MD01G1236800.v1.1

TOM1-like protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
32411053 .. 32414370
3318 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1236800.v1.1.491

Sequence Viewer

Length: 1191 bp
ATGAGTGACAATTTGATGGAGAAGGTGAGCGCTCTTGGTGAGCGCCTCAAGATCGAAGGGACTGAGGTCGGTCGAAAAATGAGCGCTGGATTTAGCTCAGTCAGCTTTAAGGTGAAGGAGCTCTTCCAAGGCCCAAACCAAGCAGATAAGATCGTTGAAGATGCCACATCAGAAGCACTCGAAGAACCTGACTGGGCTATGAATCTTGAAATATGTGACATGATCAATACTGAAAGAGTTAATAGTGTTGAATTGATTCGCGGATTAAAAAAGCGGATTATGTTGAAGAATCCTAGGGTCCAGTACCTTGCGCTAGTGCTGCTTGAAACATGTGTTAAGAACTGTGAAAAGGCTTTCTCTGAAATAGCAGCGGAGAGAGTTCTTGATGAGATGGTGAAGCTGATTGACGACCCTCAGACTGTTGTTAATAATCGCAATAAAGCTTTGATGCTGATCGAAGCATGGGGGGAATCGACCGGTGAGCTCCGCTATTTACCTGTTTACGAGGAAACATACAAGAGTTTAAGATCAAGGGGTATTCGGTTTCCCGGTCGCGACAATGAGAGTTTGGCACCAATATTCACTCCCCCTCGTTCAGTTTCTGCTTCGGAGTCAGATGCTAGTTTTTCCCAGCAGATTCCGGTTGAGATTGCTGCCCAAAACTTTACAGCTGAACAACCAAAGGAAGCATTTGATGTTGCAAGAAACAGTATTGAGCTACTTAATTCTGTTTTATCCTCTTCACCCCAACAAGATGCTTTACAGGATGAGTTGACGACCACACTTGTACAACAGTGCCGTCAATCTCTATCCACTGTCCAGAGAATTATAGAGACAGCTGGAGAGAACGAGGCCTTGCTGTTTGAAGCGTTGAATGTGAATGATGAGATCCATAAAGCTCTATCCAAGTATGAAGAACTGATCAGGCCTTCAGTTGTTCCAACTGCGCCAGAACCTGCAATGATACCCGTAGCTGTGGAGCCTGATGAATCACCAAGTCATGCGAAAGAGGATTCCTTGATTAGAAGACCAGCTGCTTCTCGAGGTTTGGTTCATGCAGGGAGCAACGATGACATGATGGATGATCTTGATGAGATGATATTTGGCAAGAAAGGTGGAAGTTCATCTGAAGGAAGCCAAGATCCGAAGAAGCAGCAGACGCCAGCAAAGGATGACCTTATCAGCTTTTGA

Protein Analysis

397

Amino Acids

43.88

Weight (kDa)

4.71

Isoelectric Point (pI)

