Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006590

Physical Location & Seq

Genomic Coordinates Reverse (-)

21386374 .. 21388378

Gene Structure 2005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g24450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGTTGAAGAATCCTAGGGTCCAGTACCTTGTGCTAGTGCTGCTTGAAACATGTGTTAAGAACTGTGAAAAGGCTTTCTCTGAAATAGCAGCAGAGAGAGTTCTTGATGAGATGGTGAAGCTGATTGACGACCCTCAGACTGTTGTTAATAATCGCAATAAAGCTTTGATGCTGATCGAAGCATGGGGGGAATTGACCGGTGAGCTCCGCTATTTACCTGTTTACGAGGAAACATACAAGAGTTTAAGATCAAGGGGTATTCGGTTTCCCGGTCGCGACAATGAGAGTTTGGCACCAATATTCACTCCCCCTCGTTCAGTTTCTGCTTCAGAGTCAGATGCTAGTTTTTCCCAGCAGATTCCGGTTGAGATTGCTGCTCAAAGCTTTACGGCTGAACAACCAAAGGAAGCATTTGATGTTGCAAGAAACAGTATTGAGCTACTTAATACTGTTTTCTCCTCTTCACCCCAACAAGATGCTTTACAGGATGACTTGACGACCACACTTGTACAACAGTGTCGTCAATCTCTATCCACTGTCCAGAGAATTATAGAGACAGCTGGAGAGAACGAGGCCTTGCTGTTTGAAGCGTTGAATGTGAATGATGAGATCCATAAAGCTCTATCCAAGTATGAAGAACTGATAAGGCCTTCAGTTGTTCCAACTGCGCCAGAACCTGCAATGATACCCGTAGCTGTGGAGCCTGATGAATCACTATGTCATGCGAAAGAGGATTCCTTGATTAGAAAACCAGCTGCTTCTCGAGGTTTGGTTCATGCAGGGAGCAACGATGACATGATGGATGATCTTGATGAGATGATATTTGGCAAGAAAGGTGGAAGTTCATCTGAAGGAAGCCAAGATCCGAAGAAGCAGCAGACGCCAGCAAAGGATGACCTTATCAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007088 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030276 GO:0033043 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0045839 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

304

Amino Acids

33.55

Weight (kDa)

4.66

Isoelectric Point (pI)

