MD07G1309400.v1.1

TOM1-like protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
36468505 .. 36471825
3321 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1309400.v1.1.491

Sequence Viewer

Length: 1191 bp
ATGAGTGACAATTTGATGGAGAAAGTGAGCGCTCTTGGCGAGCGCCTCAAGATCGAAGGCACTGAGGTCGGTCGAAAAATGAGTGCTGGATTTAGCTCAGTGAGCTTCAAGGTGAAGGAGCTCTTCCAAGGCCCAAACCAAGCAGATAAGATCGTTGAAGATGCCACATCAGAGGCACTCGAAGAACCTGACTGGGCTATGAATCTTGAAATTTGCGACATGATCAATACTGAAAGAGTTAACAGTGTTGAATTGATTCGTGGGCTGAAAAAGCGGATTACGTTGAAGAATCCTAGGGTCCAGTACCTTGCGCTAATGCTGCTTGAAACATGTGTTAAGAACTGTGAAAAGGCTTTCTCAGAAATAGCTGCGGAGAGAGTTCTTGATGAGATGGTGAAGCTGATTGACGACCCTCAGACTGTTGTTAATAATCGCAATAAAGCTTTGATGCTGATCGAAGCATGGGGGGAATCAACCGGTGAGCTCCGGTATTTGCCTGTTTATGAGGAAACATACAAGAGTTTAAGATCAAGGGGTATTCGGTTTCCTGGTCGCGACAATGAGAGTTTGGCACCAATATTCACTCCCCCTCGTTCAGTTTCTGCTTCAGAGTCGGATGCTAGTTTTTCCCAGCAGATTCCGGTTGAGATTCCTGCTCAAAGCTTTACGGGTGAACAAACAAAGGAAGCATTTGATGTTGCAAGAAACAGTATTGAGCTTCTTAATACTGTTTTCTCCTCTTCACCCCAACAAGATGCTTTACAGGATGACTTGACGGCCACACTTGTACAGCAGTGCCGCCAATCTCTATCCACTGTCCAGAGAATTATAGAGACAGCTGGAGAGAACGAGGCCTTGCTGTTTGAAGCATTGAATGTGAATGATGAGATCCATAAGGCTCTATCCAAGTATGAAGAACTGATAAGGCCTTCAGTAGTTCCAACTGCGCCGGAACCTGCAATGATACCTGTTGCTGTGGAGCCTGATGAATCGCCAAGTCATGTGAAAGAGGATTACTTGATTAGAAAACCAGCTGCTTCTCGAGGTTTGGTTCATGCAGGGAGCAACGATGACATGATGGATGATCTTGATGAGATGATATTTGGCAAGAAAGGTGGAAGTCCATCTGAAGGAAGCCAAGATCCGAAGAAGCAGCAGACGCCAGCAAAGGATGACCTGATCAGCTTTTGA

Protein Analysis

397

Amino Acids

43.96

Weight (kDa)

4.71

Isoelectric Point (pI)

