Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006590

Physical Location & Seq

Genomic Coordinates Forward (+)

279362 .. 282337

Gene Structure 2976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00276790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGAGTGACAATTTGATGGAGAAAGTGAGTGCTTTTGGTGAACGCCTCAAGATTGAAGGGAGTGAAGTCGGCCGAAAGATGAGTGCCGGCTTGAGCTCAGTGAGCTTCAAGGTGAAGGAGCTTTTCCAAGGTCCAAACCAAGGAGATAAGATCGTTGAAGAGGCCACGTCAGAGGCACTTGATGAACCTGACTGGGCATTGAATCTTGAGATTTGTGATATGATCAATACTGAAAGAGTTAACAGTGTTGAATTGATCCGTGGAATAAAAAAGCGCATTATGTTGAAGAATCCTAGGGTTCAGTACCTTTCTTTGGTACTGCTTGAAACAGTTGTTAAAAATTGTGAGAAGGCTTTCTCAGAGATAGCAGCTGAGAGAGTTCTTGATGAGATGGTGAAGGTGATTGATGACCCTCAGACTGTTGTTAATAATCGCAACAAGGCTTTGGTGCTGATCGAAGCATGGGGAGAATCAACCGGGGAGCTCCGCTATCTGCCTGTTTTCGAGGAAACATACAAGTTTGGCACCTATTTTCACTCCCCTCGTTCAGTTTCAGCTTCAGAGTTAGATGCTGGTCTTTCCCAGCAGATTCCAGTTGATATTCCTGTGCAAAGCTTTACCCCTGAACAATCAAAGGAAGCATTTGACGTTGCAAGAAACAGTATTGAGCTTCTTAGTACTGTTTTTTCTTCTTCACCCCAACAAGATGCTTTACAGGATGACTTGACAACCACACTTGTGTACCAATGCCGTCAGTCTCAAGCCACTGTGCAAAGAATTATAGAGTCAGCTGGAGAGAACGAGGCCCTGCTGTTTGAAGCGTTAAACGTGAATGATGAGATCTGTAAAGCTCTATCCAAGTATGAAGAACTGACGAAGCCTTCTGTTGCCCACCAGCAGCCAGAACCTGCAATGATACCTGTTGCTGTTGAGCCTGATGAATCACCAATTCACACGAAAGAGGATTCCTTGATCAGAAAACCAGCTGGTTCTCGAGGTGTCCCTCATGCAGGGATCAATGATGACATGATGGATGATCTCGATGAGATGATATTTGGCAAGAAAGGTGGGAGCTCATCGGAAGGAGGCCAAGATCCAAAGAAGCAGCAGCCGCCGTCAAAGGATGACCTGATCAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007088 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030276 GO:0033043 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0045839 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

380

Amino Acids

42.1

Weight (kDa)

