Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006590

Physical Location & Seq

Genomic Coordinates Reverse (-)

24065956 .. 24069064

Gene Structure 3109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g34030.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGAGTGATAATTTGATGGAGAAAGTAAGTGCTTTTGGTGAACGCCTCAAGATTGAAGGTAGTGAAGTAGGTCGGAAGATGAGTGCCAGCTTGAGCTCAGTGAGCTTCAAGGTGAAGGAGCTTTTCCAAGGTCCAAACCAAGGAGATAAGATCGTTGAAGAGGCCACCTCAGAGGCACTTGATGAACCTGACTGGGCGTTGAATCTTGAGATTTGTGACATGATCAATACTGAAAGAGTTAACAGTGTTGAATTGATCCGTGGAATTAAAAAGCGGATTATGTTGAAGAATCCCAGGGTTCAGTATCTCTCTTTGGTACTGCTTGAAACAGTTGTTAAAAATTGTGAGAAGGCTTTCTCAGAGATAGCAGCTGAGAGAGTTCTTGATGAGATGGTGAAACTGATTGATGACCCTCAGACTGTTGTTAATAATCGCAACAAGGCTTTGGTGCTAATTGAAGCATGGGGCGAATCAACTGGGGAGCTCCGCTATCTGCCTGTTTATGAGGAAACATACAAGAGTTTAAGATCAAGGGGTATTCGGTTCCCTGGTCGTGACAATGAGAGTTTGGCACCTATTTTCACTCCCCCTCGTTCAGTTTCAGCTTCAGAGTTAGATGCTAGTCTCTCGCAGCAGATTCCAGTTGATATTCCAGTGCAAAGCTTTACCCCTGAACAATCAAAGGAAGCATTTGACGTTGCAAAAAACAGTATTGAGCTTCTTAGTACTGTTCTTTCTTCCTCACCCCAACAAGATGCTCTACAGGATGACCTGACAACCACACTAGTGTACCAATGCCGTCAGTCTCAAGCAACTGTGCAGAGAATTATAGAGTCAGCTGGAGAGAATGAGGCCCTACTGTTTGAAGCGTTAAACGTGAATGATGAGATCCATAAAGCTCTATCTAAGTATGAAGAAATGACAAAGCCTTCTGTTGCTCACCAGCAGCCAGAACCTGCAATGATACCTGTTGCTGTGGAGCCTGACGAATCACCCATTCACGGCAAAGAGGATTCCTTGATCAGAAAACCAGCCGCCTCTCGAGGTGCCCATGGAGGGATCAACGACGACATGATGGATGATCTGGATGAGATGATATTTGGCAAGAAAGGCGGGAGTTCAACGGAAGGAGGCCAAGATCCAAAGAAACAGCAGCCACCGTCAAAGGATGACCTGATCAGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007088 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030276 GO:0033043 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0045839 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

396

Amino Acids

43.75

Weight (kDa)

