Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0006590

Physical Location & Seq

Genomic Coordinates Reverse (-)

69528623 .. 69531846

Gene Structure 3224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG442300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGAGTGACAATTTGATGGAGAAAGTGAGTGCTTTTGGTGAACGCCTCAAGATTGAAGGGAGTGAAGTAGGCCGAAAGATGAGTGCCGGCTTGAGCTCAGTGAGCTTCAAGGTGAAGGAGCTTTTCCAAGGTCCAAACCAAGGAGATAAGATCGTTGAAGAGGCCACGTCAGAGGCACTTGATGAACCTGACTGGGCATTGAATCTTGAGATTTGTGACATGATCAATACCGAAAGAGTTAACAGTGTTGAATTGATCCGTGGAATAAAAAAGCGCATTATGTTGAAGAATCCTAGGGTTCAGTACCTTTCTTTGGTACTGCTTGAAACAGTTGTTAAAAATTGTGAGAAGGCTTTCTCAGAGATAGCAGCTGAGAGAGTTCTTGATGAGATGGTGAAGCTGATTGATGACCCTCAGACTGTTGTTAATAATCGCAACAAGGCGTTGGTGCTGATCGAAGCATGGGGAGAATCAACCGGGGAGCTCCGCTATCTGCCTGTTTACGAGGAAACATACAAGAGTTTAAGATCAAGGGGTATTCGGTTCCCTGGTCGTGACAACGAGAGTTTGGCACCTATTTTCACTCCCCCTCGTTCAGTTTCAGCTTCGGAGTTAGATGCTGGTCTTTCCCAGCAGATTCCAGCTGATATTCCTGTGCAAAGCTTTACCCCTGAACAATCAAAGGAAGCATTTGATGTTGCAAGAAACAGTATTGAGCTTCTTAGTACTGTTTTTTCTTCTTCACCCCAACAAGATGCTTTACAGGATGACTTGACAACCACACTTGTGTACCAATGCCGTCAGTCTCAGGCCACTGTGCAGAGAATTATAGAGTCAGCTGGAGAGAACGAGGCCCTGCTGTTTGAAGCGTTAAACGTGAATGATGAGATCTGTAAAGCTCTATCCAAGTATGAAGAACTGACGAAGCCTTCAGTTGCTCACCAGCAGCCAGAACCTGCAATGATACCTGTTGCTGTTGAGCCTGATGAATCACCAATTCACACGAAAGAGGATTCCTTGATCAGAAAACCAGCTGGTTCTCGAGGTGTCCCTCATGCAGGGATCAATGATGACATGATGGATGATCTCGATGAGATGATATTTGGCAAGAAAGGTGGGAGCTCATCGGAAGGAGGCCAAGATCCAAAGAAGCAGCAGCCGCCGTCAAAGGATGACCTGATCAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007088 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030276 GO:0033043 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0045839 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

396

Amino Acids

43.83

Weight (kDa)

