCNGG	1 cut(s)	910
BstUI	CGCG	1 cut(s)	564
BstV1I	GCAGC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	5
BstYI	RGATCY	1 cut(s)	5
BstZI	CGGCCG	1 cut(s)	743
Bsu36I	CCTNAGG	1 cut(s)	188
BsuRI	GGCC	4 cut(s)	338, 607, 745, 995
BtrI	CACGTC	1 cut(s)	790
BtsCI	GGATG	2 cut(s)	481, 983
BtuMI	TCGCGA	1 cut(s)	564
Cac8I	GCNNGC	1 cut(s)	340
CciI	TCATGA	1 cut(s)	721
CfoI	GCGC	1 cut(s)	948
Cfr13I	GGNCC	2 cut(s)	192, 251
CseI	GACGC	1 cut(s)	850
Csp6I	GTAC	3 cut(s)	18, 424, 980
CviAII	CATG	5 cut(s)	131, 239, 551, 589, 722
CviQI	GTAC	3 cut(s)	18, 424, 980
DdeI	CTNAG	5 cut(s)	73, 188, 255, 735, 845
DpnI	GATC	4 cut(s)	7, 41, 555, 647
DpnII	GATC	4 cut(s)	5, 39, 553, 645
DraI	TTTAAA	2 cut(s)	384, 805
DriI	GACNNNNNGTC	1 cut(s)	290
EaeI	YGGCCR	3 cut(s)	336, 743, 993
EagI	CGGCCG	1 cut(s)	743
Eam1104I	CTCTTC	3 cut(s)	414, 624, 900
Eam1105I	GACNNNNNGTC	1 cut(s)	290
EarI	CTCTTC	3 cut(s)	414, 624, 900
EclXI	CGGCCG	1 cut(s)	743
Eco47I	GGWCC	2 cut(s)	192, 251
Eco52I	CGGCCG	1 cut(s)	743
Eco57I	CTGAAG	1 cut(s)	438
Eco81I	CCTNAGG	1 cut(s)	188
EcoRI	GAATTC	2 cut(s)	182, 206
EcoRII	CCWGG	1 cut(s)	910
Esp3I	CGTCTC	1 cut(s)	833
FaeI	CATG	5 cut(s)	134, 242, 554, 592, 725
FalI	AAGNNNNNCTT	2 cut(s)	702, 734
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	5 cut(s)	130, 238, 550, 588, 721
Fnu4HI	GCNGC	2 cut(s)	87, 149
FokI	GGATG	2 cut(s)	468, 970
Fsp4HI	GCNGC	2 cut(s)	87, 149
FspAI	RTGCGCAY	1 cut(s)	947
FspBI	CTAG	1 cut(s)	315
FspI	TGCGCA	1 cut(s)	947
GlaI	GCGC	1 cut(s)	947
GluI	GCNGC	2 cut(s)	87, 149
GsaI	CCCAGC	1 cut(s)	63
GsuI	CTGGAG	1 cut(s)	876
HaeIII	GGCC	4 cut(s)	338, 607, 745, 995
HapII	CCGG	1 cut(s)	746
HgaI	GACGC	1 cut(s)	850
HhaI	GCGC	1 cut(s)	948
Hin1II	CATG	5 cut(s)	134, 242, 554, 592, 725
Hin6I	GCGC	1 cut(s)	946
HinP1I	GCGC	1 cut(s)	946
HincII	GTYRAC	1 cut(s)	787
HindII	GTYRAC	1 cut(s)	787
HinfI	GANTC	7 cut(s)	44, 127, 221, 243, 285, 871, 969
HpaII	CCGG	1 cut(s)	746
Hpy166II	GTNNAC	1 cut(s)	787
Hpy188I	TCNGA	3 cut(s)	126, 251, 650
Hpy188III	TCNNGA	6 cut(s)	141, 368, 563, 722, 847, 899
Hpy8I	GTNNAC	1 cut(s)	787
Hpy99I	CGWCG	3 cut(s)	275, 278, 281
HpyAV	CCTTC	1 cut(s)	495
HpyCH4III	ACNGT	2 cut(s)	158, 665
HpyCH4IV	ACGT	3 cut(s)	104, 407, 789
HpyCH4V	TGCA	1 cut(s)	493
HpyF3I	CTNAG	5 cut(s)	73, 188, 255, 735, 845
HpySE526I	ACGT	3 cut(s)	104, 407, 789
Hsp92II	CATG	5 cut(s)	134, 242, 554, 592, 725
HspAI	GCGC	1 cut(s)	946
Kzo9I	GATC	4 cut(s)	5, 39, 553, 645
LguI	GCTCTTC	2 cut(s)	624, 900
LmnI	GCTCC	2 cut(s)	413, 650
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	3 cut(s)	104, 407, 789
MaeIII	GTNAC	2 cut(s)	331, 793
MalI	GATC	4 cut(s)	7, 41, 555, 647
MboI	GATC	4 cut(s)	5, 39, 553, 645
MboII	GAAGA	7 cut(s)	431, 641, 655, 662, 778, 872, 887