4.73

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VHS	PF00790	49 - 179	1.8e-25	VHS domain
GAT	PF03127	235 - 309	7.6e-18	GAT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16880 AT5G16880 AT5G16880 AT5G16880
fragaria_vesca	FvH4_7g34030 FvH4_7g34030 FvH4_7g34030 FvH4_7g34030 FvH4_7g34030 FvH4_7g34030
malus_domestica	MD01G1236800.v1.1 MD07G1309400.v1.1
prunus_persica	Prupe.2G326800_v2.0.a1
pyrus_communis	pycom01g24450 pycom07g28140
rosa_chinensis	RchiOBHm_Chr1g0384291
rosa_laevigata	RLG00000026051
rosa_multiflora	Rmu_co8343069.1_g000001 Rmu_sc0016737.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276790
rosa_rugosa	Rorug01G0446500
rosa_samantha	Rh1AG472100 Rh1BG429700 Rh1CG442300 Rh1DG462400
rosa_wichuraiana	Rw1G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	964
AccB1I	GGYRCC	2 cut(s)	571, 1046
AciI	CCGC	4 cut(s)	274, 487, 1035, 1113
AclWI	GGATC	4 cut(s)	250, 883, 1067, 1133
AcuI	CTGAAG	1 cut(s)	591
AfaI	GTAC	3 cut(s)	318, 727, 791
AfiI	CCNNNNNNNGG	3 cut(s)	140, 1001, 1056
AhlI	ACTAGT	1 cut(s)	784
AjnI	CCWGG	2 cut(s)	293, 547
AleI	CACNNNNGTG	1 cut(s)	785
Alw21I	GWGCWC	2 cut(s)	98, 486
Alw26I	GTCTC	2 cut(s)	629, 810
AlwI	GGATC	4 cut(s)	250, 883, 1067, 1133
AlwNI	CAGNNNCTG	2 cut(s)	956, 1185
Ama87I	CYCGRG	1 cut(s)	1041
AoxI	GGCC	3 cut(s)	162, 852, 1132
ApeKI	GCWGC	4 cut(s)	368, 631, 946, 1153
Asp700I	GAANNNNTTC	1 cut(s)	353
AspS9I	GGNCC	2 cut(s)	131, 853
AsuHPI	GGTGA	6 cut(s)	50, 124, 406, 735, 932, 984
AvaI	CYCGRG	1 cut(s)	1041
AvaII	GGWCC	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	1051
BaeI	ACNNNNGTAYC	2 cut(s)	773, 806
BanI	GGYRCC	2 cut(s)	571, 1046
BanII	GRGCYC	2 cut(s)	98, 486
Bbv12I	GWGCWC	2 cut(s)	98, 486
BbvI	GCAGC	4 cut(s)	380, 643, 958, 1165
BccI	CCATC	3 cut(s)	10, 385, 1069
BceAI	ACGGC	2 cut(s)	783, 1018
BciT130I	CCWGG	2 cut(s)	295, 549
BclI	TGATCA	3 cut(s)	222, 1020, 1176
BcoDI	GTCTC	2 cut(s)	629, 810
BcuI	ACTAGT	1 cut(s)	784
BfaI	CTAG	2 cut(s)	621, 785
BfmI	CTRYAG	1 cut(s)	761
BfuAI	ACCTGC	1 cut(s)	964
BisI	GCNGC	5 cut(s)	369, 632, 947, 1035, 1154
BlsI	GCNGC	5 cut(s)	370, 633, 948, 1036, 1155
BmcAI	AGTACT	1 cut(s)	727
Bme1390I	CCNGG	2 cut(s)	295, 549
Bme18I	GGWCC	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	1041
BmgT120I	GGNCC	2 cut(s)	131, 853
BmiI	GGNNCC	4 cut(s)	545, 573, 981, 1048
BmrFI	CCNGG	2 cut(s)	295, 549
BmrI	ACTGGG	2 cut(s)	202, 486
BmsI	GCATC	2 cut(s)	607, 745
BmuI	ACTGGG	2 cut(s)	202, 486