54.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16880 AT5G16880 AT5G16880 AT5G16880
fragaria_vesca	FvH4_7g34030 FvH4_7g34030 FvH4_7g34030 FvH4_7g34030 FvH4_7g34030 FvH4_7g34030
malus_domestica	MD01G1236800.v1.1 MD07G1309400.v1.1
prunus_persica	Prupe.2G326800_v2.0.a1
pyrus_communis	pycom01g24450 pycom07g28140
rosa_chinensis	RchiOBHm_Chr1g0384291
rosa_laevigata	RLG00000026051
rosa_multiflora	Rmu_co8343069.1_g000001 Rmu_sc0016737.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276790
rosa_rugosa	Rorug01G0446500
rosa_samantha	Rh1AG472100 Rh1BG429700 Rh1CG442300 Rh1DG462400
rosa_wichuraiana	Rw1G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	685
AccB1I	GGYRCC	1 cut(s)	292
AccII	CGCG	1 cut(s)	276
AciI	CCGC	1 cut(s)	208
AclWI	GGATC	2 cut(s)	604, 857
AcuI	CTGAAG	3 cut(s)	312, 636, 870
AcyI	GRCGYC	1 cut(s)	881
AfaI	GTAC	2 cut(s)	26, 510
AflIII	ACRYGT	1 cut(s)	50
AgeI	ACCGGT	1 cut(s)	197
AgsI	TTSAA	4 cut(s)	7, 47, 587, 595
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	548
AlwI	GGATC	2 cut(s)	604, 857
AlwNI	CAGNNNCTG	2 cut(s)	323, 677
Ama87I	CYCGRG	1 cut(s)	762
AoxI	GGCC	2 cut(s)	573, 647
ApeKI	GCWGC	5 cut(s)	40, 89, 374, 755, 874
AsiGI	ACCGGT	1 cut(s)	197
AspA2I	CCTAGG	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	670
AspS9I	GGNCC	1 cut(s)	19
AsuC2I	CCSGG	1 cut(s)	270
AsuHPI	GGTGA	3 cut(s)	127, 212, 456
AvaI	CYCGRG	1 cut(s)	762
AvaII	GGWCC	1 cut(s)	19
AvrII	CCTAGG	1 cut(s)	14
BanI	GGYRCC	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	5 cut(s)	27, 101, 361, 742, 886
BccI	CCATC	2 cut(s)	106, 793
BceAI	ACGGC	1 cut(s)	405
BcnI	CCSGG	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	548
BfaI	CTAG	3 cut(s)	15, 35, 342
BfuAI	ACCTGC	1 cut(s)	685
BisI	GCNGC	5 cut(s)	41, 90, 375, 756, 875
BlnI	CCTAGG	1 cut(s)	14
BlsI	GCNGC	5 cut(s)	42, 91, 376, 757, 876
Bme1390I	CCNGG	1 cut(s)	270
Bme18I	GGWCC	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	762
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	3 cut(s)	20, 294, 702
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	3 cut(s)	159, 328, 466
BpmI	CTGGAG	1 cut(s)	582
BpuMI	CCSGG	1 cut(s)	270
BsaBI	GATNNNNATC	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	881
BsaJI	CCNNGG	1 cut(s)	14
BsaWI	WCCGGW	2 cut(s)	197, 361
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	687
Bse8I	GATNNNNATC	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	14
BseGI	GGATG	3 cut(s)	493, 808, 898
BseJI	GATNNNNATC	1 cut(s)	173
BseMI	GCAATG	1 cut(s)	687
BseMII	CTCAG	1 cut(s)	149
BseNI	ACTGG	1 cut(s)	22
BseRI	GAGGAG	1 cut(s)	448
BseXI	GCAGC	5 cut(s)	27, 101, 361, 742, 886
BseYI	CCCAGC	1 cut(s)	351
Bsh1236I	CGCG	1 cut(s)	276
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	2 cut(s)	575, 649
BshNI	GGYRCC	1 cut(s)	292
BshTI	ACCGGT	1 cut(s)	197
BsiEI	CGRYCG	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	762
BsiSI	CCGG	3 cut(s)	198, 270, 362
BsmAI	GTCTC	1 cut(s)	548
BsnI	GGCC	2 cut(s)	575, 649
BsoBI	CYCGRG	1 cut(s)	762
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp1407I	TGTACA	1 cut(s)	508
Bsp143I	GATC	5 cut(s)	174, 248, 609, 805, 862
Bsp68I	TCGCGA	1 cut(s)	276
