Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006590

Physical Location & Seq

Genomic Coordinates Reverse (-)

27588577 .. 27590476

Gene Structure 1900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g28140.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGCTGCTTGAAACATGTGTTAAGAACTGTGAAAAGGCTTTCTCAGAAATAGCTGCGGAGAGAGTTCTTGATGAGATGGTGAAGCTGATTGACGACCCTCAGACTGTTGTTAATAATCGCAATAAAGCTTTGATGCTGATCGAAGCATGGGGGGAATCGACCGGTGAGCTCCGGTATTTGCCTGTTTATGAGGAAACATACAAGAGTTTAAGATCAAGGGGTATTCGGTTTCCCGGTCGCGACAATGAGAGCTTGGCACCAATATTCACTCCCCCTCGTTCAGTTTCTGCTTCAGAATCAGATGCTAGTTTTTCCCAGCAGATTCCGGTTGAGATTCCTGCTCAAAGCTTTACGGCTGAACAAACAAAGGAAGCATTTGATGTTGCAAGAAACAGTATTGAGCTTCTTAATACTGTTTTCTCCTCTTCACCCCAACAAGATGCTTTACAGGATGACTTGACGGCCACACTTGTACAGCAGTGCCGCCAATCTCTATCCACTGTCCAGAGAATTATAGAGACAGCTGGAGAGAACGAGGCCTTGCTGTTTGAAGCATTGAATGTGAATGATGAGATCCATAAGGCTCTGTCCAAGTATGAAGAACTGATAAGGCCTTCAGTTGTTCCAACTGCACCAGAACCTGCAATGATACCTGTTGCTGTGGAGCCAGATGAATCGCCAAGTCGTGTGAGAGAGGATTACTTGATTAGAAAACCAGCTGCTTCTCGAGGTTTGGTTCATGCAGGGAGCAACGATGACATGATGGATGATCTTGATGAGATGATATTTGGCAAGAAAGGTGGAAGTTCATCTGAAGGAAGCCAAGATCCAAAGAAGCAGCAGACGCCAGCAAAGGATGACCTGATCAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007088 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030276 GO:0033043 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0045839 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

292

Amino Acids

32.22

Weight (kDa)

4.58

Isoelectric Point (pI)