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BpmI	CTGGAG	1 cut(s)	861
BpuEI	CTTGAG	4 cut(s)	32, 112, 227, 792
BsaJI	CCNNGG	7 cut(s)	127, 139, 259, 293, 294, 547, 1051
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 1001, 1056
Bse1I	ACTGG	4 cut(s)	197, 481, 641, 653
Bse3DI	GCAATG	1 cut(s)	966
BseBI	CCWGG	2 cut(s)	295, 549
BseDI	CCNNGG	7 cut(s)	127, 139, 259, 293, 294, 547, 1051
BseGI	GGATG	4 cut(s)	772, 1084, 1093, 1174
BseLI	CCNNNNNNNGG	3 cut(s)	140, 1001, 1056
BseMI	GCAATG	1 cut(s)	966
BseMII	CTCAG	5 cut(s)	111, 183, 363, 372, 428
BseNI	ACTGG	4 cut(s)	197, 481, 641, 653
BseSI	GKGCMC	1 cut(s)	1051
BseXI	GCAGC	4 cut(s)	380, 643, 958, 1165
BsgI	GTGCAG	1 cut(s)	839
BshFI	GGCC	3 cut(s)	164, 854, 1134
BshNI	GGYRCC	2 cut(s)	571, 1046
BsiHKAI	GWGCWC	2 cut(s)	98, 486
BsiHKCI	CYCGRG	1 cut(s)	1041
BslI	CCNNNNNNNGG	3 cut(s)	140, 1001, 1056
BsmAI	GTCTC	2 cut(s)	629, 810
BsnI	GGCC	3 cut(s)	164, 854, 1134
BsoBI	CYCGRG	1 cut(s)	1041
Bsp1286I	GDGCHC	3 cut(s)	98, 486, 1051
Bsp19I	CCATGG	1 cut(s)	1051
BspACI	CCGC	4 cut(s)	274, 487, 1035, 1113
BspANI	GGCC	3 cut(s)	164, 854, 1134
BspCNI	CTCAG	5 cut(s)	110, 182, 364, 371, 427
BspLI	GGNNCC	4 cut(s)	545, 573, 981, 1048
BspMI	ACCTGC	1 cut(s)	964
BspPI	GGATC	4 cut(s)	250, 883, 1067, 1133
BspT107I	GGYRCC	2 cut(s)	571, 1046
BsrDI	GCAATG	1 cut(s)	966
BsrI	ACTGG	4 cut(s)	197, 481, 641, 653
BssECI	CCNNGG	7 cut(s)	127, 139, 259, 293, 294, 547, 1051
BssT1I	CCWWGG	3 cut(s)	127, 139, 1051
Bst2UI	CCWGG	2 cut(s)	295, 549
Bst4CI	ACNGT	8 cut(s)	245, 331, 421, 710, 730, 817, 861, 1161
Bst6I	CTCTTC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	7 cut(s)	97, 169, 358, 372, 414, 722, 906
BstDSI	CCRYGG	2 cut(s)	259, 1051
BstF5I	GGATG	4 cut(s)	772, 1084, 1093, 1174
BstMAI	GTCTC	2 cut(s)	629, 810
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 1110
BstNI	CCWGG	2 cut(s)	295, 549
BstSCI	CCNGG	2 cut(s)	293, 547
BstSFI	CTRYAG	1 cut(s)	761
BstSLI	GKGCMC	1 cut(s)	1051
BstV1I	GCAGC	4 cut(s)	380, 643, 958, 1165
BstX2I	RGATCY	2 cut(s)	888, 1138
BstYI	RGATCY	2 cut(s)	888, 1138
BsuRI	GGCC	3 cut(s)	164, 854, 1134
BtgI	CCRYGG	2 cut(s)	259, 1051
BtsCI	GGATG	4 cut(s)	772, 1084, 1093, 1174
BtsIMutI	CAGTG	3 cut(s)	105, 250, 660
BveI	ACCTGC	1 cut(s)	964
Cac8I	GCNNGC	1 cut(s)	88
CaiI	CAGNNNCTG	2 cut(s)	956, 1185
Cfr13I	GGNCC	2 cut(s)	131, 853
Csp6I	GTAC	3 cut(s)	317, 726, 790
CviAII	CATG	4 cut(s)	220, 462, 1052, 1072
CviQI	GTAC	3 cut(s)	317, 726, 790