4.7

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VHS	PF00790	49 - 179	1.9e-25	VHS domain
GAT	PF03127	235 - 309	5.2e-16	GAT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16880 AT5G16880 AT5G16880 AT5G16880
fragaria_vesca	FvH4_7g34030 FvH4_7g34030 FvH4_7g34030 FvH4_7g34030 FvH4_7g34030 FvH4_7g34030
malus_domestica	MD01G1236800.v1.1 MD07G1309400.v1.1
prunus_persica	Prupe.2G326800_v2.0.a1
pyrus_communis	pycom01g24450 pycom07g28140
rosa_chinensis	RchiOBHm_Chr1g0384291
rosa_laevigata	RLG00000026051
rosa_multiflora	Rmu_co8343069.1_g000001 Rmu_sc0016737.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276790
rosa_rugosa	Rorug01G0446500
rosa_samantha	Rh1AG472100 Rh1BG429700 Rh1CG442300 Rh1DG462400
rosa_wichuraiana	Rw1G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	964
AccB1I	GGYRCC	1 cut(s)	571
AciI	CCGC	2 cut(s)	487, 1160
AclWI	GGATC	3 cut(s)	250, 1070, 1136
AcuI	CTGAAG	1 cut(s)	915
AfaI	GTAC	4 cut(s)	305, 318, 727, 791
AfiI	CCNNNNNNNGG	3 cut(s)	140, 313, 1058
AgsI	TTSAA	8 cut(s)	56, 109, 158, 202, 251, 286, 326, 866
AjiI	CACGTC	1 cut(s)	168
AjnI	CCWGG	1 cut(s)	547
AleI	CACNNNNGTG	1 cut(s)	785
Alw21I	GWGCWC	3 cut(s)	98, 486, 1124
Alw26I	GTCTC	1 cut(s)	810
AlwI	GGATC	3 cut(s)	250, 1070, 1136
AlwNI	CAGNNNCTG	1 cut(s)	956
Ama87I	CYCGRG	1 cut(s)	1041
AoxI	GGCC	5 cut(s)	70, 162, 810, 852, 1135
ApeKI	GCWGC	4 cut(s)	368, 946, 1153, 1156
Asp700I	GAANNNNTTC	1 cut(s)	353
AspA2I	CCTAGG	1 cut(s)	293
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	2 cut(s)	131, 853
AsuC2I	CCSGG	1 cut(s)	478
AsuHPI	GGTGA	6 cut(s)	50, 124, 406, 735, 932, 984
AvaI	CYCGRG	1 cut(s)	1041
AvaII	GGWCC	1 cut(s)	131
AvrII	CCTAGG	1 cut(s)	293
BaeI	ACNNNNGTAYC	2 cut(s)	773, 806
BanI	GGYRCC	1 cut(s)	571
BanII	GRGCYC	3 cut(s)	98, 486, 1124
Bbv12I	GWGCWC	3 cut(s)	98, 486, 1124
BbvI	GCAGC	4 cut(s)	380, 958, 1165, 1168
BccI	CCATC	3 cut(s)	10, 385, 1072
BceAI	ACGGC	2 cut(s)	783, 1147
BciT130I	CCWGG	1 cut(s)	549
BclI	TGATCA	3 cut(s)	222, 1020, 1179
BcnI	CCSGG	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	810
BfaI	CTAG	1 cut(s)	294
BfuAI	ACCTGC	1 cut(s)	964
BglII	AGATCT	1 cut(s)	888
BisI	GCNGC	5 cut(s)	369, 947, 1154, 1157, 1160
BlnI	CCTAGG	1 cut(s)	293
BlsI	GCNGC	5 cut(s)	370, 948, 1155, 1158, 1161
BmcAI	AGTACT	1 cut(s)	727
Bme1390I	CCNGG	2 cut(s)	478, 549
Bme18I	GGWCC	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	1041
BmgBI	CACGTC	1 cut(s)	168
BmgT120I	GGNCC	2 cut(s)	131, 853
BmiI	GGNNCC	2 cut(s)	545, 573
BmrFI	CCNGG	2 cut(s)	478, 549
BmrI	ACTGGG	1 cut(s)	202
BmsI	GCATC	2 cut(s)	607, 745
BmuI	ACTGGG	1 cut(s)	202
BpmI	CTGGAG	1 cut(s)	861