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	2 cut(s)	575, 649
BspCNI	CTCAG	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	3 cut(s)	20, 294, 702
BspMI	ACCTGC	1 cut(s)	685
BspPI	GGATC	2 cut(s)	604, 857
BspT107I	GGYRCC	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	687
BsrFI	RCCGGY	1 cut(s)	197
BsrGI	TGTACA	1 cut(s)	508
BsrI	ACTGG	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	5 cut(s)	174, 248, 609, 805, 862
BssNI	GRCGYC	1 cut(s)	881
BssT1I	CCWWGG	1 cut(s)	14
Bst4CI	ACNGT	6 cut(s)	65, 142, 431, 451, 516, 538
Bst6I	CTCTTC	1 cut(s)	466
BstACI	GRCGYC	1 cut(s)	881
BstAUI	TGTACA	1 cut(s)	508
BstC8I	GCNNGC	1 cut(s)	885
BstDEI	CTNAG	1 cut(s)	135
BstF5I	GGATG	3 cut(s)	493, 808, 898
BstFNI	CGCG	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	670
BstKTI	GATC	5 cut(s)	177, 251, 612, 808, 865
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	5 cut(s)	174, 248, 609, 805, 862
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 880
BstNSI	RCATGY	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	268
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	5 cut(s)	27, 101, 361, 742, 886
BstX2I	RGATCY	2 cut(s)	609, 862
BstYI	RGATCY	2 cut(s)	609, 862
BsuRI	GGCC	2 cut(s)	575, 649
BtsCI	GGATG	3 cut(s)	493, 808, 898
BtsIMutI	CAGTG	2 cut(s)	521, 534
BtuMI	TCGCGA	1 cut(s)	276
BveI	ACCTGC	1 cut(s)	685
Cac8I	GCNNGC	1 cut(s)	885
CaiI	CAGNNNCTG	2 cut(s)	323, 677
CfoI	GCGC	1 cut(s)	670
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	19
CseI	GACGC	1 cut(s)	889
Csp6I	GTAC	2 cut(s)	25, 509
CspAI	ACCGGT	1 cut(s)	197
CspCI	CAANNNNNGTGG	2 cut(s)	817, 852
CviAII	CATG	5 cut(s)	51, 183, 722, 776, 796
CviQI	GTAC	2 cut(s)	25, 509
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	5 cut(s)	176, 250, 611, 807, 864
DpnII	GATC	5 cut(s)	174, 248, 609, 805, 862
Eam1104I	CTCTTC	1 cut(s)	466
EarI	CTCTTC	1 cut(s)	466
Ecl136II	GAGCTC	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	14
Eco147I	AGGCCT	2 cut(s)	575, 649
Eco24I	GRGCYC	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	19
Eco53kI	GAGCTC	1 cut(s)	205
Eco57I	CTGAAG	3 cut(s)	312, 636, 870
Eco88I	CYCGRG	1 cut(s)	762
EcoICRI	GAGCTC	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	14
EcoT38I	GRGCYC	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	14
FaeI	CATG	5 cut(s)	54, 186, 725, 779, 799
FatI	CATG	5 cut(s)	50, 182, 721, 775, 795
Fnu4HI	GCNGC	5 cut(s)	41, 90, 375, 756, 875
FokI	GGATG	3 cut(s)	500, 815, 905
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	5 cut(s)	41, 90, 375, 756, 875
FspBI	CTAG	3 cut(s)	15, 35, 342
GlaI	GCGC	1 cut(s)	669
GluI	GCNGC	5 cut(s)	41, 90, 375, 756, 875
GsaI	CCCAGC	1 cut(s)	355
GsuI	CTGGAG	1 cut(s)	582
HaeIII	GGCC	2 cut(s)	575, 649
HapII	CCGG	3 cut(s)	198, 270, 362
HgaI	GACGC	1 cut(s)	889
HhaI	GCGC	1 cut(s)	670
Hin1I	GRCGYC	1 cut(s)	881
Hin1II	CATG	5 cut(s)	54, 186, 725, 779, 799
Hin6I	GCGC	1 cut(s)	668
HinP1I	GCGC	1 cut(s)	668
HindIII	AAGCTT	2 cut(s)	162, 382
HinfI	GANTC	5 cut(s)	10, 332, 358, 710, 734
HpaII	CCGG	3 cut(s)	198, 270, 362
HphI	GGTGA	3 cut(s)	127, 212, 456
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	6 cut(s)	82, 138, 331, 337, 850, 867