59.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16880 AT5G16880 AT5G16880 AT5G16880
fragaria_vesca	FvH4_7g34030 FvH4_7g34030 FvH4_7g34030 FvH4_7g34030 FvH4_7g34030 FvH4_7g34030
malus_domestica	MD01G1236800.v1.1 MD07G1309400.v1.1
prunus_persica	Prupe.2G326800_v2.0.a1
pyrus_communis	pycom01g24450 pycom07g28140
rosa_chinensis	RchiOBHm_Chr1g0384291
rosa_laevigata	RLG00000026051
rosa_multiflora	Rmu_co8343069.1_g000001 Rmu_sc0016737.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276790
rosa_rugosa	Rorug01G0446500
rosa_samantha	Rh1AG472100 Rh1BG429700 Rh1CG442300 Rh1DG462400
rosa_wichuraiana	Rw1G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	649
AccB1I	GGYRCC	1 cut(s)	256
AccII	CGCG	1 cut(s)	240
AciI	CCGC	2 cut(s)	56, 484
AclWI	GGATC	2 cut(s)	568, 821
AcoI	YGGCCR	1 cut(s)	462
AcuI	CTGAAG	3 cut(s)	276, 600, 834
AcyI	GRCGYC	1 cut(s)	845
AfaI	GTAC	1 cut(s)	474
AflIII	ACRYGT	1 cut(s)	14
AgeI	ACCGGT	1 cut(s)	161
AgsI	TTSAA	3 cut(s)	11, 551, 559
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	512
AlwI	GGATC	2 cut(s)	568, 821
AlwNI	CAGNNNCTG	2 cut(s)	287, 641
Ama87I	CYCGRG	1 cut(s)	726
AoxI	GGCC	3 cut(s)	462, 537, 611
ApeKI	GCWGC	4 cut(s)	4, 53, 719, 838
AsiGI	ACCGGT	1 cut(s)	161
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	3 cut(s)	91, 176, 420
AvaI	CYCGRG	1 cut(s)	726
BanI	GGYRCC	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	3 cut(s)	40, 706, 850
BccI	CCATC	2 cut(s)	70, 757
BceAI	ACGGC	2 cut(s)	369, 477
BclI	TGATCA	1 cut(s)	864
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	1 cut(s)	512
BfaI	CTAG	1 cut(s)	306
BfuAI	ACCTGC	1 cut(s)	649
BisI	GCNGC	5 cut(s)	5, 54, 484, 720, 839
BlsI	GCNGC	5 cut(s)	6, 55, 485, 721, 840
Bme1390I	CCNGG	1 cut(s)	234
BmeT110I	CYCGRG	1 cut(s)	726
BmiI	GGNNCC	2 cut(s)	258, 666
BmrFI	CCNGG	1 cut(s)	234
BmsI	GCATC	3 cut(s)	123, 292, 430
BpmI	CTGGAG	1 cut(s)	546
BpuMI	CCSGG	1 cut(s)	234
BsaBI	GATNNNNATC	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	845
BsaWI	WCCGGW	3 cut(s)	161, 171, 325
Bse118I	RCCGGY	1 cut(s)	161
Bse3DI	GCAATG	1 cut(s)	651
Bse8I	GATNNNNATC	1 cut(s)	137
BseGI	GGATG	3 cut(s)	457, 772, 862
BseJI	GATNNNNATC	1 cut(s)	137
BseMI	GCAATG	1 cut(s)	651
BseMII	CTCAG	2 cut(s)	57, 113
BseRI	GAGGAG	1 cut(s)	412
BseXI	GCAGC	3 cut(s)	40, 706, 850
BseYI	CCCAGC	1 cut(s)	315
BsgI	GTGCAG	1 cut(s)	615
Bsh1236I	CGCG	1 cut(s)	240
Bsh1285I	CGRYCG	2 cut(s)	162, 238
BshFI	GGCC	3 cut(s)	464, 539, 613
BshNI	GGYRCC	1 cut(s)	256
BshTI	ACCGGT	1 cut(s)	161
BsiEI	CGRYCG	2 cut(s)	162, 238
BsiHKAI	GWGCWC	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	726
BsiSI	CCGG	4 cut(s)	162, 172, 234, 326
BsmAI	GTCTC	1 cut(s)	512
BsnI	GGCC	3 cut(s)	464, 539, 613
BsoBI	CYCGRG	1 cut(s)	726
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp1407I	TGTACA	1 cut(s)	472
Bsp143I	GATC	6 cut(s)	138, 212, 573, 769, 826, 864