BpuEI	CTTGAG	3 cut(s)	32, 112, 227
BpuMI	CCSGG	1 cut(s)	478
BsaJI	CCNNGG	6 cut(s)	127, 139, 259, 293, 477, 547
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 313, 1058
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	197
Bse3DI	GCAATG	1 cut(s)	966
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	6 cut(s)	127, 139, 259, 293, 477, 547
BseGI	GGATG	3 cut(s)	772, 1087, 1177
BseLI	CCNNNNNNNGG	3 cut(s)	140, 313, 1058
BseMI	GCAATG	1 cut(s)	966
BseMII	CTCAG	5 cut(s)	111, 363, 372, 428, 821
BseNI	ACTGG	1 cut(s)	197
BseXI	GCAGC	4 cut(s)	380, 958, 1165, 1168
BseYI	CCCAGC	1 cut(s)	630
BsgI	GTGCAG	1 cut(s)	839
BshFI	GGCC	5 cut(s)	72, 164, 812, 854, 1137
BshNI	GGYRCC	1 cut(s)	571
BsiHKAI	GWGCWC	3 cut(s)	98, 486, 1124
BsiHKCI	CYCGRG	1 cut(s)	1041
BsiSI	CCGG	2 cut(s)	87, 477
BslFI	GGGAC	1 cut(s)	1034
BslI	CCNNNNNNNGG	3 cut(s)	140, 313, 1058
BsmAI	GTCTC	1 cut(s)	810
BsmFI	GGGAC	1 cut(s)	1034
BsnI	GGCC	5 cut(s)	72, 164, 812, 854, 1137
BsoBI	CYCGRG	1 cut(s)	1041
Bsp1286I	GDGCHC	3 cut(s)	98, 486, 1124
BspACI	CCGC	2 cut(s)	487, 1160
BspANI	GGCC	5 cut(s)	72, 164, 812, 854, 1137
BspCNI	CTCAG	5 cut(s)	110, 364, 371, 427, 820
BspLI	GGNNCC	2 cut(s)	545, 573
BspMI	ACCTGC	1 cut(s)	964
BspPI	GGATC	3 cut(s)	250, 1070, 1136
BspT107I	GGYRCC	1 cut(s)	571
BsrDI	GCAATG	1 cut(s)	966
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	197
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	6 cut(s)	127, 139, 259, 293, 477, 547
BssT1I	CCWWGG	3 cut(s)	127, 139, 293
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	6 cut(s)	245, 331, 421, 710, 730, 817
Bst6I	CTCTTC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	6 cut(s)	97, 358, 372, 414, 722, 807
BstDSI	CCRYGG	1 cut(s)	259
BstENI	CCTNNNNNAGG	1 cut(s)	1056
BstF5I	GGATG	3 cut(s)	772, 1087, 1177
BstHHI	GCGC	1 cut(s)	276
BstMAI	GTCTC	1 cut(s)	810
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 1159
BstNI	CCWGG	1 cut(s)	549
BstSCI	CCNGG	2 cut(s)	476, 547
BstV1I	GCAGC	4 cut(s)	380, 958, 1165, 1168
BstX2I	RGATCY	2 cut(s)	888, 1141
BstYI	RGATCY	2 cut(s)	888, 1141
BsuRI	GGCC	5 cut(s)	72, 164, 812, 854, 1137
BtgI	CCRYGG	1 cut(s)	259
BtrI	CACGTC	1 cut(s)	168
BtsCI	GGATG	3 cut(s)	772, 1087, 1177
BtsIMutI	CAGTG	3 cut(s)	105, 250, 813
BveI	ACCTGC	1 cut(s)	964
Cac8I	GCNNGC	1 cut(s)	88
CaiI	CAGNNNCTG	1 cut(s)	956
CfoI	GCGC	1 cut(s)	276
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	2 cut(s)	131, 853
Csp6I	GTAC	4 cut(s)	304, 317, 726, 790
CspCI	CAANNNNNGTGG	2 cut(s)	1096, 1131
CviAII	CATG	4 cut(s)	220, 462, 1055, 1075
CviQI	GTAC	4 cut(s)	304, 317, 726, 790
DdeI	CTNAG	6 cut(s)	97, 358, 372, 414, 722, 807