Hpy188III	TCNNGA	5 cut(s)	104, 275, 541, 762, 809
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	2 cut(s)	660, 845
HpyCH4III	ACNGT	6 cut(s)	65, 142, 431, 451, 516, 538
HpyCH4V	TGCA	3 cut(s)	422, 680, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 880
HpyF3I	CTNAG	1 cut(s)	135
Hsp92I	GRCGYC	1 cut(s)	881
Hsp92II	CATG	5 cut(s)	54, 186, 725, 779, 799
HspAI	GCGC	1 cut(s)	668
Kzo9I	GATC	5 cut(s)	174, 248, 609, 805, 862
LmnI	GCTCC	3 cut(s)	210, 700, 783
Lsp1109I	GCAGC	5 cut(s)	27, 101, 361, 742, 886
LweI	GCATC	3 cut(s)	159, 328, 466
MaeI	CTAG	3 cut(s)	15, 35, 342
MalI	GATC	5 cut(s)	176, 250, 611, 807, 864
MboI	GATC	5 cut(s)	174, 248, 609, 805, 862
MboII	GAAGA	4 cut(s)	19, 453, 647, 880
MflI	RGATCY	2 cut(s)	609, 862
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	2 cut(s)	191, 546
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	686
MnlI	CCTC	7 cut(s)	144, 220, 321, 469, 565, 724, 758
MseI	TTAA	4 cut(s)	57, 147, 245, 444
MspA1I	CMGCKG	2 cut(s)	560, 755
MspI	CCGG	3 cut(s)	198, 270, 362
MspR9I	CCNGG	1 cut(s)	270
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	2 cut(s)	40, 880
NciI	CCSGG	1 cut(s)	270
NdeII	GATC	5 cut(s)	174, 248, 609, 805, 862
NlaIII	CATG	5 cut(s)	54, 186, 725, 779, 799
NlaIV	GGNNCC	3 cut(s)	20, 294, 702
NruI	TCGCGA	1 cut(s)	276
NspI	RCATGY	1 cut(s)	54
PaeR7I	CTCGAG	1 cut(s)	762
PceI	AGGCCT	2 cut(s)	575, 649
PciI	ACATGT	1 cut(s)	50
PfeI	GAWTC	4 cut(s)	10, 358, 710, 734
PinAI	ACCGGT	1 cut(s)	197
PkrI	GCNGC	5 cut(s)	42, 91, 376, 757, 876
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
PscI	ACATGT	1 cut(s)	50
Psp124BI	GAGCTC	1 cut(s)	207
PspFI	CCCAGC	1 cut(s)	351
PspN4I	GGNNCC	3 cut(s)	20, 294, 702
PspPI	GGNCC	1 cut(s)	19
PstNI	CAGNNNCTG	2 cut(s)	323, 677
PsuI	RGATCY	2 cut(s)	609, 862
PvuII	CAGCTG	2 cut(s)	560, 755
RruI	TCGCGA	1 cut(s)	276
RsaI	GTAC	2 cut(s)	26, 510
RsaNI	GTAC	2 cut(s)	25, 509
SacI	GAGCTC	1 cut(s)	207
SaqAI	TTAA	4 cut(s)	57, 147, 245, 444
SatI	GCNGC	5 cut(s)	41, 90, 375, 756, 875
Sau3AI	GATC	5 cut(s)	174, 248, 609, 805, 862
Sau96I	GGNCC	1 cut(s)	19
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	1 cut(s)	207
SfaNI	GCATC	3 cut(s)	159, 328, 466
Sfr274I	CTCGAG	1 cut(s)	762
SinI	GGWCC	1 cut(s)	19
SlaI	CTCGAG	1 cut(s)	762
SmlI	CTYRAG	1 cut(s)	762
SmoI	CTYRAG	1 cut(s)	762
Sse9I	AATT	2 cut(s)	191, 546
SseBI	AGGCCT	2 cut(s)	575, 649
SsiI	CCGC	1 cut(s)	208
SspI	AATATT	1 cut(s)	300
SspMI	CTAG	3 cut(s)	15, 35, 342
SstI	GAGCTC	1 cut(s)	207
StuI	AGGCCT	2 cut(s)	575, 649
StyD4I	CCNGG	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	6 cut(s)	65, 142, 431, 451, 516, 538
TaqI	TCGA	2 cut(s)	177, 763
TasI	AATT	2 cut(s)	191, 546
TatI	WGTACW	1 cut(s)	508
TfiI	GAWTC	4 cut(s)	10, 358, 710, 734
Tru1I	TTAA	4 cut(s)	57, 147, 245, 444
Tru9I	TTAA	4 cut(s)	57, 147, 245, 444
TscAI	CASTG	2 cut(s)	521, 541
TseI	GCWGC	5 cut(s)	40, 89, 374, 755, 874
TspDTI	ATGAA	4 cut(s)	648, 723, 764, 834
TspRI	CASTG	2 cut(s)	521, 541
VpaK11BI	GGWCC	1 cut(s)	19
XceI	RCATGY	1 cut(s)	54
XhoI	CTCGAG	1 cut(s)	762
XmaJI	CCTAGG	1 cut(s)	14
XspI	CTAG	3 cut(s)	15, 35, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.