52.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VHS PF00790 48 - 179 9e-27 VHS domain
GAT PF03127 235 - 308 6.1e-18 GAT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 964
AccB1I GGYRCC 1 cut(s) 571
AccII CGCG 2 cut(s) 261, 555
AciI CCGC 4 cut(s) 261, 274, 371, 487
AclWI GGATC 2 cut(s) 883, 1136
AcuI CTGAAG 2 cut(s) 915, 1149
AcyI GRCGYC 1 cut(s) 1160
AfaI GTAC 2 cut(s) 305, 789
AfeI AGCGCT 2 cut(s) 31, 85
AflIII ACRYGT 1 cut(s) 329
AgeI ACCGGT 1 cut(s) 476
AgsI TTSAA 7 cut(s) 158, 209, 251, 286, 326, 866, 874
Alw21I GWGCWC 2 cut(s) 123, 486
Alw26I GTCTC 1 cut(s) 827
AlwI GGATC 2 cut(s) 883, 1136
AlwNI CAGNNNCTG 2 cut(s) 602, 956
Ama87I CYCGRG 1 cut(s) 1041
Aor51HI AGCGCT 2 cut(s) 31, 85
AoxI GGCC 3 cut(s) 130, 852, 926
ApeKI GCWGC 5 cut(s) 319, 368, 653, 1034, 1153
AsiGI ACCGGT 1 cut(s) 476
Asp700I GAANNNNTTC 1 cut(s) 255
AspA2I CCTAGG 1 cut(s) 293
AspLEI GCGC 5 cut(s) 32, 45, 86, 313, 949
AspS9I GGNCC 2 cut(s) 131, 298
AsuC2I CCSGG 1 cut(s) 549
AsuHPI GGTGA 7 cut(s) 37, 50, 124, 406, 491, 735, 984
AvaI CYCGRG 1 cut(s) 1041
AvaII GGWCC 1 cut(s) 298
AvrII CCTAGG 1 cut(s) 293
BanI GGYRCC 1 cut(s) 571
BanII GRGCYC 2 cut(s) 123, 486
BbsI GAAGAC 1 cut(s) 1033
Bbv12I GWGCWC 2 cut(s) 123, 486
BbvI GCAGC 5 cut(s) 306, 380, 640, 1021, 1165
BccI CCATC 3 cut(s) 10, 385, 1072
BceAI ACGGC 1 cut(s) 783
BclI TGATCA 2 cut(s) 222, 921
BcnI CCSGG 1 cut(s) 549
BcoDI GTCTC 1 cut(s) 827
BfaI CTAG 3 cut(s) 294, 314, 621
BfoI RGCGCY 3 cut(s) 33, 46, 87
BfuAI ACCTGC 1 cut(s) 964
BisI GCNGC 5 cut(s) 320, 369, 654, 1035, 1154
BlnI CCTAGG 1 cut(s) 293
BlsI GCNGC 5 cut(s) 321, 370, 655, 1036, 1155
Bme1390I CCNGG 1 cut(s) 549
Bme18I GGWCC 1 cut(s) 298
BmeT110I CYCGRG 1 cut(s) 1041
BmgT120I GGNCC 2 cut(s) 131, 298
BmiI GGNNCC 3 cut(s) 299, 573, 981
BmrFI CCNGG 1 cut(s) 549
BmrI ACTGGG 1 cut(s) 202
BmsI GCATC 4 cut(s) 151, 438, 607, 745
BmuI ACTGGG 1 cut(s) 202
BoxI GACNNNNGTC 1 cut(s) 65
BpiI GAAGAC 1 cut(s) 1033
BpmI CTGGAG 1 cut(s) 861
BpuEI CTTGAG 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 549
BsaBI GATNNNNATC 1 cut(s) 452
BsaHI GRCGYC 1 cut(s) 1160
BsaJI CCNNGG 2 cut(s) 127, 293
BsaWI WCCGGW 2 cut(s) 476, 640
Bse118I RCCGGY 1 cut(s) 476
Bse1I ACTGG 2 cut(s) 197, 301
Bse3DI GCAATG 1 cut(s) 966
Bse8I GATNNNNATC 1 cut(s) 452
BseDI CCNNGG 2 cut(s) 127, 293
BseGI GGATG 3 cut(s) 772, 1087, 1177
BseJI GATNNNNATC 1 cut(s) 452
BseMI GCAATG 1 cut(s) 966
BseMII CTCAG 3 cut(s) 54, 111, 428
BseNI ACTGG 2 cut(s) 197, 301
BseXI GCAGC 5 cut(s) 306, 380, 640, 1021, 1165
BseYI CCCAGC 1 cut(s) 630
Bsh1236I CGCG 2 cut(s) 261, 555
Bsh1285I CGRYCG 3 cut(s) 73, 477, 553
BshFI GGCC 3 cut(s) 132, 854, 928
BshNI GGYRCC 1 cut(s) 571
BshTI ACCGGT 1 cut(s) 476
BsiEI CGRYCG 3 cut(s) 73, 477, 553