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Ecl136II	GAGCTC	3 cut(s)	96, 484, 1122
Eco130I	CCWWGG	3 cut(s)	127, 139, 293
Eco24I	GRGCYC	3 cut(s)	98, 486, 1124
Eco47I	GGWCC	1 cut(s)	131
Eco53kI	GAGCTC	3 cut(s)	96, 484, 1122
Eco57I	CTGAAG	1 cut(s)	915
Eco88I	CYCGRG	1 cut(s)	1041
EcoICRI	GAGCTC	3 cut(s)	96, 484, 1122
EcoNI	CCTNNNNNAGG	1 cut(s)	1056
EcoO109I	RGGNCCY	1 cut(s)	853
EcoRII	CCWGG	1 cut(s)	547
EcoT14I	CCWWGG	3 cut(s)	127, 139, 293
EcoT38I	GRGCYC	3 cut(s)	98, 486, 1124
ErhI	CCWWGG	3 cut(s)	127, 139, 293
FaeI	CATG	4 cut(s)	223, 465, 1058, 1078
FaiI	YATR	8 cut(s)	221, 281, 463, 514, 830, 912, 1056, 1076
FaqI	GGGAC	1 cut(s)	1034
FatI	CATG	4 cut(s)	219, 461, 1054, 1074
FbaI	TGATCA	3 cut(s)	222, 1020, 1179
Fnu4HI	GCNGC	5 cut(s)	369, 947, 1154, 1157, 1160
FokI	GGATG	3 cut(s)	779, 1094, 1184
FriOI	GRGCYC	3 cut(s)	98, 486, 1124
Fsp4HI	GCNGC	5 cut(s)	369, 947, 1154, 1157, 1160
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	5 cut(s)	369, 947, 1154, 1157, 1160
GsaI	CCCAGC	1 cut(s)	634
GsuI	CTGGAG	1 cut(s)	861
HaeIII	GGCC	5 cut(s)	72, 164, 812, 854, 1137
HapII	CCGG	2 cut(s)	87, 477
HhaI	GCGC	1 cut(s)	276
Hin1II	CATG	4 cut(s)	223, 465, 1058, 1078
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	661
HinfI	GANTC	7 cut(s)	202, 289, 470, 637, 833, 989, 1013
HpaI	GTTAAC	1 cut(s)	241
HpaII	CCGG	2 cut(s)	87, 477
HphI	GGTGA	6 cut(s)	50, 124, 406, 735, 932, 984
Hpy166II	GTNNAC	4 cut(s)	41, 241, 502, 790
Hpy188I	TCNGA	6 cut(s)	172, 361, 417, 610, 1025, 1129
Hpy188III	TCNNGA	6 cut(s)	49, 206, 383, 554, 1041, 1088
Hpy8I	GTNNAC	4 cut(s)	41, 241, 502, 790
HpyAV	CCTTC	5 cut(s)	50, 109, 343, 939, 1124
HpyCH4III	ACNGT	6 cut(s)	245, 331, 421, 710, 730, 817
HpyCH4IV	ACGT	2 cut(s)	167, 876
HpyCH4V	TGCA	5 cut(s)	658, 701, 820, 959, 1058
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 1159
HpyF3I	CTNAG	6 cut(s)	97, 358, 372, 414, 722, 807
HpySE526I	ACGT	2 cut(s)	167, 876
Hsp92II	CATG	4 cut(s)	223, 465, 1058, 1078
HspAI	GCGC	1 cut(s)	274
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
Ksp22I	TGATCA	3 cut(s)	222, 1020, 1179
KspAI	GTTAAC	1 cut(s)	241
LmnI	GCTCC	4 cut(s)	118, 481, 489, 1119
Lsp1109I	GCAGC	4 cut(s)	380, 958, 1165, 1168
LweI	GCATC	2 cut(s)	607, 745
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	2 cut(s)	167, 876
MaeIII	GTNAC	3 cut(s)	5, 215, 554
MboII	GAAGA	5 cut(s)	170, 298, 729, 732, 926
MflI	RGATCY	2 cut(s)	888, 1141
MhlI	GDGCHC	3 cut(s)	98, 486, 1124
MluCI	AATT	5 cut(s)	10, 251, 340, 825, 996
MlyI	GAGTC	1 cut(s)	842
MroNI	GCCGGC	1 cut(s)	86