DdeI	CTNAG	7 cut(s)	97, 169, 358, 372, 414, 722, 906
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Ecl136II	GAGCTC	2 cut(s)	96, 484
Eco130I	CCWWGG	3 cut(s)	127, 139, 1051
Eco24I	GRGCYC	2 cut(s)	98, 486
Eco47I	GGWCC	1 cut(s)	131
Eco53kI	GAGCTC	2 cut(s)	96, 484
Eco57I	CTGAAG	1 cut(s)	591
Eco88I	CYCGRG	1 cut(s)	1041
EcoICRI	GAGCTC	2 cut(s)	96, 484
EcoO109I	RGGNCCY	1 cut(s)	853
EcoRII	CCWGG	2 cut(s)	293, 547
EcoT14I	CCWWGG	3 cut(s)	127, 139, 1051
EcoT38I	GRGCYC	2 cut(s)	98, 486
ErhI	CCWWGG	3 cut(s)	127, 139, 1051
FaeI	CATG	4 cut(s)	223, 465, 1055, 1075
FatI	CATG	4 cut(s)	219, 461, 1051, 1071
FauI	CCCGC	1 cut(s)	1106
FbaI	TGATCA	3 cut(s)	222, 1020, 1176
Fnu4HI	GCNGC	5 cut(s)	369, 632, 947, 1035, 1154
FokI	GGATG	4 cut(s)	779, 1091, 1100, 1181
FriOI	GRGCYC	2 cut(s)	98, 486
Fsp4HI	GCNGC	5 cut(s)	369, 632, 947, 1035, 1154
FspBI	CTAG	2 cut(s)	621, 785
GluI	GCNGC	5 cut(s)	369, 632, 947, 1035, 1154
GsuI	CTGGAG	1 cut(s)	861
HaeIII	GGCC	3 cut(s)	164, 854, 1134
Hin1II	CATG	4 cut(s)	223, 465, 1055, 1075
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	661
HinfI	GANTC	7 cut(s)	202, 289, 470, 637, 833, 989, 1013
HpaI	GTTAAC	1 cut(s)	241
HphI	GGTGA	6 cut(s)	50, 124, 406, 735, 932, 984
Hpy166II	GTNNAC	3 cut(s)	41, 241, 790
Hpy188I	TCNGA	7 cut(s)	75, 172, 361, 417, 610, 1025, 1187
Hpy188III	TCNNGA	6 cut(s)	49, 206, 383, 554, 1041, 1085
Hpy8I	GTNNAC	3 cut(s)	41, 241, 790
Hpy99I	CGWCG	1 cut(s)	1070
HpyAV	CCTTC	5 cut(s)	50, 109, 343, 939, 1121
HpyCH4III	ACNGT	8 cut(s)	245, 331, 421, 710, 730, 817, 861, 1161
HpyCH4IV	ACGT	2 cut(s)	696, 876
HpyCH4V	TGCA	4 cut(s)	658, 701, 820, 959
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 1110
HpyF3I	CTNAG	7 cut(s)	97, 169, 358, 372, 414, 722, 906
HpySE526I	ACGT	2 cut(s)	696, 876
Hsp92II	CATG	4 cut(s)	223, 465, 1055, 1075
Ksp22I	TGATCA	3 cut(s)	222, 1020, 1176
KspAI	GTTAAC	1 cut(s)	241
LmnI	GCTCC	4 cut(s)	118, 481, 489, 979
Lsp1109I	GCAGC	4 cut(s)	380, 643, 958, 1165
LweI	GCATC	2 cut(s)	607, 745
MaeI	CTAG	2 cut(s)	621, 785
MaeII	ACGT	2 cut(s)	696, 876
MaeIII	GTNAC	2 cut(s)	215, 554
MboII	GAAGA	5 cut(s)	88, 170, 298, 729, 926
MflI	RGATCY	2 cut(s)	888, 1138
MhlI	GDGCHC	3 cut(s)	98, 486, 1051
MluCI	AATT	6 cut(s)	10, 251, 264, 340, 453, 825
MlyI	GAGTC	1 cut(s)	842
MmeI	TCCRAC	1 cut(s)	53
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	6 cut(s)	240, 267, 336, 426, 524, 872
MslI	CAYNNNNRTG	1 cut(s)	785
MspA1I	CMGCKG	2 cut(s)	371, 839
