Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006590

Physical Location & Seq

Genomic Coordinates Forward (+)

5548914 .. 5551509

Gene Structure 2596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16880.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGGTGACAATCTTATGGACAAAGTTACCGCATTTGGTGAGCGCCTGAAGATCGGAGGTTCGGAAGTGAGCAACAAGATCAGTGCTGGTGTGAGCTCAATGAGCTTTAAAGTGAAGGAACTTTTTCAAGGTCCAAACCCAACTGATAAAATAGTCGAAGATGCTACTACTGAGAATCTAGAGGAACCTGACTGGGATATGAATTTGGAAATTTGTGATATGATAAATCAAGAGACAATTAATAGCGTTGAGTTGATCCGTGGTATAAAGAAGAGGATTATGATGAAGCAGCCGAGGATTCAGTACCTTGCCTTGGTTTTGCTCGAGACGTGTGTTAAGAACTGTGAGAAGGCGTTTTCAGAGGTGGCAGCAGAGAGAGTCCTTGATGAAATGGTAAAGCTGATTGATGATCCACAAACAGTTGTTAATAACCGAAACAAAGCTTTGATGCTGATTGAAGCTTGGGGAGAATCAACCAGTGAACTTCGCTACCTACCAGTTTTCGAAGAAACTTATAAGAGCTTAAAAGCAAGAGGTATTCGCTTCCCTGGACGAGACAACGAAAGCTTGGCACCTATTTTCACTCCTGCTCGGTCAACTCCAGCACCAGAACTGAATGCTGATCTTCCTCAGCATGTGCATGAACCTGCACATATCCAGTATGATGTGCCTGTAAGAAGCTTTACTGCTGAGCAGACAAAGGAAGCTTTTGATATAGCAAGAAACAGCATTGAACTTCTTTCCACGGTTCTGTCCTCCTCGCCTCAACATGATGCTTTACAGGATGACTTAACAACGACACTTGTACAACAATGTCGTCAATCTCAAACCACTGTCCAAAGAATCATTGAAACAGCAGGTGAAAACGAAGCCCTTCTTTTCGAAGCCTTGAATGTGAACGACGAGCTAGTGAAAACGCTGTCTAAGTATGAGGAGATGAACAAACCCTCTGCACCGCTAACCTCACATGAACCAGCCATGATTCCCGTTGCTGAAGAGCCCGATGACTCTCCAATTCATGGAAGAGAAGAATCTCTGGTTAGAAAATCTTCTGGTGTTCGAGGTGGATTCCATGGAGGGGGTGGTAGTGGAGATGACATGATGGATGATCTTGATGAGATGATATTCGGTAAGAAAAACGGCTGTGATTCTTCGACTAATCCAGATCATGACCCAAAAAAGGAGCAGTCCTCATCCAAAAACGACGATCTCATTCGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007088 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030276 GO:0033043 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0045839 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

407

Amino Acids

45.31

Weight (kDa)