50.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VHS PF00790 48 - 179 7.4e-27 VHS domain
GAT PF03127 235 - 308 3.1e-16 GAT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 964
AccB1I GGYRCC 1 cut(s) 571
AccII CGCG 1 cut(s) 555
AciI CCGC 3 cut(s) 274, 371, 799
AclWI GGATC 2 cut(s) 883, 1136
AcoI YGGCCR 1 cut(s) 777
AcsI RAATTY 1 cut(s) 210
AcuI CTGAAG 3 cut(s) 591, 915, 1149
AcyI GRCGYC 1 cut(s) 1160
AfaI GTAC 2 cut(s) 305, 789
AfeI AGCGCT 1 cut(s) 31
AfiI CCNNNNNNNGG 1 cut(s) 1130
AflIII ACRYGT 1 cut(s) 329
AgeI ACCGGT 1 cut(s) 476
AgsI TTSAA 8 cut(s) 109, 158, 209, 251, 286, 326, 866, 874
AjnI CCWGG 1 cut(s) 547
Alw21I GWGCWC 2 cut(s) 123, 486
Alw26I GTCTC 1 cut(s) 827
AlwI GGATC 2 cut(s) 883, 1136
AlwNI CAGNNNCTG 1 cut(s) 602
Ama87I CYCGRG 1 cut(s) 1041
Aor51HI AGCGCT 1 cut(s) 31
AoxI GGCC 4 cut(s) 130, 777, 852, 926
ApeKI GCWGC 4 cut(s) 319, 368, 1034, 1153
ApoI RAATTY 1 cut(s) 210
AsiGI ACCGGT 1 cut(s) 476
Asp700I GAANNNNTTC 1 cut(s) 255
AspA2I CCTAGG 1 cut(s) 293
AspLEI GCGC 4 cut(s) 32, 45, 313, 949
AspS9I GGNCC 2 cut(s) 131, 298
AsuHPI GGTGA 5 cut(s) 124, 406, 491, 683, 735
AvaI CYCGRG 1 cut(s) 1041
AvaII GGWCC 1 cut(s) 298
AvrII CCTAGG 1 cut(s) 293
BanI GGYRCC 1 cut(s) 571
BanII GRGCYC 2 cut(s) 123, 486
Bbv12I GWGCWC 2 cut(s) 123, 486
BbvI GCAGC 4 cut(s) 306, 355, 1021, 1165
BccI CCATC 4 cut(s) 10, 385, 1072, 1132
BceAI ACGGC 1 cut(s) 792
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BciT130I CCWGG 1 cut(s) 549
BclI TGATCA 2 cut(s) 222, 1179
BcoDI GTCTC 1 cut(s) 827
BfaI CTAG 2 cut(s) 294, 621
BfoI RGCGCY 2 cut(s) 33, 46
BfuAI ACCTGC 1 cut(s) 964
BisI GCNGC 5 cut(s) 320, 369, 799, 1035, 1154
BlnI CCTAGG 1 cut(s) 293
BlsI GCNGC 5 cut(s) 321, 370, 800, 1036, 1155
Bme1390I CCNGG 1 cut(s) 549
Bme18I GGWCC 1 cut(s) 298
BmeT110I CYCGRG 1 cut(s) 1041
BmgT120I GGNCC 2 cut(s) 131, 298
BmiI GGNNCC 4 cut(s) 299, 573, 954, 981
BmrFI CCNGG 1 cut(s) 549
BmrI ACTGGG 1 cut(s) 202
BmsI GCATC 4 cut(s) 151, 438, 607, 745
BmuI ACTGGG 1 cut(s) 202
BpmI CTGGAG 1 cut(s) 861
BpuEI CTTGAG 1 cut(s) 32
BsaBI GATNNNNATC 1 cut(s) 452
BsaHI GRCGYC 1 cut(s) 1160
BsaJI CCNNGG 2 cut(s) 127, 293
BsaWI WCCGGW 3 cut(s) 476, 486, 640
Bsc4I CCNNNNNNNGG 1 cut(s) 1130
Bse118I RCCGGY 1 cut(s) 476
Bse1I ACTGG 2 cut(s) 197, 301
Bse3DI GCAATG 1 cut(s) 966
Bse8I GATNNNNATC 1 cut(s) 452
BseBI CCWGG 1 cut(s) 549
BseDI CCNNGG 2 cut(s) 127, 293
BseGI GGATG 4 cut(s) 622, 772, 1087, 1177
BseJI GATNNNNATC 1 cut(s) 452
BseLI CCNNNNNNNGG 1 cut(s) 1130
BseMI GCAATG 1 cut(s) 966
BseMII CTCAG 4 cut(s) 54, 111, 372, 428
BseNI ACTGG 2 cut(s) 197, 301
BseRI GAGGAG 1 cut(s) 727
BseXI GCAGC 4 cut(s) 306, 355, 1021, 1165
BseYI CCCAGC 1 cut(s) 630
Bsh1236I CGCG 1 cut(s) 555
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 4 cut(s) 132, 779, 854, 928
BshNI GGYRCC 1 cut(s) 571