Bsp68I	TCGCGA	1 cut(s)	240
BspACI	CCGC	2 cut(s)	56, 484
BspANI	GGCC	3 cut(s)	464, 539, 613
BspCNI	CTCAG	2 cut(s)	56, 112
BspFNI	CGCG	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	258, 666
BspMI	ACCTGC	1 cut(s)	649
BspPI	GGATC	2 cut(s)	568, 821
BspT107I	GGYRCC	1 cut(s)	256
BsrDI	GCAATG	1 cut(s)	651
BsrFI	RCCGGY	1 cut(s)	161
BsrGI	TGTACA	1 cut(s)	472
BssAI	RCCGGY	1 cut(s)	161
BssMI	GATC	6 cut(s)	138, 212, 573, 769, 826, 864
BssNI	GRCGYC	1 cut(s)	845
Bst4CI	ACNGT	5 cut(s)	29, 106, 395, 415, 502
Bst6I	CTCTTC	1 cut(s)	430
BstACI	GRCGYC	1 cut(s)	845
BstAUI	TGTACA	1 cut(s)	472
BstC8I	GCNNGC	1 cut(s)	849
BstDEI	CTNAG	2 cut(s)	43, 99
BstF5I	GGATG	3 cut(s)	457, 772, 862
BstFNI	CGCG	1 cut(s)	240
BstKTI	GATC	6 cut(s)	141, 215, 576, 772, 829, 867
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	6 cut(s)	138, 212, 573, 769, 826, 864
BstMCI	CGRYCG	2 cut(s)	162, 238
BstMWI	GCNNNNNNNGC	1 cut(s)	844
BstNSI	RCATGY	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	232
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	3 cut(s)	40, 706, 850
BstX2I	RGATCY	2 cut(s)	573, 826
BstYI	RGATCY	2 cut(s)	573, 826
BsuRI	GGCC	3 cut(s)	464, 539, 613
BtsCI	GGATG	3 cut(s)	457, 772, 862
BtsI	GCAGTG	1 cut(s)	485
BtsIMutI	CAGTG	2 cut(s)	485, 498
BtuMI	TCGCGA	1 cut(s)	240
BveI	ACCTGC	1 cut(s)	649
Cac8I	GCNNGC	1 cut(s)	849
CaiI	CAGNNNCTG	2 cut(s)	287, 641
Cfr10I	RCCGGY	1 cut(s)	161
CseI	GACGC	1 cut(s)	853
Csp6I	GTAC	1 cut(s)	473
CspAI	ACCGGT	1 cut(s)	161
CspCI	CAANNNNNGTGG	2 cut(s)	781, 816
CviAII	CATG	4 cut(s)	15, 147, 740, 760
CviQI	GTAC	1 cut(s)	473
DdeI	CTNAG	2 cut(s)	43, 99
DpnI	GATC	6 cut(s)	140, 214, 575, 771, 828, 866
DpnII	GATC	6 cut(s)	138, 212, 573, 769, 826, 864
EaeI	YGGCCR	1 cut(s)	462
Eam1104I	CTCTTC	1 cut(s)	430
EarI	CTCTTC	1 cut(s)	430
Ecl136II	GAGCTC	1 cut(s)	169
Eco147I	AGGCCT	2 cut(s)	539, 613
Eco24I	GRGCYC	1 cut(s)	171
Eco53kI	GAGCTC	1 cut(s)	169
Eco57I	CTGAAG	3 cut(s)	276, 600, 834
Eco88I	CYCGRG	1 cut(s)	726
EcoICRI	GAGCTC	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	171
FaeI	CATG	4 cut(s)	18, 150, 743, 763
FaiI	YATR	9 cut(s)	16, 148, 189, 199, 515, 579, 597, 741, 761
FatI	CATG	4 cut(s)	14, 146, 739, 759
FbaI	TGATCA	1 cut(s)	864
Fnu4HI	GCNGC	5 cut(s)	5, 54, 484, 720, 839
FokI	GGATG	3 cut(s)	464, 779, 869
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	5 cut(s)	5, 54, 484, 720, 839
FspBI	CTAG	1 cut(s)	306
GluI	GCNGC	5 cut(s)	5, 54, 484, 720, 839
GsaI	CCCAGC	1 cut(s)	319
GsuI	CTGGAG	1 cut(s)	546
HaeIII	GGCC	3 cut(s)	464, 539, 613
HapII	CCGG	4 cut(s)	162, 172, 234, 326
HgaI	GACGC	1 cut(s)	853
Hin1I	GRCGYC	1 cut(s)	845
Hin1II	CATG	4 cut(s)	18, 150, 743, 763
HindIII	AAGCTT	2 cut(s)	126, 346
HinfI	GANTC	5 cut(s)	155, 296, 322, 334, 674
HpaII	CCGG	4 cut(s)	162, 172, 234, 326
HphI	GGTGA	3 cut(s)	91, 176, 420