4.75

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VHS	PF00790	47 - 179	1.6e-26	VHS domain
GAT	PF03127	241 - 292	3.1e-10	GAT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16880 AT5G16880 AT5G16880 AT5G16880
fragaria_vesca	FvH4_7g34030 FvH4_7g34030 FvH4_7g34030 FvH4_7g34030 FvH4_7g34030 FvH4_7g34030
malus_domestica	MD01G1236800.v1.1 MD07G1309400.v1.1
prunus_persica	Prupe.2G326800_v2.0.a1
pyrus_communis	pycom01g24450 pycom07g28140
rosa_chinensis	RchiOBHm_Chr1g0384291
rosa_laevigata	RLG00000026051
rosa_multiflora	Rmu_co8343069.1_g000001 Rmu_sc0016737.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276790
rosa_rugosa	Rorug01G0446500
rosa_samantha	Rh1AG472100 Rh1BG429700 Rh1CG442300 Rh1DG462400
rosa_wichuraiana	Rw1G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	516
AarI	CACCTGC	1 cut(s)	848
Acc36I	ACCTGC	2 cut(s)	655, 848
AccB1I	GGYRCC	1 cut(s)	571
AccB7I	CCANNNNNTGG	1 cut(s)	1019
AciI	CCGC	2 cut(s)	30, 956
AclWI	GGATC	2 cut(s)	250, 404
AcsI	RAATTY	2 cut(s)	202, 210
AcuI	CTGAAG	2 cut(s)	68, 1014
AfaI	GTAC	2 cut(s)	305, 807
AfiI	CCNNNNNNNGG	4 cut(s)	313, 1019, 1078, 1180
AflIII	ACRYGT	1 cut(s)	329
AgsI	TTSAA	5 cut(s)	128, 458, 734, 851, 892
AjiI	CACGTC	1 cut(s)	330
AjnI	CCWGG	1 cut(s)	547
Alw21I	GWGCWC	1 cut(s)	98
Alw26I	GTCTC	3 cut(s)	227, 320, 549
AlwI	GGATC	2 cut(s)	250, 404
Ama87I	CYCGRG	1 cut(s)	323
ApeKI	GCWGC	2 cut(s)	289, 368
ApoI	RAATTY	2 cut(s)	202, 210
AseI	ATTAAT	1 cut(s)	240
Asp700I	GAANNNNTTC	3 cut(s)	123, 873, 1048
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	3 cut(s)	17, 50, 872
AsuII	TTCGAA	2 cut(s)	504, 882
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	571
BanII	GRGCYC	2 cut(s)	98, 1002
Bbv12I	GWGCWC	1 cut(s)	98
BbvCI	CCTCAGC	1 cut(s)	630
BbvI	GCAGC	2 cut(s)	301, 380
BccI	CCATC	1 cut(s)	1096
BceAI	ACGGC	1 cut(s)	1156
BciT130I	CCWGG	1 cut(s)	549
BcoDI	GTCTC	3 cut(s)	227, 320, 549
BfaI	CTAG	2 cut(s)	179, 908
BfoI	RGCGCY	1 cut(s)	46
BfuAI	ACCTGC	2 cut(s)	655, 848
BisI	GCNGC	2 cut(s)	290, 369
BlpI	GCTNAGC	1 cut(s)	690
BlsI	GCNGC	2 cut(s)	291, 370
Bme1390I	CCNGG	1 cut(s)	549
Bme18I	GGWCC	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	323
BmgBI	CACGTC	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	186, 573
BmrFI	CCNGG	1 cut(s)	549
BmrI	ACTGGG	1 cut(s)	202
BmsI	GCATC	3 cut(s)	151, 438, 763
BmuI	ACTGGG	1 cut(s)	202
BplI	GAGNNNNNCTC	2 cut(s)	1175, 1207
BpmI	CTGGAG	1 cut(s)	585
Bpu10I	CCTNAGC	1 cut(s)	630
Bpu1102I	GCTNAGC	1 cut(s)	690
Bpu14I	TTCGAA	2 cut(s)	504, 882
BsaJI	CCNNGG	6 cut(s)	259, 293, 312, 547, 744, 1072
Bsc4I	CCNNNNNNNGG	4 cut(s)	313, 1019, 1078, 1180
