Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009154

Physical Location & Seq

Genomic Coordinates Reverse (-)

237342 .. 241186

Gene Structure 3845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00276740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTGGCATAAATGGAAAGAGAAGTTCATGTGCAAATTCTCCAAGTACATCAAATATTTGCAGGGGATTGACCACACTATACCAATGGTGAATCCAAATCTTCCCCGTTGTCCAACTATATGTTATAGGCCCATACAACCAGCTGATCTTGAGATCTTGGAGCAAATCCATACTGATTTATTTCCCATCAGGTATGAGTCCGAGTTTTTTCAAAATGTAGTGAATGGACAAGATATTGTGTCATGGGCAGCTGTTGATCGAAGTCGTCCAAATGGTCAAAGTGATGAACTAATTGGATTTGTAACTGCACGAATTGTCCTTGCAAGAGAAAGTGAGATAGGGGATTTGCTCAATTACGACCCATCAAAACCAGATCAGACCTTAGTCTACATTCTGACACTAGGAGTTGTAGAATCTTTCAGAAATCTTGGCATAGCTTCTGCACTTATTCGTGAGGTCATAAAATATGCCTCAAGTATACCGACCTGCAGGGCAGTTTACCTGCATGTCATTTCTTACAATAATCCTGCAATCCTTTTGTACAAGAAAATGTCATTCAAGTGTGTAAGAAGATTGCAAGGCTTTTACTTGATCGATGGTCAGCATTATGATTCTTATCTGTTTGTTTACTATGTAAATGGCGGTCGATCTCCTTGCTCACCATTAGAGCTTGTTACAGCGACACTGAATCATATGAGGAATGGTTTGAAGTTGGTGTTTGGAAGACTACGGAAGAACGAAGATAGGAAGTTGGTCTCAAAATGGTCGAAATGTAAAGAGAGCCATTGCCTTATATCGACAACACAAAGCAGGAAAAACCTGACAGCAGAATGTACAGGGTATGAATGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0017196 GO:0018193 GO:0018205 GO:0018206 GO:0018393 GO:0018394 GO:0019538 GO:0022414 GO:0022607 GO:0031365 GO:0031497 GO:0034212 GO:0034622 GO:0034728 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051321 GO:0051604 GO:0061733 GO:0065003 GO:0065004 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

284

Amino Acids

32.75

Weight (kDa)

8.99

Isoelectric Point (pI)