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	5 cut(s)	240, 336, 426, 524, 872
MslI	CAYNNNNRTG	1 cut(s)	785
MspA1I	CMGCKG	4 cut(s)	371, 644, 839, 1034
MspI	CCGG	2 cut(s)	87, 477
MspR9I	CCNGG	2 cut(s)	478, 549
MvaI	CCWGG	1 cut(s)	549
MwoI	GCNNNNNNNGC	2 cut(s)	102, 1159
NaeI	GCCGGC	1 cut(s)	88
NciI	CCSGG	1 cut(s)	478
NgoMIV	GCCGGC	1 cut(s)	86
NlaIII	CATG	4 cut(s)	223, 465, 1058, 1078
NlaIV	GGNNCC	2 cut(s)	545, 573
NmuCI	GTSAC	3 cut(s)	5, 215, 554
OliI	CACNNNNGTG	1 cut(s)	785
PaeR7I	CTCGAG	1 cut(s)	1041
PdiI	GCCGGC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	6 cut(s)	202, 289, 470, 637, 989, 1013
PkrI	GCNGC	5 cut(s)	370, 948, 1155, 1158, 1161
PleI	GAGTC	1 cut(s)	841
PpsI	GAGTC	1 cut(s)	841
Psp124BI	GAGCTC	3 cut(s)	98, 486, 1124
Psp6I	CCWGG	1 cut(s)	547
PspFI	CCCAGC	1 cut(s)	630
PspGI	CCWGG	1 cut(s)	547
PspN4I	GGNNCC	2 cut(s)	545, 573
PspPI	GGNCC	2 cut(s)	131, 853
PstNI	CAGNNNCTG	1 cut(s)	956
PsuI	RGATCY	2 cut(s)	888, 1141
PvuII	CAGCTG	4 cut(s)	371, 644, 839, 1034
RsaI	GTAC	4 cut(s)	305, 318, 727, 791
RsaNI	GTAC	4 cut(s)	304, 317, 726, 790
RseI	CAYNNNNRTG	1 cut(s)	785
SacI	GAGCTC	3 cut(s)	98, 486, 1124
SaqAI	TTAA	5 cut(s)	240, 336, 426, 524, 872
SatI	GCNGC	5 cut(s)	369, 947, 1154, 1157, 1160
Sau96I	GGNCC	2 cut(s)	131, 853
ScaI	AGTACT	1 cut(s)	727
SchI	GAGTC	1 cut(s)	842
ScrFI	CCNGG	2 cut(s)	478, 549
SduI	GDGCHC	3 cut(s)	98, 486, 1124
SfaNI	GCATC	2 cut(s)	607, 745
Sfr274I	CTCGAG	1 cut(s)	1041
SinI	GGWCC	1 cut(s)	131
SlaI	CTCGAG	1 cut(s)	1041
SmiMI	CAYNNNNRTG	1 cut(s)	785
SmlI	CTYRAG	4 cut(s)	47, 91, 206, 1041
SmoI	CTYRAG	4 cut(s)	47, 91, 206, 1041
Sse9I	AATT	5 cut(s)	10, 251, 340, 825, 996
SsiI	CCGC	2 cut(s)	487, 1160
SspMI	CTAG	1 cut(s)	294
SstI	GAGCTC	3 cut(s)	98, 486, 1124
StyD4I	CCNGG	2 cut(s)	476, 547
StyI	CCWWGG	3 cut(s)	127, 139, 293
TaaI	ACNGT	6 cut(s)	245, 331, 421, 710, 730, 817
TaiI	ACGT	2 cut(s)	170, 879
TaqI	TCGA	3 cut(s)	456, 1042, 1089
TasI	AATT	5 cut(s)	10, 251, 340, 825, 996
TatI	WGTACW	1 cut(s)	725
TauI	GCSGC	1 cut(s)	1162
TfiI	GAWTC	6 cut(s)	202, 289, 470, 637, 989, 1013
Tru1I	TTAA	5 cut(s)	240, 336, 426, 524, 872
Tru9I	TTAA	5 cut(s)	240, 336, 426, 524, 872
TscAI	CASTG	3 cut(s)	105, 250, 820
TseFI	GTSAC	3 cut(s)	5, 215, 554
TseI	GCWGC	4 cut(s)	368, 946, 1153, 1156
Tsp45I	GTSAC	3 cut(s)	5, 215, 554
TspDTI	ATGAA	3 cut(s)	198, 927, 1002
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	3 cut(s)	105, 250, 820
VpaK11BI	GGWCC	1 cut(s)	131
XagI	CCTNNNNNAGG	1 cut(s)	1056
XhoI	CTCGAG	1 cut(s)	1041
XmaJI	CCTAGG	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	1 cut(s)	294
ZrmI	AGTACT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.