MflI	RGATCY	1 cut(s)	5
MluCI	AATT	8 cut(s)	182, 206, 300, 363, 386, 544, 875, 902
MlyI	GAGTC	4 cut(s)	136, 230, 279, 865
MmeI	TCCRAC	1 cut(s)	618
MnlI	CCTC	4 cut(s)	33, 148, 460, 932
MroXI	GAANNNNTTC	2 cut(s)	363, 717
MseI	TTAA	4 cut(s)	383, 465, 543, 804
MspI	CCGG	1 cut(s)	746
MspR9I	CCNGG	1 cut(s)	912
Mva1269I	GAATGC	1 cut(s)	61
MvaI	CCWGG	1 cut(s)	912
MvnI	CGCG	1 cut(s)	564
NdeII	GATC	4 cut(s)	5, 39, 553, 645
NlaIII	CATG	5 cut(s)	134, 242, 554, 592, 725
NmuCI	GTSAC	1 cut(s)	793
NruI	TCGCGA	1 cut(s)	564
NsbI	TGCGCA	1 cut(s)	947
NspI	RCATGY	1 cut(s)	592
PagI	TCATGA	1 cut(s)	721
PasI	CCCWGGG	1 cut(s)	911
PciI	ACATGT	1 cut(s)	588
PciSI	GCTCTTC	2 cut(s)	624, 900
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PctI	GAATGC	1 cut(s)	61
PdmI	GAANNNNTTC	2 cut(s)	363, 717
PfeI	GAWTC	3 cut(s)	44, 243, 969
PflFI	GACNNNGTC	1 cut(s)	791
PflMI	CCANNNNNTGG	1 cut(s)	537
PkrI	GCNGC	2 cut(s)	88, 150
PleI	GAGTC	4 cut(s)	135, 229, 279, 865
PpsI	GAGTC	4 cut(s)	135, 229, 279, 865
Ppu21I	YACGTR	1 cut(s)	408
PscI	ACATGT	1 cut(s)	588
Psp6I	CCWGG	1 cut(s)	910
PspFI	CCCAGC	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	910
PspPI	GGNCC	2 cut(s)	192, 251
PsuI	RGATCY	1 cut(s)	5
PsyI	GACNNNGTC	1 cut(s)	791
RruI	TCGCGA	1 cut(s)	564
RsaI	GTAC	3 cut(s)	19, 425, 981
RsaNI	GTAC	3 cut(s)	18, 424, 980
SapI	GCTCTTC	2 cut(s)	624, 900
SaqAI	TTAA	4 cut(s)	383, 465, 543, 804
SatI	GCNGC	2 cut(s)	87, 149
Sau3AI	GATC	4 cut(s)	5, 39, 553, 645
Sau96I	GGNCC	2 cut(s)	192, 251
ScaI	AGTACT	1 cut(s)	19
SchI	GAGTC	4 cut(s)	136, 230, 279, 865
ScrFI	CCNGG	1 cut(s)	912
SfaNI	GCATC	1 cut(s)	517
SinI	GGWCC	2 cut(s)	192, 251
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SpeI	ACTAGT	1 cut(s)	314
Sse9I	AATT	8 cut(s)	182, 206, 300, 363, 386, 544, 875, 902
SsiI	CCGC	3 cut(s)	12, 52, 87
SspI	AATATT	3 cut(s)	752, 801, 820
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	910
TaaI	ACNGT	2 cut(s)	158, 665
TaiI	ACGT	3 cut(s)	107, 410, 792
TaqI	TCGA	6 cut(s)	42, 214, 264, 270, 367, 924
TasI	AATT	8 cut(s)	182, 206, 300, 363, 386, 544, 875, 902
TatI	WGTACW	2 cut(s)	17, 423
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	3 cut(s)	44, 243, 969
Tru1I	TTAA	4 cut(s)	383, 465, 543, 804
Tru9I	TTAA	4 cut(s)	383, 465, 543, 804
TseFI	GTSAC	1 cut(s)	793
TseI	GCWGC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	793
TspDTI	ATGAA	4 cut(s)	235, 477, 710, 738
TspGWI	ACGGA	1 cut(s)	710
Tth111I	GACNNNGTC	1 cut(s)	791
Van91I	CCANNNNNTGG	1 cut(s)	537
VpaK11BI	GGWCC	2 cut(s)	192, 251
XapI	RAATTY	3 cut(s)	182, 206, 300
XceI	RCATGY	1 cut(s)	592
XmnI	GAANNNNTTC	2 cut(s)	363, 717
XspI	CTAG	1 cut(s)	315
ZrmI	AGTACT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.