BsiHKAI GWGCWC 2 cut(s) 123, 486
BsiHKCI CYCGRG 1 cut(s) 1041
BsiSI CCGG 3 cut(s) 477, 549, 641
BslFI GGGAC 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 827
BsmFI GGGAC 1 cut(s) 73
BsnI GGCC 3 cut(s) 132, 854, 928
BsoBI CYCGRG 1 cut(s) 1041
Bsp1286I GDGCHC 2 cut(s) 123, 486
Bsp1407I TGTACA 1 cut(s) 787
Bsp143I GATC 9 cut(s) 51, 150, 222, 453, 527, 888, 921, 1084, 1141
Bsp68I TCGCGA 1 cut(s) 555
BspACI CCGC 4 cut(s) 261, 274, 371, 487
BspANI GGCC 3 cut(s) 132, 854, 928
BspCNI CTCAG 3 cut(s) 55, 110, 427
BspFNI CGCG 2 cut(s) 261, 555
BspLI GGNNCC 3 cut(s) 299, 573, 981
BspMI ACCTGC 1 cut(s) 964
BspPI GGATC 2 cut(s) 883, 1136
BspQI GCTCTTC 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 571
BsrDI GCAATG 1 cut(s) 966
BsrFI RCCGGY 1 cut(s) 476
BsrGI TGTACA 1 cut(s) 787
BsrI ACTGG 2 cut(s) 197, 301
BssAI RCCGGY 1 cut(s) 476
BssECI CCNNGG 2 cut(s) 127, 293
BssMI GATC 9 cut(s) 51, 150, 222, 453, 527, 888, 921, 1084, 1141
BssNI GRCGYC 1 cut(s) 1160
BssT1I CCWWGG 2 cut(s) 127, 293
Bst4CI ACNGT 5 cut(s) 344, 421, 710, 795, 817
Bst6I CTCTTC 2 cut(s) 128, 745
BstACI GRCGYC 1 cut(s) 1160
BstAUI TGTACA 1 cut(s) 787
BstC8I GCNNGC 1 cut(s) 1164
BstDEI CTNAG 3 cut(s) 63, 97, 414
BstF5I GGATG 3 cut(s) 772, 1087, 1177
BstFNI CGCG 2 cut(s) 261, 555
BstH2I RGCGCY 3 cut(s) 33, 46, 87
BstHHI GCGC 5 cut(s) 32, 45, 86, 313, 949
BstKTI GATC 9 cut(s) 54, 153, 225, 456, 530, 891, 924, 1087, 1144
BstMAI GTCTC 1 cut(s) 827
BstMBI GATC 9 cut(s) 51, 150, 222, 453, 527, 888, 921, 1084, 1141
BstMCI CGRYCG 3 cut(s) 73, 477, 553
BstMWI GCNNNNNNNGC 3 cut(s) 102, 319, 1159
BstNSI RCATGY 1 cut(s) 333
BstPAI GACNNNNGTC 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 547
BstUI CGCG 2 cut(s) 261, 555
BstV1I GCAGC 5 cut(s) 306, 380, 640, 1021, 1165
BstV2I GAAGAC 1 cut(s) 1033
BstX2I RGATCY 2 cut(s) 888, 1141
BstYI RGATCY 2 cut(s) 888, 1141
BsuRI GGCC 3 cut(s) 132, 854, 928
BtsCI GGATG 3 cut(s) 772, 1087, 1177
BtsIMutI CAGTG 2 cut(s) 800, 813
BtuMI TCGCGA 1 cut(s) 555
BveI ACCTGC 1 cut(s) 964
Cac8I GCNNGC 1 cut(s) 1164
CaiI CAGNNNCTG 2 cut(s) 602, 956
CfoI GCGC 5 cut(s) 32, 45, 86, 313, 949
Cfr10I RCCGGY 1 cut(s) 476
Cfr13I GGNCC 2 cut(s) 131, 298
CseI GACGC 1 cut(s) 1168
Csp6I GTAC 2 cut(s) 304, 788
CspAI ACCGGT 1 cut(s) 476
CspCI CAANNNNNGTGG 2 cut(s) 1096, 1131
CviAII CATG 6 cut(s) 220, 330, 462, 1001, 1055, 1075
CviQI GTAC 2 cut(s) 304, 788
DdeI CTNAG 3 cut(s) 63, 97, 414
DpnI GATC 9 cut(s) 53, 152, 224, 455, 529, 890, 923, 1086, 1143
DpnII GATC 9 cut(s) 51, 150, 222, 453, 527, 888, 921, 1084, 1141
Eam1104I CTCTTC 2 cut(s) 128, 745
EarI CTCTTC 2 cut(s) 128, 745
Ecl136II GAGCTC 2 cut(s) 121, 484
Eco130I CCWWGG 2 cut(s) 127, 293
Eco147I AGGCCT 2 cut(s) 854, 928
Eco24I GRGCYC 2 cut(s) 123, 486