4.65

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VHS	PF00790	49 - 159	8.9e-25	VHS domain
GAT	PF03127	219 - 293	4.9e-16	GAT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16880 AT5G16880 AT5G16880 AT5G16880
fragaria_vesca	FvH4_7g34030 FvH4_7g34030 FvH4_7g34030 FvH4_7g34030 FvH4_7g34030 FvH4_7g34030
malus_domestica	MD01G1236800.v1.1 MD07G1309400.v1.1
prunus_persica	Prupe.2G326800_v2.0.a1
pyrus_communis	pycom01g24450 pycom07g28140
rosa_chinensis	RchiOBHm_Chr1g0384291
rosa_laevigata	RLG00000026051
rosa_multiflora	Rmu_co8343069.1_g000001 Rmu_sc0016737.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276790
rosa_rugosa	Rorug01G0446500
rosa_samantha	Rh1AG472100 Rh1BG429700 Rh1CG442300 Rh1DG462400
rosa_wichuraiana	Rw1G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	916
AccB1I	GGYRCC	1 cut(s)	524
AciI	CCGC	2 cut(s)	487, 1112
AclWI	GGATC	3 cut(s)	250, 1022, 1088
AcoI	YGGCCR	1 cut(s)	70
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	4 cut(s)	305, 318, 679, 743
AfiI	CCNNNNNNNGG	3 cut(s)	140, 313, 1010
AgsI	TTSAA	8 cut(s)	56, 109, 158, 202, 251, 286, 326, 818
AjiI	CACGTC	1 cut(s)	168
AleI	CACNNNNGTG	1 cut(s)	737
Alw21I	GWGCWC	3 cut(s)	98, 486, 1076
Alw26I	GTCTC	1 cut(s)	762
AlwI	GGATC	3 cut(s)	250, 1022, 1088
AlwNI	CAGNNNCTG	1 cut(s)	908
Ama87I	CYCGRG	1 cut(s)	993
AoxI	GGCC	4 cut(s)	70, 162, 804, 1087
ApeKI	GCWGC	4 cut(s)	368, 898, 1105, 1108
Asp700I	GAANNNNTTC	1 cut(s)	353
AspA2I	CCTAGG	1 cut(s)	293
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	2 cut(s)	131, 805
AsuC2I	CCSGG	1 cut(s)	478
AsuHPI	GGTGA	6 cut(s)	50, 124, 406, 412, 687, 936
AvaI	CYCGRG	1 cut(s)	993
AvaII	GGWCC	1 cut(s)	131
AvrII	CCTAGG	1 cut(s)	293
BaeI	ACNNNNGTAYC	2 cut(s)	725, 758
BanI	GGYRCC	1 cut(s)	524
BanII	GRGCYC	3 cut(s)	98, 486, 1076
Bbv12I	GWGCWC	3 cut(s)	98, 486, 1076
BbvI	GCAGC	4 cut(s)	380, 910, 1117, 1120
BccI	CCATC	3 cut(s)	10, 385, 1024
BceAI	ACGGC	2 cut(s)	735, 1099
BclI	TGATCA	3 cut(s)	222, 972, 1131
BcnI	CCSGG	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	762
BfaI	CTAG	1 cut(s)	294
BfuAI	ACCTGC	1 cut(s)	916
BglII	AGATCT	1 cut(s)	840
BisI	GCNGC	5 cut(s)	369, 899, 1106, 1109, 1112
BlnI	CCTAGG	1 cut(s)	293
BlsI	GCNGC	5 cut(s)	370, 900, 1107, 1110, 1113
BmcAI	AGTACT	1 cut(s)	679
Bme1390I	CCNGG	1 cut(s)	478
Bme18I	GGWCC	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	993
BmgBI	CACGTC	1 cut(s)	168
BmgT120I	GGNCC	2 cut(s)	131, 805
BmiI	GGNNCC	1 cut(s)	526
BmrFI	CCNGG	1 cut(s)	478
BmrI	ACTGGG	1 cut(s)	202
BmsI	GCATC	2 cut(s)	559, 697
BmuI	ACTGGG	1 cut(s)	202