45.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	80 - 186	8.5e-13	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	97 - 187	5.3e-06	Acetyltransferase (GNAT) domain
Acetyltransf_4	PF13420	133 - 206	3.3e-06	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02980 AT3G02980 AT5G16800 AT5G16800 AT5G16800
fragaria_vesca	FvH4_7g34080 FvH4_7g34080
malus_domestica	MD01G1237100.v1.1 MD07G1309700.v1.1
prunus_persica	Prupe.2G327400_v2.0.a1
pyrus_communis	pycom01g24490
rosa_chinensis	RchiOBHm_Chr1g0384361
rosa_laevigata	RLG00000026045
rosa_multiflora	Rmu_sc0016737.1_g000007
rosa_roxburghii	Rroxscaffold_4G00276740
rosa_rugosa	Rorug01G0447000 Rorug01G0447000 Rorug01G0447100 Rorug01G0447200 Rorug01G0447200
rosa_samantha	Rh1CG443200
rosa_wichuraiana	Rw1G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	494, 510
AccI	GTMKAC	2 cut(s)	387, 478
AciI	CCGC	1 cut(s)	642
AcsI	RAATTY	1 cut(s)	35
AfaI	GTAC	3 cut(s)	47, 542, 835
AgsI	TTSAA	3 cut(s)	212, 559, 709
AluBI	AGCT	4 cut(s)	143, 251, 437, 670
AluI	AGCT	4 cut(s)	143, 251, 437, 670
Alw26I	GTCTC	1 cut(s)	760
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	100, 651
BbsI	GAAGAC	1 cut(s)	730
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	3 cut(s)	194, 370, 590
BcgI	CGANNNNNNTGC	2 cut(s)	636, 670
BcoDI	GTCTC	1 cut(s)	760
BfaI	CTAG	1 cut(s)	401
BfmI	CTRYAG	1 cut(s)	487
BfuAI	ACCTGC	2 cut(s)	494, 510
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	129
BoxI	GACNNNNGTC	1 cut(s)	383
BpiI	GAAGAC	1 cut(s)	730
BpuEI	CTTGAG	2 cut(s)	170, 457
Bsa29I	ATCGAT	1 cut(s)	594
BsaBI	GATNNNNATC	1 cut(s)	615
BsaI	GGTCTC	1 cut(s)	760
Bse3DI	GCAATG	1 cut(s)	784
Bse8I	GATNNNNATC	1 cut(s)	615
BseCI	ATCGAT	1 cut(s)	594
BseJI	GATNNNNATC	1 cut(s)	615
BseMI	GCAATG	1 cut(s)	784
BseXI	GCAGC	1 cut(s)	260
BsgI	GTGCAG	2 cut(s)	291, 426
Bsh1285I	CGRYCG	1 cut(s)	646
BshFI	GGCC	1 cut(s)	130
BshVI	ATCGAT	1 cut(s)	594
BsiEI	CGRYCG	1 cut(s)	646
BsmAI	GTCTC	1 cut(s)	760
BsnI	GGCC	1 cut(s)	130
Bso31I	GGTCTC	1 cut(s)	760
Bsp1407I	TGTACA	2 cut(s)	540, 833
Bsp143I	GATC	6 cut(s)	145, 153, 256, 373, 591, 647
BspACI	CCGC	1 cut(s)	642
BspANI	GGCC	1 cut(s)	130
BspDI	ATCGAT	1 cut(s)	594
BspMAI	CTGCAG	1 cut(s)	491
BspMI	ACCTGC	2 cut(s)	494, 510
BspTNI	GGTCTC	1 cut(s)	760
BsrDI	GCAATG	1 cut(s)	784
BsrGI	TGTACA	2 cut(s)	540, 833
BssMI	GATC	6 cut(s)	145, 153, 256, 373, 591, 647
BssNAI	GTATAC	1 cut(s)	479
Bst1107I	GTATAC	1 cut(s)	479
BstAUI	TGTACA	2 cut(s)	540, 833
BstDEI	CTNAG	1 cut(s)	382
BstKTI	GATC	6 cut(s)	148, 156, 259, 376, 594, 650
BstMAI	GTCTC	1 cut(s)	760
BstMBI	GATC	6 cut(s)	145, 153, 256, 373, 591, 647
BstMCI	CGRYCG	1 cut(s)	646
BstNSI	RCATGY	1 cut(s)	509
BstPAI	GACNNNNGTC	1 cut(s)	383
BstSFI	CTRYAG	1 cut(s)	487
BstV1I	GCAGC	1 cut(s)	260
BstV2I	GAAGAC	1 cut(s)	730
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
BstZ17I	GTATAC	1 cut(s)	479
Bsu15I	ATCGAT	1 cut(s)	594
BsuRI	GGCC	1 cut(s)	130
BsuTUI	ATCGAT	1 cut(s)	594
BtsIMutI	CAGTG	1 cut(s)	683