BshTI ACCGGT 1 cut(s) 476
BsiEI CGRYCG 1 cut(s) 73
BsiHKAI GWGCWC 2 cut(s) 123, 486
BsiHKCI CYCGRG 1 cut(s) 1041
BsiSI CCGG 4 cut(s) 477, 487, 641, 950
BslI CCNNNNNNNGG 1 cut(s) 1130
BsmAI GTCTC 1 cut(s) 827
BsnI GGCC 4 cut(s) 132, 779, 854, 928
BsoBI CYCGRG 1 cut(s) 1041
Bsp1286I GDGCHC 2 cut(s) 123, 486
Bsp1407I TGTACA 1 cut(s) 787
Bsp143I GATC 9 cut(s) 51, 150, 222, 453, 527, 888, 1084, 1141, 1179
Bsp68I TCGCGA 1 cut(s) 555
BspACI CCGC 3 cut(s) 274, 371, 799
BspANI GGCC 4 cut(s) 132, 779, 854, 928
BspCNI CTCAG 4 cut(s) 55, 110, 371, 427
BspFNI CGCG 1 cut(s) 555
BspLI GGNNCC 4 cut(s) 299, 573, 954, 981
BspMI ACCTGC 1 cut(s) 964
BspPI GGATC 2 cut(s) 883, 1136
BspQI GCTCTTC 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 571
BsrDI GCAATG 1 cut(s) 966
BsrFI RCCGGY 1 cut(s) 476
BsrGI TGTACA 1 cut(s) 787
BsrI ACTGG 2 cut(s) 197, 301
BssAI RCCGGY 1 cut(s) 476
BssECI CCNNGG 2 cut(s) 127, 293
BssMI GATC 9 cut(s) 51, 150, 222, 453, 527, 888, 1084, 1141, 1179
BssNI GRCGYC 1 cut(s) 1160
BssT1I CCWWGG 2 cut(s) 127, 293
Bst2UI CCWGG 1 cut(s) 549
Bst4CI ACNGT 6 cut(s) 245, 344, 421, 710, 730, 817
Bst6I CTCTTC 2 cut(s) 128, 745
BstACI GRCGYC 1 cut(s) 1160
BstAUI TGTACA 1 cut(s) 787
BstC8I GCNNGC 2 cut(s) 41, 1164
BstDEI CTNAG 4 cut(s) 63, 97, 358, 414
BstF5I GGATG 4 cut(s) 622, 772, 1087, 1177
BstFNI CGCG 1 cut(s) 555
BstH2I RGCGCY 2 cut(s) 33, 46
BstHHI GCGC 4 cut(s) 32, 45, 313, 949
BstKTI GATC 9 cut(s) 54, 153, 225, 456, 530, 891, 1087, 1144, 1182
BstMAI GTCTC 1 cut(s) 827
BstMBI GATC 9 cut(s) 51, 150, 222, 453, 527, 888, 1084, 1141, 1179
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 5 cut(s) 36, 102, 271, 319, 1159
BstNI CCWGG 1 cut(s) 549
BstNSI RCATGY 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 547
BstUI CGCG 1 cut(s) 555
BstV1I GCAGC 4 cut(s) 306, 355, 1021, 1165
BstX2I RGATCY 2 cut(s) 888, 1141
BstYI RGATCY 2 cut(s) 888, 1141
BsuRI GGCC 4 cut(s) 132, 779, 854, 928
BtsCI GGATG 4 cut(s) 622, 772, 1087, 1177
BtsI GCAGTG 1 cut(s) 800
BtsIMutI CAGTG 5 cut(s) 60, 105, 250, 800, 813
BtuMI TCGCGA 1 cut(s) 555
BveI ACCTGC 1 cut(s) 964
Cac8I GCNNGC 2 cut(s) 41, 1164
CaiI CAGNNNCTG 1 cut(s) 602
CfoI GCGC 4 cut(s) 32, 45, 313, 949
Cfr10I RCCGGY 1 cut(s) 476
Cfr13I GGNCC 2 cut(s) 131, 298
CseI GACGC 1 cut(s) 1168
Csp6I GTAC 2 cut(s) 304, 788
CspAI ACCGGT 1 cut(s) 476
CspCI CAANNNNNGTGG 2 cut(s) 1096, 1131
CviAII CATG 6 cut(s) 220, 330, 462, 1001, 1055, 1075
CviQI GTAC 2 cut(s) 304, 788
DdeI CTNAG 4 cut(s) 63, 97, 358, 414
DpnI GATC 9 cut(s) 53, 152, 224, 455, 529, 890, 1086, 1143, 1181
DpnII GATC 9 cut(s) 51, 150, 222, 453, 527, 888, 1084, 1141, 1179
EaeI YGGCCR 1 cut(s) 777
Eam1104I CTCTTC 2 cut(s) 128, 745
EarI CTCTTC 2 cut(s) 128, 745
Ecl136II GAGCTC 2 cut(s) 121, 484
Eco130I CCWWGG 2 cut(s) 127, 293
Eco147I AGGCCT 2 cut(s) 854, 928