Bse1I	ACTGG	4 cut(s)	197, 477, 497, 658
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	6 cut(s)	259, 293, 312, 547, 744, 1072
BseGI	GGATG	3 cut(s)	790, 1111, 1193
BseLI	CCNNNNNNNGG	4 cut(s)	313, 1019, 1078, 1180
BseMII	CTCAG	3 cut(s)	162, 644, 681
BseNI	ACTGG	4 cut(s)	197, 477, 497, 658
BseRI	GAGGAG	2 cut(s)	748, 947
BseXI	GCAGC	2 cut(s)	301, 380
BsgI	GTGCAG	2 cut(s)	633, 936
BshNI	GGYRCC	1 cut(s)	571
BsiHKAI	GWGCWC	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	323
BslI	CCNNNNNNNGG	4 cut(s)	313, 1019, 1078, 1180
BsmAI	GTCTC	3 cut(s)	227, 320, 549
BsmBI	CGTCTC	1 cut(s)	320
BsmI	GAATGC	1 cut(s)	622
BsoBI	CYCGRG	1 cut(s)	323
Bsp119I	TTCGAA	2 cut(s)	504, 882
Bsp1286I	GDGCHC	2 cut(s)	98, 1002
Bsp1407I	TGTACA	1 cut(s)	805
Bsp143I	GATC	8 cut(s)	51, 78, 255, 409, 622, 1108, 1165, 1207
Bsp1720I	GCTNAGC	1 cut(s)	690
Bsp19I	CCATGG	1 cut(s)	1072
BspACI	CCGC	2 cut(s)	30, 956
BspCNI	CTCAG	3 cut(s)	163, 643, 682
BspHI	TCATGA	1 cut(s)	1168
BspLI	GGNNCC	2 cut(s)	186, 573
BspMI	ACCTGC	2 cut(s)	655, 848
BspPI	GGATC	2 cut(s)	250, 404
BspQI	GCTCTTC	1 cut(s)	990
BspT104I	TTCGAA	2 cut(s)	504, 882
BspT107I	GGYRCC	1 cut(s)	571
BsrGI	TGTACA	1 cut(s)	805
BsrI	ACTGG	4 cut(s)	197, 477, 497, 658
BssECI	CCNNGG	6 cut(s)	259, 293, 312, 547, 744, 1072
BssMI	GATC	8 cut(s)	51, 78, 255, 409, 622, 1108, 1165, 1207
BssT1I	CCWWGG	2 cut(s)	312, 1072
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	4 cut(s)	344, 421, 748, 835
Bst6I	CTCTTC	3 cut(s)	266, 990, 1018
BstAUI	TGTACA	1 cut(s)	805
BstBI	TTCGAA	2 cut(s)	504, 882
BstDEI	CTNAG	4 cut(s)	171, 630, 690, 924
BstDSI	CCRYGG	3 cut(s)	259, 744, 1072
BstF5I	GGATG	3 cut(s)	790, 1111, 1193
BstH2I	RGCGCY	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	8 cut(s)	54, 81, 258, 412, 625, 1111, 1168, 1210
BstMAI	GTCTC	3 cut(s)	227, 320, 549
BstMBI	GATC	8 cut(s)	51, 78, 255, 409, 622, 1108, 1165, 1207
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstNI	CCWGG	1 cut(s)	549
BstNSI	RCATGY	1 cut(s)	638
BstSCI	CCNGG	1 cut(s)	547
BstV1I	GCAGC	2 cut(s)	301, 380
BtgI	CCRYGG	3 cut(s)	259, 744, 1072
BtrI	CACGTC	1 cut(s)	330
BtsCI	GGATG	3 cut(s)	790, 1111, 1193
BtsIMutI	CAGTG	3 cut(s)	88, 484, 831
BveI	ACCTGC	2 cut(s)	655, 848
CciI	TCATGA	1 cut(s)	1168
CfoI	GCGC	1 cut(s)	45
Cfr13I	GGNCC	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	304, 806
CviAII	CATG	9 cut(s)	635, 641, 770, 968, 979, 1019, 1073, 1099, 1169
CviQI	GTAC	2 cut(s)	304, 806
DdeI	CTNAG	4 cut(s)	171, 630, 690, 924
DpnI	GATC	8 cut(s)	53, 80, 257, 411, 624, 1110, 1167, 1209
DpnII	GATC	8 cut(s)	51, 78, 255, 409, 622, 1108, 1165, 1207
DraI	TTTAAA	1 cut(s)	109