Eco47I GGWCC 1 cut(s) 298
Eco47III AGCGCT 2 cut(s) 31, 85
Eco53kI GAGCTC 2 cut(s) 121, 484
Eco57I CTGAAG 2 cut(s) 915, 1149
Eco88I CYCGRG 1 cut(s) 1041
EcoICRI GAGCTC 2 cut(s) 121, 484
EcoT14I CCWWGG 2 cut(s) 127, 293
EcoT38I GRGCYC 2 cut(s) 123, 486
ErhI CCWWGG 2 cut(s) 127, 293
FaeI CATG 6 cut(s) 223, 333, 465, 1004, 1058, 1078
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FaqI GGGAC 1 cut(s) 73
FatI CATG 6 cut(s) 219, 329, 461, 1000, 1054, 1074
FbaI TGATCA 2 cut(s) 222, 921
Fnu4HI GCNGC 5 cut(s) 320, 369, 654, 1035, 1154
FokI GGATG 3 cut(s) 779, 1094, 1184
FriOI GRGCYC 2 cut(s) 123, 486
Fsp4HI GCNGC 5 cut(s) 320, 369, 654, 1035, 1154
FspBI CTAG 3 cut(s) 294, 314, 621
GlaI GCGC 5 cut(s) 31, 44, 85, 312, 948
GluI GCNGC 5 cut(s) 320, 369, 654, 1035, 1154
GsaI CCCAGC 1 cut(s) 634
GsuI CTGGAG 1 cut(s) 861
HaeII RGCGCY 3 cut(s) 33, 46, 87
HaeIII GGCC 3 cut(s) 132, 854, 928
HapII CCGG 3 cut(s) 477, 549, 641
HgaI GACGC 1 cut(s) 1168
HhaI GCGC 5 cut(s) 32, 45, 86, 313, 949
Hin1I GRCGYC 1 cut(s) 1160
Hin1II CATG 6 cut(s) 223, 333, 465, 1004, 1058, 1078
Hin6I GCGC 5 cut(s) 30, 43, 84, 311, 947
HinP1I GCGC 5 cut(s) 30, 43, 84, 311, 947
HincII GTYRAC 1 cut(s) 774
HindII GTYRAC 1 cut(s) 774
HindIII AAGCTT 1 cut(s) 441
HinfI GANTC 8 cut(s) 202, 256, 289, 470, 611, 637, 989, 1013
HpaII CCGG 3 cut(s) 477, 549, 641
HphI GGTGA 7 cut(s) 37, 50, 124, 406, 491, 735, 984
Hpy166II GTNNAC 2 cut(s) 502, 774
Hpy188I TCNGA 7 cut(s) 172, 361, 417, 610, 616, 1129, 1146
Hpy188III TCNNGA 7 cut(s) 49, 206, 383, 554, 820, 1041, 1088
Hpy8I GTNNAC 2 cut(s) 502, 774
HpyAV CCTTC 5 cut(s) 16, 50, 109, 939, 1124
HpyCH4III ACNGT 5 cut(s) 344, 421, 710, 795, 817
HpyCH4V TGCA 3 cut(s) 701, 959, 1058
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 319, 1159
HpyF3I CTNAG 3 cut(s) 63, 97, 414
Hsp92I GRCGYC 1 cut(s) 1160
Hsp92II CATG 6 cut(s) 223, 333, 465, 1004, 1058, 1078
HspAI GCGC 5 cut(s) 30, 43, 84, 311, 947
Ksp22I TGATCA 2 cut(s) 222, 921
Kzo9I GATC 9 cut(s) 51, 150, 222, 453, 527, 888, 921, 1084, 1141
LguI GCTCTTC 1 cut(s) 128
LmnI GCTCC 4 cut(s) 118, 489, 979, 1062
Lsp1109I GCAGC 5 cut(s) 306, 380, 640, 1021, 1165
LweI GCATC 4 cut(s) 151, 438, 607, 745
MaeI CTAG 3 cut(s) 294, 314, 621
MaeIII GTNAC 2 cut(s) 5, 215
MalI GATC 9 cut(s) 53, 152, 224, 455, 529, 890, 923, 1086, 1143
MboI GATC 9 cut(s) 51, 150, 222, 453, 527, 888, 921, 1084, 1141
MboII GAAGA 8 cut(s) 115, 170, 194, 298, 732, 926, 1038, 1159
MflI RGATCY 2 cut(s) 888, 1141
MhlI GDGCHC 2 cut(s) 123, 486
MluCI AATT 4 cut(s) 10, 251, 724, 825
MlyI GAGTC 1 cut(s) 620
MmeI TCCRAC 1 cut(s) 965
MnlI CCTC 9 cut(s) 56, 58, 423, 499, 600, 748, 844, 1003, 1037
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 7 cut(s) 108, 240, 266, 336, 426, 524, 723