Eco24I GRGCYC 2 cut(s) 123, 486
Eco47I GGWCC 1 cut(s) 298
Eco47III AGCGCT 1 cut(s) 31
Eco53kI GAGCTC 2 cut(s) 121, 484
Eco57I CTGAAG 3 cut(s) 591, 915, 1149
Eco88I CYCGRG 1 cut(s) 1041
EcoICRI GAGCTC 2 cut(s) 121, 484
EcoRII CCWGG 1 cut(s) 547
EcoT14I CCWWGG 2 cut(s) 127, 293
EcoT38I GRGCYC 2 cut(s) 123, 486
ErhI CCWWGG 2 cut(s) 127, 293
FaeI CATG 6 cut(s) 223, 333, 465, 1004, 1058, 1078
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FatI CATG 6 cut(s) 219, 329, 461, 1000, 1054, 1074
FbaI TGATCA 2 cut(s) 222, 1179
Fnu4HI GCNGC 5 cut(s) 320, 369, 799, 1035, 1154
FokI GGATG 4 cut(s) 629, 779, 1094, 1184
FriOI GRGCYC 2 cut(s) 123, 486
Fsp4HI GCNGC 5 cut(s) 320, 369, 799, 1035, 1154
FspBI CTAG 2 cut(s) 294, 621
GlaI GCGC 4 cut(s) 31, 44, 312, 948
GluI GCNGC 5 cut(s) 320, 369, 799, 1035, 1154
GsaI CCCAGC 1 cut(s) 634
GsuI CTGGAG 1 cut(s) 861
HaeII RGCGCY 2 cut(s) 33, 46
HaeIII GGCC 4 cut(s) 132, 779, 854, 928
HapII CCGG 4 cut(s) 477, 487, 641, 950
HgaI GACGC 1 cut(s) 1168
HhaI GCGC 4 cut(s) 32, 45, 313, 949
Hin1I GRCGYC 1 cut(s) 1160
Hin1II CATG 6 cut(s) 223, 333, 465, 1004, 1058, 1078
Hin6I GCGC 4 cut(s) 30, 43, 311, 947
HinP1I GCGC 4 cut(s) 30, 43, 311, 947
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HindIII AAGCTT 2 cut(s) 441, 661
HinfI GANTC 8 cut(s) 202, 256, 289, 470, 611, 637, 649, 989
HpaI GTTAAC 1 cut(s) 241
HpaII CCGG 4 cut(s) 477, 487, 641, 950
HphI GGTGA 5 cut(s) 124, 406, 491, 683, 735
Hpy166II GTNNAC 2 cut(s) 241, 674
Hpy188I TCNGA 7 cut(s) 172, 361, 417, 610, 616, 1129, 1146
Hpy188III TCNNGA 7 cut(s) 49, 206, 383, 554, 820, 1041, 1088
Hpy8I GTNNAC 2 cut(s) 241, 674
HpyAV CCTTC 4 cut(s) 50, 109, 939, 1124
HpyCH4III ACNGT 6 cut(s) 245, 344, 421, 710, 730, 817
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 3 cut(s) 701, 959, 1058
HpyF10VI GCNNNNNNNGC 5 cut(s) 36, 102, 271, 319, 1159
HpyF3I CTNAG 4 cut(s) 63, 97, 358, 414
HpySE526I ACGT 1 cut(s) 281
Hsp92I GRCGYC 1 cut(s) 1160
Hsp92II CATG 6 cut(s) 223, 333, 465, 1004, 1058, 1078
HspAI GCGC 4 cut(s) 30, 43, 311, 947
Ksp22I TGATCA 2 cut(s) 222, 1179
KspAI GTTAAC 1 cut(s) 241
Kzo9I GATC 9 cut(s) 51, 150, 222, 453, 527, 888, 1084, 1141, 1179
LguI GCTCTTC 1 cut(s) 128
LmnI GCTCC 4 cut(s) 118, 489, 979, 1062
Lsp1109I GCAGC 4 cut(s) 306, 355, 1021, 1165
LweI GCATC 4 cut(s) 151, 438, 607, 745
MaeI CTAG 2 cut(s) 294, 621
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 5
MalI GATC 9 cut(s) 53, 152, 224, 455, 529, 890, 1086, 1143, 1181
MboI GATC 9 cut(s) 51, 150, 222, 453, 527, 888, 1084, 1141, 1179
MboII GAAGA 7 cut(s) 115, 170, 194, 298, 732, 926, 1159
MflI RGATCY 2 cut(s) 888, 1141
MhlI GDGCHC 2 cut(s) 123, 486
MluCI AATT 4 cut(s) 10, 210, 251, 825
MlyI GAGTC 1 cut(s) 620
MmeI TCCRAC 2 cut(s) 594, 965
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 5 cut(s) 240, 336, 426, 524, 723