Eam1104I	CTCTTC	3 cut(s)	266, 990, 1018
EarI	CTCTTC	3 cut(s)	266, 990, 1018
Ecl136II	GAGCTC	1 cut(s)	96
Eco130I	CCWWGG	2 cut(s)	312, 1072
Eco24I	GRGCYC	2 cut(s)	98, 1002
Eco47I	GGWCC	1 cut(s)	131
Eco53kI	GAGCTC	1 cut(s)	96
Eco57I	CTGAAG	2 cut(s)	68, 1014
Eco88I	CYCGRG	1 cut(s)	323
EcoICRI	GAGCTC	1 cut(s)	96
EcoRII	CCWGG	1 cut(s)	547
EcoT14I	CCWWGG	2 cut(s)	312, 1072
EcoT38I	GRGCYC	2 cut(s)	98, 1002
ErhI	CCWWGG	2 cut(s)	312, 1072
Esp3I	CGTCTC	1 cut(s)	320
FaeI	CATG	9 cut(s)	638, 644, 773, 971, 982, 1022, 1076, 1102, 1172
FalI	AAGNNNNNCTT	2 cut(s)	861, 893
FatI	CATG	9 cut(s)	634, 640, 769, 967, 978, 1018, 1072, 1098, 1168
Fnu4HI	GCNGC	2 cut(s)	290, 369
FokI	GGATG	3 cut(s)	797, 1118, 1180
FriOI	GRGCYC	2 cut(s)	98, 1002
Fsp4HI	GCNGC	2 cut(s)	290, 369
FspBI	CTAG	2 cut(s)	179, 908
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	2 cut(s)	290, 369
GsuI	CTGGAG	1 cut(s)	585
HaeII	RGCGCY	1 cut(s)	46
HhaI	GCGC	1 cut(s)	45
Hin1II	CATG	9 cut(s)	638, 644, 773, 971, 982, 1022, 1076, 1102, 1172
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HincII	GTYRAC	1 cut(s)	597
HindII	GTYRAC	1 cut(s)	597
HindIII	AAGCTT	5 cut(s)	441, 459, 565, 679, 705
HphI	GGTGA	3 cut(s)	17, 50, 872
Hpy166II	GTNNAC	3 cut(s)	482, 597, 898
Hpy188I	TCNGA	4 cut(s)	56, 64, 361, 1223
Hpy188III	TCNNGA	6 cut(s)	179, 230, 325, 1112, 1163, 1169
Hpy8I	GTNNAC	3 cut(s)	482, 597, 898
Hpy99I	CGWCG	2 cut(s)	905, 1208
HpyAV	CCTTC	3 cut(s)	109, 343, 884
HpyCH4III	ACNGT	4 cut(s)	344, 421, 748, 835
HpyCH4IV	ACGT	1 cut(s)	329
HpyCH4V	TGCA	3 cut(s)	640, 650, 953
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
HpyF3I	CTNAG	4 cut(s)	171, 630, 690, 924
HpySE526I	ACGT	1 cut(s)	329
Hsp92II	CATG	9 cut(s)	638, 644, 773, 971, 982, 1022, 1076, 1102, 1172
HspAI	GCGC	1 cut(s)	43
Kzo9I	GATC	8 cut(s)	51, 78, 255, 409, 622, 1108, 1165, 1207
LguI	GCTCTTC	1 cut(s)	990
LmnI	GCTCC	1 cut(s)	1183
Lsp1109I	GCAGC	2 cut(s)	301, 380
LweI	GCATC	3 cut(s)	151, 438, 763
MaeI	CTAG	2 cut(s)	179, 908
MaeII	ACGT	1 cut(s)	329
MaeIII	GTNAC	2 cut(s)	5, 25
MalI	GATC	8 cut(s)	53, 80, 257, 411, 624, 1110, 1167, 1209
MboI	GATC	8 cut(s)	51, 78, 255, 409, 622, 1108, 1165, 1207
MhlI	GDGCHC	2 cut(s)	98, 1002
MluCI	AATT	4 cut(s)	202, 210, 237, 1014
MlyI	GAGTC	2 cut(s)	387, 1001
MroXI	GAANNNNTTC	3 cut(s)	123, 873, 1048
MseI	TTAA	6 cut(s)	108, 240, 336, 426, 524, 791
MslI	CAYNNNNRTG	1 cut(s)	639
MspR9I	CCNGG	1 cut(s)	549
Mva1269I	GAATGC	1 cut(s)	622
MvaI	CCWGG	1 cut(s)	549
MwoI	GCNNNNNNNGC	1 cut(s)	102
NcoI	CCATGG	1 cut(s)	1072
NdeII	GATC	8 cut(s)	51, 78, 255, 409, 622, 1108, 1165, 1207