MspA1I CMGCKG 4 cut(s) 371, 671, 839, 1034
MspI CCGG 3 cut(s) 477, 549, 641
MspR9I CCNGG 1 cut(s) 549
MvnI CGCG 2 cut(s) 261, 555
MwoI GCNNNNNNNGC 3 cut(s) 102, 319, 1159
NciI CCSGG 1 cut(s) 549
NdeII GATC 9 cut(s) 51, 150, 222, 453, 527, 888, 921, 1084, 1141
NlaIII CATG 6 cut(s) 223, 333, 465, 1004, 1058, 1078
NlaIV GGNNCC 3 cut(s) 299, 573, 981
NmuCI GTSAC 2 cut(s) 5, 215
NruI TCGCGA 1 cut(s) 555
NspI RCATGY 1 cut(s) 333
PaeR7I CTCGAG 1 cut(s) 1041
PceI AGGCCT 2 cut(s) 854, 928
PciI ACATGT 1 cut(s) 329
PciSI GCTCTTC 1 cut(s) 128
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 7 cut(s) 202, 256, 289, 470, 637, 989, 1013
PinAI ACCGGT 1 cut(s) 476
PkrI GCNGC 5 cut(s) 321, 370, 655, 1036, 1155
PleI GAGTC 1 cut(s) 619
PpsI GAGTC 1 cut(s) 619
PscI ACATGT 1 cut(s) 329
PshAI GACNNNNGTC 1 cut(s) 65
Psp124BI GAGCTC 2 cut(s) 123, 486
PspFI CCCAGC 1 cut(s) 630
PspN4I GGNNCC 3 cut(s) 299, 573, 981
PspPI GGNCC 2 cut(s) 131, 298
PstNI CAGNNNCTG 2 cut(s) 602, 956
PsuI RGATCY 2 cut(s) 888, 1141
PvuII CAGCTG 3 cut(s) 671, 839, 1034
RruI TCGCGA 1 cut(s) 555
RsaI GTAC 2 cut(s) 305, 789
RsaNI GTAC 2 cut(s) 304, 788
SacI GAGCTC 2 cut(s) 123, 486
SapI GCTCTTC 1 cut(s) 128
SaqAI TTAA 7 cut(s) 108, 240, 266, 336, 426, 524, 723
SatI GCNGC 5 cut(s) 320, 369, 654, 1035, 1154
Sau3AI GATC 9 cut(s) 51, 150, 222, 453, 527, 888, 921, 1084, 1141
Sau96I GGNCC 2 cut(s) 131, 298
SchI GAGTC 1 cut(s) 620
ScrFI CCNGG 1 cut(s) 549
SduI GDGCHC 2 cut(s) 123, 486
SfaNI GCATC 4 cut(s) 151, 438, 607, 745
Sfr274I CTCGAG 1 cut(s) 1041
SinI GGWCC 1 cut(s) 298
SlaI CTCGAG 1 cut(s) 1041
SmlI CTYRAG 2 cut(s) 47, 1041
SmoI CTYRAG 2 cut(s) 47, 1041
Sse9I AATT 4 cut(s) 10, 251, 724, 825
SseBI AGGCCT 2 cut(s) 854, 928
SsiI CCGC 4 cut(s) 261, 274, 371, 487
SspI AATATT 1 cut(s) 579
SspMI CTAG 3 cut(s) 294, 314, 621
SstI GAGCTC 2 cut(s) 123, 486
StuI AGGCCT 2 cut(s) 854, 928
StyD4I CCNGG 1 cut(s) 547
StyI CCWWGG 2 cut(s) 127, 293
TaaI ACNGT 5 cut(s) 344, 421, 710, 795, 817
TaqI TCGA 6 cut(s) 54, 73, 180, 456, 473, 1042
TaqII GACCGA 1 cut(s) 59
TasI AATT 4 cut(s) 10, 251, 724, 825
TatI WGTACW 1 cut(s) 787
TfiI GAWTC 7 cut(s) 202, 256, 289, 470, 637, 989, 1013
Tru1I TTAA 7 cut(s) 108, 240, 266, 336, 426, 524, 723
Tru9I TTAA 7 cut(s) 108, 240, 266, 336, 426, 524, 723
TscAI CASTG 2 cut(s) 800, 820
TseFI GTSAC 2 cut(s) 5, 215
TseI GCWGC 5 cut(s) 319, 368, 653, 1034, 1153
Tsp45I GTSAC 2 cut(s) 5, 215
TspDTI ATGAA 5 cut(s) 215, 927, 1002, 1043, 1113
TspRI CASTG 2 cut(s) 800, 820
VpaK11BI GGWCC 1 cut(s) 298
XceI RCATGY 1 cut(s) 333
XhoI CTCGAG 1 cut(s) 1041
XmaJI CCTAGG 1 cut(s) 293
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 3 cut(s) 294, 314, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.