Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8343069.1

Orthogroup ID

OG0006590

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 889

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8343069.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 631 bp

acttgatgaacctgactgggcattgaatcttgagatttgtgatatgatcaatactgaaagagttaacagtgttgaattgatccgtggaataaaaaagcgcattatgttgaagaatcctagggttcagtacctttctttggtactgcttgaaacagttgttaaaaattgtgagaaggctttctcagagatagcagctgagagagttcttgatgagatggtgaaggtgattgatgaccctcagactgttgttaataatcgcaacaaggctttggtgctgatcgaagcatggggagaatcaaccggggagctccgctatctgcctgtttatgaggaaacatacaagagtttaagatcaagaggtattcggttccctggtcgtgacaacgagagtttggcacctattttcactccccctcgttcagtttcagcttcagagttagatgctggtctttcccagcagattccagttgatattcctgtgcaaagctttacccctgaacaatcaaaggaagcatttgacgttgcaagaaacagtattgagcttcttagtactgttttttcttcttcaccccaacaagatgctttacaggtaatttcatcttgttttcccacttgcatattccacttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007088 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030276 GO:0033043 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0045839 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

209

Amino Acids

23.57

Weight (kDa)

4.84

Isoelectric Point (pI)

51.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16880 AT5G16880 AT5G16880 AT5G16880
fragaria_vesca	FvH4_7g34030 FvH4_7g34030 FvH4_7g34030 FvH4_7g34030 FvH4_7g34030 FvH4_7g34030
malus_domestica	MD01G1236800.v1.1 MD07G1309400.v1.1
prunus_persica	Prupe.2G326800_v2.0.a1
pyrus_communis	pycom01g24450 pycom07g28140
rosa_chinensis	RchiOBHm_Chr1g0384291
rosa_laevigata	RLG00000026051
rosa_multiflora	Rmu_co8343069.1_g000001 Rmu_sc0016737.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276790
rosa_rugosa	Rorug01G0446500
rosa_samantha	Rh1AG472100 Rh1BG429700 Rh1CG442300 Rh1DG462400
rosa_wichuraiana	Rw1G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	395
AciI	CCGC	1 cut(s)	311
AclWI	GGATC	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	415
AfaI	GTAC	3 cut(s)	129, 142, 551
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	4 cut(s)	26, 75, 110, 150
AjnI	CCWGG	1 cut(s)	371
AluBI	AGCT	5 cut(s)	195, 308, 429, 487, 542
AluI	AGCT	5 cut(s)	195, 308, 429, 487, 542
Alw21I	GWGCWC	1 cut(s)	310
AlwI	GGATC	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	192
Asp700I	GAANNNNTTC	1 cut(s)	177
AspA2I	CCTAGG	1 cut(s)	117
AspLEI	GCGC	1 cut(s)	100
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	3 cut(s)	230, 236, 559
AvrII	CCTAGG	1 cut(s)	117
BanI	GGYRCC	1 cut(s)	395
BanII	GRGCYC	1 cut(s)	310
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	204
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	373
BclI	TGATCA	1 cut(s)	46
BcnI	CCSGG	1 cut(s)	302
BfaI	CTAG	1 cut(s)	118
BisI	GCNGC	1 cut(s)	193
BlnI	CCTAGG	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	194
BmcAI	AGTACT	1 cut(s)	551
Bme1390I	CCNGG	2 cut(s)	302, 373
BmiI	GGNNCC	2 cut(s)	369, 397
BmrFI	CCNGG	2 cut(s)	302, 373
BmrI	ACTGGG	1 cut(s)	26
BmsI	GCATC	2 cut(s)	431, 569
BmuI	ACTGGG	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	51
BpuMI	CCSGG	1 cut(s)	302
BsaJI	CCNNGG	4 cut(s)	83, 117, 301, 371
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse1I	ACTGG	2 cut(s)	21, 465
BseBI	CCWGG	1 cut(s)	373
BseDI	CCNNGG	4 cut(s)	83, 117, 301, 371
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	3 cut(s)	187, 196, 252
BseNI	ACTGG	2 cut(s)	21, 465
BseXI	GCAGC	1 cut(s)	204
BseYI	CCCAGC	1 cut(s)	454
BshNI	GGYRCC	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	301
BslI	CCNNNNNNNGG	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	4 cut(s)	46, 79, 277, 351
BspACI	CCGC	1 cut(s)	311
BspCNI	CTCAG	3 cut(s)	188, 195, 251
BspLI	GGNNCC	2 cut(s)	369, 397
BspPI	GGATC	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	395
BsrI	ACTGG	2 cut(s)	21, 465
BssECI	CCNNGG	4 cut(s)	83, 117, 301, 371
BssMI	GATC	4 cut(s)	46, 79, 277, 351
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	5 cut(s)	69, 155, 245, 534, 554
BstDEI	CTNAG	4 cut(s)	182, 196, 238, 546
BstDSI	CCRYGG	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	4 cut(s)	49, 82, 280, 354
BstMBI	GATC	4 cut(s)	46, 79, 277, 351