MspA1I CMGCKG 2 cut(s) 839, 1034
MspI CCGG 4 cut(s) 477, 487, 641, 950
MspR9I CCNGG 1 cut(s) 549
MvaI CCWGG 1 cut(s) 549
MvnI CGCG 1 cut(s) 555
MwoI GCNNNNNNNGC 5 cut(s) 36, 102, 271, 319, 1159
NdeII GATC 9 cut(s) 51, 150, 222, 453, 527, 888, 1084, 1141, 1179
NlaIII CATG 6 cut(s) 223, 333, 465, 1004, 1058, 1078
NlaIV GGNNCC 4 cut(s) 299, 573, 954, 981
NmuCI GTSAC 1 cut(s) 5
NruI TCGCGA 1 cut(s) 555
NspI RCATGY 1 cut(s) 333
PaeR7I CTCGAG 1 cut(s) 1041
PceI AGGCCT 2 cut(s) 854, 928
PciI ACATGT 1 cut(s) 329
PciSI GCTCTTC 1 cut(s) 128
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 7 cut(s) 202, 256, 289, 470, 637, 649, 989
PinAI ACCGGT 1 cut(s) 476
PkrI GCNGC 5 cut(s) 321, 370, 800, 1036, 1155
PleI GAGTC 1 cut(s) 619
PpsI GAGTC 1 cut(s) 619
PscI ACATGT 1 cut(s) 329
Psp124BI GAGCTC 2 cut(s) 123, 486
Psp6I CCWGG 1 cut(s) 547
PspFI CCCAGC 1 cut(s) 630
PspGI CCWGG 1 cut(s) 547
PspN4I GGNNCC 4 cut(s) 299, 573, 954, 981
PspPI GGNCC 2 cut(s) 131, 298
PstNI CAGNNNCTG 1 cut(s) 602
PsuI RGATCY 2 cut(s) 888, 1141
PvuII CAGCTG 2 cut(s) 839, 1034
RruI TCGCGA 1 cut(s) 555
RsaI GTAC 2 cut(s) 305, 789
RsaNI GTAC 2 cut(s) 304, 788
SacI GAGCTC 2 cut(s) 123, 486
SapI GCTCTTC 1 cut(s) 128
SaqAI TTAA 5 cut(s) 240, 336, 426, 524, 723
SatI GCNGC 5 cut(s) 320, 369, 799, 1035, 1154
Sau3AI GATC 9 cut(s) 51, 150, 222, 453, 527, 888, 1084, 1141, 1179
Sau96I GGNCC 2 cut(s) 131, 298
SchI GAGTC 1 cut(s) 620
ScrFI CCNGG 1 cut(s) 549
SduI GDGCHC 2 cut(s) 123, 486
SfaNI GCATC 4 cut(s) 151, 438, 607, 745
Sfr274I CTCGAG 1 cut(s) 1041
SinI GGWCC 1 cut(s) 298
SlaI CTCGAG 1 cut(s) 1041
SmlI CTYRAG 2 cut(s) 47, 1041
SmoI CTYRAG 2 cut(s) 47, 1041
Sse9I AATT 4 cut(s) 10, 210, 251, 825
SseBI AGGCCT 2 cut(s) 854, 928
SsiI CCGC 3 cut(s) 274, 371, 799
SspI AATATT 1 cut(s) 579
SspMI CTAG 2 cut(s) 294, 621
SstI GAGCTC 2 cut(s) 123, 486
StuI AGGCCT 2 cut(s) 854, 928
StyD4I CCNGG 1 cut(s) 547
StyI CCWWGG 2 cut(s) 127, 293
TaaI ACNGT 6 cut(s) 245, 344, 421, 710, 730, 817
TaiI ACGT 1 cut(s) 284
TaqI TCGA 5 cut(s) 54, 73, 180, 456, 1042
TaqII GACCGA 1 cut(s) 59
TasI AATT 4 cut(s) 10, 210, 251, 825
TatI WGTACW 1 cut(s) 787
TauI GCSGC 1 cut(s) 801
TfiI GAWTC 7 cut(s) 202, 256, 289, 470, 637, 649, 989
Tru1I TTAA 5 cut(s) 240, 336, 426, 524, 723
Tru9I TTAA 5 cut(s) 240, 336, 426, 524, 723
TscAI CASTG 5 cut(s) 67, 105, 250, 800, 820
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 4 cut(s) 319, 368, 1034, 1153
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 4 cut(s) 215, 927, 1002, 1043
TspRI CASTG 5 cut(s) 67, 105, 250, 800, 820
VpaK11BI GGWCC 1 cut(s) 298
XapI RAATTY 1 cut(s) 210
XceI RCATGY 1 cut(s) 333
XhoI CTCGAG 1 cut(s) 1041
XmaJI CCTAGG 1 cut(s) 293
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 2 cut(s) 294, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.