Hpy188I	TCNGA	5 cut(s)	46, 102, 295, 301, 814
Hpy188III	TCNNGA	5 cut(s)	68, 239, 505, 726, 773
HpyAV	CCTTC	2 cut(s)	624, 809
HpyCH4III	ACNGT	5 cut(s)	29, 106, 395, 415, 502
HpyCH4V	TGCA	4 cut(s)	386, 632, 644, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	844
HpyF3I	CTNAG	2 cut(s)	43, 99
Hsp92I	GRCGYC	1 cut(s)	845
Hsp92II	CATG	4 cut(s)	18, 150, 743, 763
Ksp22I	TGATCA	1 cut(s)	864
Kzo9I	GATC	6 cut(s)	138, 212, 573, 769, 826, 864
LmnI	GCTCC	3 cut(s)	174, 664, 747
Lsp1109I	GCAGC	3 cut(s)	40, 706, 850
LweI	GCATC	3 cut(s)	123, 292, 430
MaeI	CTAG	1 cut(s)	306
MalI	GATC	6 cut(s)	140, 214, 575, 771, 828, 866
MboI	GATC	6 cut(s)	138, 212, 573, 769, 826, 864
MboII	GAAGA	2 cut(s)	417, 611
MflI	RGATCY	2 cut(s)	573, 826
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	1 cut(s)	510
MmeI	TCCRAC	1 cut(s)	650
MnlI	CCTC	7 cut(s)	108, 184, 285, 433, 529, 688, 722
MseI	TTAA	4 cut(s)	21, 111, 209, 408
MspA1I	CMGCKG	2 cut(s)	524, 719
MspI	CCGG	4 cut(s)	162, 172, 234, 326
MspR9I	CCNGG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	844
NciI	CCSGG	1 cut(s)	234
NdeII	GATC	6 cut(s)	138, 212, 573, 769, 826, 864
NlaIII	CATG	4 cut(s)	18, 150, 743, 763
NlaIV	GGNNCC	2 cut(s)	258, 666
NruI	TCGCGA	1 cut(s)	240
NspI	RCATGY	1 cut(s)	18
PaeR7I	CTCGAG	1 cut(s)	726
PceI	AGGCCT	2 cut(s)	539, 613
PciI	ACATGT	1 cut(s)	14
PfeI	GAWTC	5 cut(s)	155, 296, 322, 334, 674
PinAI	ACCGGT	1 cut(s)	161
PkrI	GCNGC	5 cut(s)	6, 55, 485, 721, 840
PscI	ACATGT	1 cut(s)	14
Psp124BI	GAGCTC	1 cut(s)	171
PspFI	CCCAGC	1 cut(s)	315
PspN4I	GGNNCC	2 cut(s)	258, 666
PstNI	CAGNNNCTG	2 cut(s)	287, 641
PsuI	RGATCY	2 cut(s)	573, 826
PvuII	CAGCTG	2 cut(s)	524, 719
RruI	TCGCGA	1 cut(s)	240
RsaI	GTAC	1 cut(s)	474
RsaNI	GTAC	1 cut(s)	473
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	4 cut(s)	21, 111, 209, 408
SatI	GCNGC	5 cut(s)	5, 54, 484, 720, 839
Sau3AI	GATC	6 cut(s)	138, 212, 573, 769, 826, 864
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	1 cut(s)	171
SfaNI	GCATC	3 cut(s)	123, 292, 430
Sfr274I	CTCGAG	1 cut(s)	726
SlaI	CTCGAG	1 cut(s)	726
SmlI	CTYRAG	1 cut(s)	726
SmoI	CTYRAG	1 cut(s)	726
Sse9I	AATT	1 cut(s)	510
SseBI	AGGCCT	2 cut(s)	539, 613
SsiI	CCGC	2 cut(s)	56, 484
SspI	AATATT	1 cut(s)	264
SspMI	CTAG	1 cut(s)	306
SstI	GAGCTC	1 cut(s)	171
StuI	AGGCCT	2 cut(s)	539, 613
StyD4I	CCNGG	1 cut(s)	232
TaaI	ACNGT	5 cut(s)	29, 106, 395, 415, 502
TaqI	TCGA	3 cut(s)	141, 158, 727
TasI	AATT	1 cut(s)	510
TatI	WGTACW	1 cut(s)	472
TauI	GCSGC	1 cut(s)	486
TfiI	GAWTC	5 cut(s)	155, 296, 322, 334, 674
Tru1I	TTAA	4 cut(s)	21, 111, 209, 408
Tru9I	TTAA	4 cut(s)	21, 111, 209, 408
TscAI	CASTG	2 cut(s)	485, 505
TseI	GCWGC	4 cut(s)	4, 53, 719, 838
TspDTI	ATGAA	4 cut(s)	612, 687, 728, 798
TspRI	CASTG	2 cut(s)	485, 505
XceI	RCATGY	1 cut(s)	18
XhoI	CTCGAG	1 cut(s)	726
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.