BveI	ACCTGC	2 cut(s)	494, 510
Cfr13I	GGNCC	1 cut(s)	129
ClaI	ATCGAT	1 cut(s)	594
Csp6I	GTAC	3 cut(s)	46, 541, 834
CviAII	CATG	3 cut(s)	28, 243, 506
CviJI	RGCY	7 cut(s)	130, 143, 251, 437, 582, 670, 783
CviKI_1	RGCY	7 cut(s)	130, 143, 251, 437, 582, 670, 783
CviQI	GTAC	3 cut(s)	46, 541, 834
DdeI	CTNAG	1 cut(s)	382
DpnI	GATC	6 cut(s)	147, 155, 258, 375, 593, 649
DpnII	GATC	6 cut(s)	145, 153, 256, 373, 591, 647
Eco31I	GGTCTC	1 cut(s)	760
FaeI	CATG	3 cut(s)	31, 246, 509
FatI	CATG	3 cut(s)	27, 242, 505
FauNDI	CATATG	1 cut(s)	693
FblI	GTMKAC	2 cut(s)	387, 478
Fnu4HI	GCNGC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	1 cut(s)	401
GluI	GCNGC	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	130
Hin1II	CATG	3 cut(s)	31, 246, 509
HinfI	GANTC	5 cut(s)	91, 197, 413, 611, 688
HphI	GGTGA	2 cut(s)	100, 651
Hpy166II	GTNNAC	4 cut(s)	388, 479, 499, 628
Hpy188I	TCNGA	4 cut(s)	202, 378, 396, 422
Hpy188III	TCNNGA	2 cut(s)	149, 452
Hpy8I	GTNNAC	4 cut(s)	388, 479, 499, 628
HpyCH4V	TGCA	9 cut(s)	33, 61, 308, 323, 443, 489, 505, 530, 577
HpyF3I	CTNAG	1 cut(s)	382
Hsp92II	CATG	3 cut(s)	31, 246, 509
Kzo9I	GATC	6 cut(s)	145, 153, 256, 373, 591, 647
LmnI	GCTCC	1 cut(s)	160
Lsp1109I	GCAGC	1 cut(s)	260
MaeI	CTAG	1 cut(s)	401
MaeIII	GTNAC	2 cut(s)	301, 673
MalI	GATC	6 cut(s)	147, 155, 258, 375, 593, 649
MboI	GATC	6 cut(s)	145, 153, 256, 373, 591, 647
MboII	GAAGA	5 cut(s)	92, 582, 735, 745, 752
MflI	RGATCY	1 cut(s)	153
MluCI	AATT	4 cut(s)	35, 291, 312, 352
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	3 cut(s)	448, 481, 690
MslI	CAYNNNNRTG	1 cut(s)	559
MspA1I	CMGCKG	2 cut(s)	143, 251
NdeI	CATATG	1 cut(s)	693
NdeII	GATC	6 cut(s)	145, 153, 256, 373, 591, 647
NlaIII	CATG	3 cut(s)	31, 246, 509
NspI	RCATGY	1 cut(s)	509
PfeI	GAWTC	4 cut(s)	91, 413, 611, 688
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PshAI	GACNNNNGTC	1 cut(s)	383
PspPI	GGNCC	1 cut(s)	129
PstI	CTGCAG	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	153
PvuII	CAGCTG	2 cut(s)	143, 251
RsaI	GTAC	3 cut(s)	47, 542, 835
RsaNI	GTAC	3 cut(s)	46, 541, 834
RseI	CAYNNNNRTG	1 cut(s)	559
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	6 cut(s)	145, 153, 256, 373, 591, 647
Sau96I	GGNCC	1 cut(s)	129
SbfI	CCTGCAGG	1 cut(s)	491
SchI	GAGTC	1 cut(s)	206
SdaI	CCTGCAGG	1 cut(s)	491
SfcI	CTRYAG	1 cut(s)	487
SmiMI	CAYNNNNRTG	1 cut(s)	559
SmlI	CTYRAG	2 cut(s)	149, 472
SmoI	CTYRAG	2 cut(s)	149, 472
Sse8387I	CCTGCAGG	1 cut(s)	491
Sse9I	AATT	4 cut(s)	35, 291, 312, 352
SsiI	CCGC	1 cut(s)	642
SspI	AATATT	1 cut(s)	56
SspMI	CTAG	1 cut(s)	401
TaqI	TCGA	5 cut(s)	259, 594, 646, 767, 797
TasI	AATT	4 cut(s)	35, 291, 312, 352
TatI	WGTACW	3 cut(s)	45, 540, 833
TfiI	GAWTC	4 cut(s)	91, 413, 611, 688
TscAI	CASTG	1 cut(s)	690
TseI	GCWGC	1 cut(s)	248
TspDTI	ATGAA	2 cut(s)	16, 300
TspGWI	ACGGA	1 cut(s)	745
TspRI	CASTG	1 cut(s)	690
XapI	RAATTY	1 cut(s)	35
XceI	RCATGY	1 cut(s)	509
XmiI	GTMKAC	2 cut(s)	387, 478
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.