BpmI	CTGGAG	1 cut(s)	813
BpuEI	CTTGAG	4 cut(s)	32, 112, 227, 744
BpuMI	CCSGG	1 cut(s)	478
BsaJI	CCNNGG	5 cut(s)	127, 139, 259, 293, 477
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 313, 1010
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	2 cut(s)	197, 593
Bse3DI	GCAATG	1 cut(s)	918
BseDI	CCNNGG	5 cut(s)	127, 139, 259, 293, 477
BseGI	GGATG	3 cut(s)	724, 1039, 1129
BseLI	CCNNNNNNNGG	3 cut(s)	140, 313, 1010
BseMI	GCAATG	1 cut(s)	918
BseMII	CTCAG	4 cut(s)	111, 363, 372, 428
BseNI	ACTGG	2 cut(s)	197, 593
BseX3I	CGGCCG	1 cut(s)	70
BseXI	GCAGC	4 cut(s)	380, 910, 1117, 1120
BseYI	CCCAGC	1 cut(s)	582
Bsh1285I	CGRYCG	1 cut(s)	73
BshFI	GGCC	4 cut(s)	72, 164, 806, 1089
BshNI	GGYRCC	1 cut(s)	524
BsiEI	CGRYCG	1 cut(s)	73
BsiHKAI	GWGCWC	3 cut(s)	98, 486, 1076
BsiHKCI	CYCGRG	1 cut(s)	993
BsiSI	CCGG	2 cut(s)	87, 477
BslFI	GGGAC	1 cut(s)	986
BslI	CCNNNNNNNGG	3 cut(s)	140, 313, 1010
BsmAI	GTCTC	1 cut(s)	762
BsmFI	GGGAC	1 cut(s)	986
BsnI	GGCC	4 cut(s)	72, 164, 806, 1089
BsoBI	CYCGRG	1 cut(s)	993
Bsp1286I	GDGCHC	3 cut(s)	98, 486, 1076
BspACI	CCGC	2 cut(s)	487, 1112
BspANI	GGCC	4 cut(s)	72, 164, 806, 1089
BspCNI	CTCAG	4 cut(s)	110, 364, 371, 427
BspLI	GGNNCC	1 cut(s)	526
BspMI	ACCTGC	1 cut(s)	916
BspPI	GGATC	3 cut(s)	250, 1022, 1088
BspT107I	GGYRCC	1 cut(s)	524
BsrDI	GCAATG	1 cut(s)	918
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	2 cut(s)	197, 593
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	5 cut(s)	127, 139, 259, 293, 477
BssT1I	CCWWGG	3 cut(s)	127, 139, 293
Bst4CI	ACNGT	6 cut(s)	245, 331, 421, 662, 682, 769
Bst6I	CTCTTC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	5 cut(s)	97, 358, 372, 414, 674
BstDSI	CCRYGG	1 cut(s)	259
BstENI	CCTNNNNNAGG	1 cut(s)	1008
BstF5I	GGATG	3 cut(s)	724, 1039, 1129
BstHHI	GCGC	1 cut(s)	276
BstMAI	GTCTC	1 cut(s)	762
BstMCI	CGRYCG	1 cut(s)	73
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 1111
BstSCI	CCNGG	1 cut(s)	476
BstV1I	GCAGC	4 cut(s)	380, 910, 1117, 1120
BstX2I	RGATCY	2 cut(s)	840, 1093
BstYI	RGATCY	2 cut(s)	840, 1093
BstZI	CGGCCG	1 cut(s)	70
BsuRI	GGCC	4 cut(s)	72, 164, 806, 1089
BtgI	CCRYGG	1 cut(s)	259
BtrI	CACGTC	1 cut(s)	168
BtsCI	GGATG	3 cut(s)	724, 1039, 1129
BtsIMutI	CAGTG	3 cut(s)	105, 250, 765
BveI	ACCTGC	1 cut(s)	916
Cac8I	GCNNGC	1 cut(s)	88
CaiI	CAGNNNCTG	1 cut(s)	908
CfoI	GCGC	1 cut(s)	276
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	2 cut(s)	131, 805
Csp6I	GTAC	4 cut(s)	304, 317, 678, 742
CspCI	CAANNNNNGTGG	2 cut(s)	1048, 1083
CviAII	CATG	3 cut(s)	462, 1007, 1027
CviQI	GTAC	4 cut(s)	304, 317, 678, 742