BstNI	CCWGG	1 cut(s)	373
BstSCI	CCNGG	2 cut(s)	300, 371
BstV1I	GCAGC	1 cut(s)	204
BtgI	CCRYGG	1 cut(s)	83
BtsIMutI	CAGTG	1 cut(s)	74
CfoI	GCGC	1 cut(s)	100
Csp6I	GTAC	3 cut(s)	128, 141, 550
CviAII	CATG	1 cut(s)	286
CviJI	RGCY	7 cut(s)	177, 195, 267, 308, 429, 487, 542
CviKI_1	RGCY	7 cut(s)	177, 195, 267, 308, 429, 487, 542
CviQI	GTAC	3 cut(s)	128, 141, 550
DdeI	CTNAG	4 cut(s)	182, 196, 238, 546
DpnI	GATC	4 cut(s)	48, 81, 279, 353
DpnII	GATC	4 cut(s)	46, 79, 277, 351
Ecl136II	GAGCTC	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	310
Eco53kI	GAGCTC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	415
EcoICRI	GAGCTC	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	371
EcoT14I	CCWWGG	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	1 cut(s)	289
FaiI	YATR	6 cut(s)	45, 105, 287, 328, 338, 618
FatI	CATG	1 cut(s)	285
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	193
FriOI	GRGCYC	1 cut(s)	310
Fsp4HI	GCNGC	1 cut(s)	193
FspBI	CTAG	1 cut(s)	118
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	193
GsaI	CCCAGC	1 cut(s)	458
HapII	CCGG	1 cut(s)	301
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	1 cut(s)	289
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HincII	GTYRAC	1 cut(s)	65
HindII	GTYRAC	1 cut(s)	65
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	4 cut(s)	26, 113, 294, 461
HpaI	GTTAAC	1 cut(s)	65
HpaII	CCGG	1 cut(s)	301
HphI	GGTGA	3 cut(s)	230, 236, 559
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188I	TCNGA	3 cut(s)	185, 241, 434
Hpy188III	TCNNGA	4 cut(s)	30, 207, 355, 378
Hpy8I	GTNNAC	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	167, 215
HpyCH4III	ACNGT	5 cut(s)	69, 155, 245, 534, 554
HpyCH4IV	ACGT	1 cut(s)	520
HpyCH4V	TGCA	3 cut(s)	482, 525, 616
HpyF3I	CTNAG	4 cut(s)	182, 196, 238, 546
HpySE526I	ACGT	1 cut(s)	520
Hsp92II	CATG	1 cut(s)	289
HspAI	GCGC	1 cut(s)	98
Ksp22I	TGATCA	1 cut(s)	46
KspAI	GTTAAC	1 cut(s)	65
Kzo9I	GATC	4 cut(s)	46, 79, 277, 351
LmnI	GCTCC	2 cut(s)	305, 313
Lsp1109I	GCAGC	1 cut(s)	204
LweI	GCATC	2 cut(s)	431, 569
MaeI	CTAG	1 cut(s)	118
MaeII	ACGT	1 cut(s)	520
MaeIII	GTNAC	1 cut(s)	378
MalI	GATC	4 cut(s)	48, 81, 279, 353
MboI	GATC	4 cut(s)	46, 79, 277, 351
MboII	GAAGA	3 cut(s)	122, 553, 556
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	3 cut(s)	75, 164, 592
MnlI	CCTC	4 cut(s)	247, 323, 351, 424
MroXI	GAANNNNTTC	1 cut(s)	177
MseI	TTAA	5 cut(s)	64, 160, 250, 348, 629
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	1 cut(s)	301
MspR9I	CCNGG	2 cut(s)	302, 373
MvaI	CCWGG	1 cut(s)	373
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	4 cut(s)	46, 79, 277, 351
NlaIII	CATG	1 cut(s)	289
NlaIV	GGNNCC	2 cut(s)	369, 397
NmuCI	GTSAC	1 cut(s)	378
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	4 cut(s)	26, 113, 294, 461
PkrI	GCNGC	1 cut(s)	194
Psp124BI	GAGCTC	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	371
PspFI	CCCAGC	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	369, 397
PvuII	CAGCTG	1 cut(s)	195
RsaI	GTAC	3 cut(s)	129, 142, 551
RsaNI	GTAC	3 cut(s)	128, 141, 550
SacI	GAGCTC	1 cut(s)	310
SaqAI	TTAA	5 cut(s)	64, 160, 250, 348, 629
SatI	GCNGC	1 cut(s)	193
Sau3AI	GATC	4 cut(s)	46, 79, 277, 351
ScaI	AGTACT	1 cut(s)	551
ScrFI	CCNGG	2 cut(s)	302, 373
SduI	GDGCHC	1 cut(s)	310
SfaNI	GCATC	2 cut(s)	431, 569
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
Sse9I	AATT	3 cut(s)	75, 164, 592
SsiI	CCGC	1 cut(s)	311
SspMI	CTAG	1 cut(s)	118
SstI	GAGCTC	1 cut(s)	310
StyD4I	CCNGG	2 cut(s)	300, 371
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	5 cut(s)	69, 155, 245, 534, 554
TaiI	ACGT	1 cut(s)	523
TaqI	TCGA	1 cut(s)	280
TasI	AATT	3 cut(s)	75, 164, 592
TatI	WGTACW	1 cut(s)	549
TfiI	GAWTC	4 cut(s)	26, 113, 294, 461
Tru1I	TTAA	5 cut(s)	64, 160, 250, 348, 629
Tru9I	TTAA	5 cut(s)	64, 160, 250, 348, 629
TscAI	CASTG	1 cut(s)	74
TseFI	GTSAC	1 cut(s)	378
TseI	GCWGC	1 cut(s)	192
Tsp45I	GTSAC	1 cut(s)	378
TspDTI	ATGAA	2 cut(s)	22, 586
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	1 cut(s)	74
XmaJI	CCTAGG	1 cut(s)	117
XmnI	GAANNNNTTC	1 cut(s)	177
XspI	CTAG	1 cut(s)	118
ZrmI	AGTACT	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.