MspR9I	CCNGG	2 cut(s)	295, 549
MvaI	CCWGG	2 cut(s)	295, 549
MwoI	GCNNNNNNNGC	2 cut(s)	102, 1110
NcoI	CCATGG	1 cut(s)	1051
NlaIII	CATG	4 cut(s)	223, 465, 1055, 1075
NlaIV	GGNNCC	4 cut(s)	545, 573, 981, 1048
NmuCI	GTSAC	2 cut(s)	215, 554
OliI	CACNNNNGTG	1 cut(s)	785
PaeR7I	CTCGAG	1 cut(s)	1041
PasI	CCCWGGG	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	6 cut(s)	202, 289, 470, 637, 989, 1013
PkrI	GCNGC	5 cut(s)	370, 633, 948, 1036, 1155
PleI	GAGTC	1 cut(s)	841
PpsI	GAGTC	1 cut(s)	841
Psp124BI	GAGCTC	2 cut(s)	98, 486
Psp6I	CCWGG	2 cut(s)	293, 547
PspGI	CCWGG	2 cut(s)	293, 547
PspN4I	GGNNCC	4 cut(s)	545, 573, 981, 1048
PspPI	GGNCC	2 cut(s)	131, 853
PstNI	CAGNNNCTG	2 cut(s)	956, 1185
PsuI	RGATCY	2 cut(s)	888, 1138
PvuII	CAGCTG	2 cut(s)	371, 839
RsaI	GTAC	3 cut(s)	318, 727, 791
RsaNI	GTAC	3 cut(s)	317, 726, 790
RseI	CAYNNNNRTG	1 cut(s)	785
SacI	GAGCTC	2 cut(s)	98, 486
SaqAI	TTAA	6 cut(s)	240, 267, 336, 426, 524, 872
SatI	GCNGC	5 cut(s)	369, 632, 947, 1035, 1154
Sau96I	GGNCC	2 cut(s)	131, 853
ScaI	AGTACT	1 cut(s)	727
SchI	GAGTC	1 cut(s)	842
ScrFI	CCNGG	2 cut(s)	295, 549
SduI	GDGCHC	3 cut(s)	98, 486, 1051
SfaNI	GCATC	2 cut(s)	607, 745
SfcI	CTRYAG	1 cut(s)	761
Sfr274I	CTCGAG	1 cut(s)	1041
SinI	GGWCC	1 cut(s)	131
SlaI	CTCGAG	1 cut(s)	1041
SmiMI	CAYNNNNRTG	1 cut(s)	785
SmlI	CTYRAG	5 cut(s)	47, 91, 206, 807, 1041
SmoI	CTYRAG	5 cut(s)	47, 91, 206, 807, 1041
SpeI	ACTAGT	1 cut(s)	784
Sse9I	AATT	6 cut(s)	10, 251, 264, 340, 453, 825
SsiI	CCGC	4 cut(s)	274, 487, 1035, 1113
SspMI	CTAG	2 cut(s)	621, 785
SstI	GAGCTC	2 cut(s)	98, 486
StyD4I	CCNGG	2 cut(s)	293, 547
StyI	CCWWGG	3 cut(s)	127, 139, 1051
TaaI	ACNGT	8 cut(s)	245, 331, 421, 710, 730, 817, 861, 1161
TaiI	ACGT	2 cut(s)	699, 879
TaqI	TCGA	1 cut(s)	1042
TasI	AATT	6 cut(s)	10, 251, 264, 340, 453, 825
TatI	WGTACW	1 cut(s)	725
TauI	GCSGC	1 cut(s)	1037
TfiI	GAWTC	6 cut(s)	202, 289, 470, 637, 989, 1013
Tru1I	TTAA	6 cut(s)	240, 267, 336, 426, 524, 872
Tru9I	TTAA	6 cut(s)	240, 267, 336, 426, 524, 872
TscAI	CASTG	3 cut(s)	105, 250, 660
TseFI	GTSAC	2 cut(s)	215, 554
TseI	GCWGC	4 cut(s)	368, 631, 946, 1153
Tsp45I	GTSAC	2 cut(s)	215, 554
TspDTI	ATGAA	2 cut(s)	198, 927
TspGWI	ACGGA	2 cut(s)	248, 1139
TspRI	CASTG	3 cut(s)	105, 250, 660
VpaK11BI	GGWCC	1 cut(s)	131
XhoI	CTCGAG	1 cut(s)	1041
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	2 cut(s)	621, 785
ZrmI	AGTACT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.