NlaIII	CATG	9 cut(s)	638, 644, 773, 971, 982, 1022, 1076, 1102, 1172
NlaIV	GGNNCC	2 cut(s)	186, 573
NmeAIII	GCCGAG	1 cut(s)	318
NmuCI	GTSAC	1 cut(s)	5
NspI	RCATGY	1 cut(s)	638
NspV	TTCGAA	2 cut(s)	504, 882
PaeR7I	CTCGAG	1 cut(s)	323
PagI	TCATGA	1 cut(s)	1168
PaqCI	CACCTGC	1 cut(s)	848
PciSI	GCTCTTC	1 cut(s)	990
PctI	GAATGC	1 cut(s)	622
PdmI	GAANNNNTTC	3 cut(s)	123, 873, 1048
PfeI	GAWTC	9 cut(s)	175, 298, 470, 843, 982, 1031, 1068, 1148, 1218
PflMI	CCANNNNNTGG	1 cut(s)	1019
PkrI	GCNGC	2 cut(s)	291, 370
PleI	GAGTC	2 cut(s)	386, 1001
PpsI	GAGTC	2 cut(s)	386, 1001
PshBI	ATTAAT	1 cut(s)	240
PsiI	TTATAA	1 cut(s)	516
Psp124BI	GAGCTC	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	547
PspN4I	GGNNCC	2 cut(s)	186, 573
PspPI	GGNCC	1 cut(s)	131
RsaI	GTAC	2 cut(s)	305, 807
RsaNI	GTAC	2 cut(s)	304, 806
RseI	CAYNNNNRTG	1 cut(s)	639
SacI	GAGCTC	1 cut(s)	98
SapI	GCTCTTC	1 cut(s)	990
SaqAI	TTAA	6 cut(s)	108, 240, 336, 426, 524, 791
SatI	GCNGC	2 cut(s)	290, 369
Sau3AI	GATC	8 cut(s)	51, 78, 255, 409, 622, 1108, 1165, 1207
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	2 cut(s)	387, 1001
ScrFI	CCNGG	1 cut(s)	549
SduI	GDGCHC	2 cut(s)	98, 1002
SfaNI	GCATC	3 cut(s)	151, 438, 763
Sfr274I	CTCGAG	1 cut(s)	323
SfuI	TTCGAA	2 cut(s)	504, 882
SinI	GGWCC	1 cut(s)	131
SlaI	CTCGAG	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	639
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	4 cut(s)	202, 210, 237, 1014
SsiI	CCGC	2 cut(s)	30, 956
SspMI	CTAG	2 cut(s)	179, 908
SstI	GAGCTC	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	547
StyI	CCWWGG	2 cut(s)	312, 1072
TaaI	ACNGT	4 cut(s)	344, 421, 748, 835
TaiI	ACGT	1 cut(s)	332
TaqI	TCGA	7 cut(s)	156, 324, 504, 882, 1060, 1154, 1216
TaqII	GACCGA	1 cut(s)	582
TasI	AATT	4 cut(s)	202, 210, 237, 1014
TatI	WGTACW	1 cut(s)	805
TfiI	GAWTC	9 cut(s)	175, 298, 470, 843, 982, 1031, 1068, 1148, 1218
Tru1I	TTAA	6 cut(s)	108, 240, 336, 426, 524, 791
Tru9I	TTAA	6 cut(s)	108, 240, 336, 426, 524, 791
TscAI	CASTG	3 cut(s)	88, 484, 838
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	2 cut(s)	289, 368
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	7 cut(s)	215, 299, 402, 657, 953, 984, 1007
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	3 cut(s)	88, 484, 838
Van91I	CCANNNNNTGG	1 cut(s)	1019
VpaK11BI	GGWCC	1 cut(s)	131
VspI	ATTAAT	1 cut(s)	240
XapI	RAATTY	2 cut(s)	202, 210
XbaI	TCTAGA	1 cut(s)	178
XceI	RCATGY	1 cut(s)	638
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1079
XhoI	CTCGAG	1 cut(s)	323
XmnI	GAANNNNTTC	3 cut(s)	123, 873, 1048
XspI	CTAG	2 cut(s)	179, 908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.