DdeI	CTNAG	5 cut(s)	97, 358, 372, 414, 674
EaeI	YGGCCR	1 cut(s)	70
EagI	CGGCCG	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Ecl136II	GAGCTC	3 cut(s)	96, 484, 1074
EclXI	CGGCCG	1 cut(s)	70
Eco130I	CCWWGG	3 cut(s)	127, 139, 293
Eco24I	GRGCYC	3 cut(s)	98, 486, 1076
Eco47I	GGWCC	1 cut(s)	131
Eco52I	CGGCCG	1 cut(s)	70
Eco53kI	GAGCTC	3 cut(s)	96, 484, 1074
Eco57I	CTGAAG	1 cut(s)	543
Eco88I	CYCGRG	1 cut(s)	993
EcoICRI	GAGCTC	3 cut(s)	96, 484, 1074
EcoNI	CCTNNNNNAGG	1 cut(s)	1008
EcoO109I	RGGNCCY	1 cut(s)	805
EcoT14I	CCWWGG	3 cut(s)	127, 139, 293
EcoT38I	GRGCYC	3 cut(s)	98, 486, 1076
ErhI	CCWWGG	3 cut(s)	127, 139, 293
FaeI	CATG	3 cut(s)	465, 1010, 1030
FaiI	YATR	8 cut(s)	221, 281, 463, 514, 782, 864, 1008, 1028
FaqI	GGGAC	1 cut(s)	986
FatI	CATG	3 cut(s)	461, 1006, 1026
FbaI	TGATCA	3 cut(s)	222, 972, 1131
Fnu4HI	GCNGC	5 cut(s)	369, 899, 1106, 1109, 1112
FokI	GGATG	3 cut(s)	731, 1046, 1136
FriOI	GRGCYC	3 cut(s)	98, 486, 1076
Fsp4HI	GCNGC	5 cut(s)	369, 899, 1106, 1109, 1112
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	5 cut(s)	369, 899, 1106, 1109, 1112
GsaI	CCCAGC	1 cut(s)	586
GsuI	CTGGAG	1 cut(s)	813
HaeIII	GGCC	4 cut(s)	72, 164, 806, 1089
HapII	CCGG	2 cut(s)	87, 477
HhaI	GCGC	1 cut(s)	276
Hin1II	CATG	3 cut(s)	465, 1010, 1030
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	613
HinfI	GANTC	7 cut(s)	202, 289, 470, 589, 785, 941, 965
HpaI	GTTAAC	1 cut(s)	241
HpaII	CCGG	2 cut(s)	87, 477
HphI	GGTGA	6 cut(s)	50, 124, 406, 412, 687, 936
Hpy166II	GTNNAC	3 cut(s)	41, 241, 742
Hpy188I	TCNGA	6 cut(s)	172, 361, 417, 562, 977, 1081
Hpy188III	TCNNGA	5 cut(s)	49, 206, 383, 993, 1040
Hpy8I	GTNNAC	3 cut(s)	41, 241, 742
HpyAV	CCTTC	6 cut(s)	50, 109, 343, 391, 891, 1076
HpyCH4III	ACNGT	6 cut(s)	245, 331, 421, 662, 682, 769
HpyCH4IV	ACGT	3 cut(s)	167, 648, 828
HpyCH4V	TGCA	5 cut(s)	610, 653, 772, 911, 1010
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 1111
HpyF3I	CTNAG	5 cut(s)	97, 358, 372, 414, 674
HpySE526I	ACGT	3 cut(s)	167, 648, 828
Hsp92II	CATG	3 cut(s)	465, 1010, 1030
HspAI	GCGC	1 cut(s)	274
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
Ksp22I	TGATCA	3 cut(s)	222, 972, 1131
KspAI	GTTAAC	1 cut(s)	241
LmnI	GCTCC	4 cut(s)	118, 481, 489, 1071
Lsp1109I	GCAGC	4 cut(s)	380, 910, 1117, 1120
LweI	GCATC	2 cut(s)	559, 697
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	3 cut(s)	167, 648, 828
MaeIII	GTNAC	1 cut(s)	5
MboII	GAAGA	5 cut(s)	170, 298, 681, 684, 878
MflI	RGATCY	2 cut(s)	840, 1093
MhlI	GDGCHC	3 cut(s)	98, 486, 1076
MluCI	AATT	5 cut(s)	10, 251, 340, 777, 948
MlyI	GAGTC	1 cut(s)	794
MroNI	GCCGGC	1 cut(s)	86
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	4 cut(s)	240, 336, 426, 824
MslI	CAYNNNNRTG	1 cut(s)	737
MspA1I	CMGCKG	3 cut(s)	371, 791, 986
MspI	CCGG	2 cut(s)	87, 477
MspR9I	CCNGG	1 cut(s)	478
MwoI	GCNNNNNNNGC	2 cut(s)	102, 1111
NaeI	GCCGGC	1 cut(s)	88
NciI	CCSGG	1 cut(s)	478
NgoMIV	GCCGGC	1 cut(s)	86
NlaIII	CATG	3 cut(s)	465, 1010, 1030
NlaIV	GGNNCC	1 cut(s)	526
NmuCI	GTSAC	1 cut(s)	5
OliI	CACNNNNGTG	1 cut(s)	737
PaeR7I	CTCGAG	1 cut(s)	993
PdiI	GCCGGC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	6 cut(s)	202, 289, 470, 589, 941, 965
PkrI	GCNGC	5 cut(s)	370, 900, 1107, 1110, 1113
PleI	GAGTC	1 cut(s)	793
PpsI	GAGTC	1 cut(s)	793
Psp124BI	GAGCTC	3 cut(s)	98, 486, 1076
PspFI	CCCAGC	1 cut(s)	582
PspN4I	GGNNCC	1 cut(s)	526
PspPI	GGNCC	2 cut(s)	131, 805
PstNI	CAGNNNCTG	1 cut(s)	908
PsuI	RGATCY	2 cut(s)	840, 1093
PvuII	CAGCTG	3 cut(s)	371, 791, 986
RsaI	GTAC	4 cut(s)	305, 318, 679, 743
RsaNI	GTAC	4 cut(s)	304, 317, 678, 742
RseI	CAYNNNNRTG	1 cut(s)	737
SacI	GAGCTC	3 cut(s)	98, 486, 1076
SaqAI	TTAA	4 cut(s)	240, 336, 426, 824
SatI	GCNGC	5 cut(s)	369, 899, 1106, 1109, 1112
Sau96I	GGNCC	2 cut(s)	131, 805
ScaI	AGTACT	1 cut(s)	679
SchI	GAGTC	1 cut(s)	794
ScrFI	CCNGG	1 cut(s)	478
SduI	GDGCHC	3 cut(s)	98, 486, 1076
SfaNI	GCATC	2 cut(s)	559, 697
Sfr274I	CTCGAG	1 cut(s)	993
SinI	GGWCC	1 cut(s)	131
SlaI	CTCGAG	1 cut(s)	993
SmiMI	CAYNNNNRTG	1 cut(s)	737
SmlI	CTYRAG	5 cut(s)	47, 91, 206, 759, 993
SmoI	CTYRAG	5 cut(s)	47, 91, 206, 759, 993
Sse9I	AATT	5 cut(s)	10, 251, 340, 777, 948
SsiI	CCGC	2 cut(s)	487, 1112
SspMI	CTAG	1 cut(s)	294
SstI	GAGCTC	3 cut(s)	98, 486, 1076
StyD4I	CCNGG	1 cut(s)	476
StyI	CCWWGG	3 cut(s)	127, 139, 293
TaaI	ACNGT	6 cut(s)	245, 331, 421, 662, 682, 769
TaiI	ACGT	3 cut(s)	170, 651, 831
TaqI	TCGA	4 cut(s)	456, 504, 994, 1041
TasI	AATT	5 cut(s)	10, 251, 340, 777, 948
TatI	WGTACW	1 cut(s)	677
TauI	GCSGC	1 cut(s)	1114
TfiI	GAWTC	6 cut(s)	202, 289, 470, 589, 941, 965
Tru1I	TTAA	4 cut(s)	240, 336, 426, 824
Tru9I	TTAA	4 cut(s)	240, 336, 426, 824
TscAI	CASTG	3 cut(s)	105, 250, 772
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	4 cut(s)	368, 898, 1105, 1108
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	3 cut(s)	198, 879, 954
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	3 cut(s)	105, 250, 772
VpaK11BI	GGWCC	1 cut(s)	131
XagI	CCTNNNNNAGG	1 cut(s)	1008
XhoI	CTCGAG	1 cut(s)	993
XmaJI	CCTAGG	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	1 cut(s)	294
ZrmI	AGTACT	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.