AT5G17400

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009382
Physical Location & Seq
Reverse (-)
5728789 .. 5730430
1642 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17400.1

Sequence Viewer

Length: 921 bp
ATGGCTTTGATCGGAAAATCCGAGAGATTCTCTGCTGATTTTGTGATGGGTGGTGCTGCAGCCATTGTTGCCAAATCTGCAGCTGCTCCAATCGAAAGGGTGAAGCTTTTACTGCAGAATCAAGGGGAGATGATAAAGACTGGACATCTCATAAGACCTTACACTGGTTTGGGTAATTGCTTTACCAGAATCTATAGAGAAGAAGGTGTTTTGTCCTTTTGGAGAGGAAACCAAGCCAATGTCATACGATATTTCCCTACACAGGCTTCCAACTTTGCATTTAAAGGTTACTTCAAGAACCTTCTTGGATGTTCGAAAGAGAAAGATGGTTACTTGAAGTGGTTTGCTGGAAATGTAGCTTCGGGAAGTGCTGCTGGAGCAACAACTTCCTTGTTTCTGTACCATTTGGATTATGCGCGGACCCGTTTAGGCACTGATGCAAAGGAATGTTCTGTTAATGGCAAGAGACAGTTTAAAGGGATGATCGATGTGTATCGTAAAACTTTGTCAAGTGACGGTATTAAAGGTCTTTACCGTGGATTTGGTGTGTCAATAGTGGGAATCACTCTTTACCGAGGAATGTATTTTGGGATGTACGACACCATCAAACCCATTGTGTTAGTCGGTTCCTTAGAGGGAAACTTCTTGGCTAGTTTTCTATTGGGTTGGAGTATTACTACCTCTGCAGGCGTCATTGCTTACCCTTTTGACACACTTAGGAGGAGAATGATGCTTACATCAGGACAACCTGTTAAATACCGGAACACCATTCATGCCTTAAGAGAGATATTGAAGTCGGAAGGGTTCTATGCGCTATATAGAGGAGTTACTGCGAACATGCTTCTTGGAGTAGCAGGAGCAGGAGTGCTTGCGGGATATGATCAGCTTCACCAGATTGCTTATAAGCATTGGGTTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000295 GO:0003006 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009791 GO:0009987 GO:0010154 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022414 GO:0022622 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0042175 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0098656 GO:0098827 GO:0099402 GO:0099516 GO:1901264 GO:1901505 GO:1901679
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

306

Amino Acids

33.79

Weight (kDa)

9.82

Isoelectric Point (pI)

16.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 8 - 103 1.4e-23 Mitochondrial carrier protein
Mito_carr PF00153 115 - 205 6.3e-19 Mitochondrial carrier protein
Mito_carr PF00153 214 - 302 2.9e-17 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 903
AccII CGCG 1 cut(s) 418
AciI CCGC 2 cut(s) 418, 872
AcyI GRCGYC 1 cut(s) 690
AfaI GTAC 2 cut(s) 401, 596
AfiI CCNNNNNNNGG 2 cut(s) 164, 262
AflII CTTAAG 1 cut(s) 778
AgsI TTSAA 3 cut(s) 295, 337, 793
AluBI AGCT 4 cut(s) 83, 106, 359, 886
AluI AGCT 4 cut(s) 83, 106, 359, 886
Alw26I GTCTC 1 cut(s) 460
ApeKI GCWGC 5 cut(s) 56, 59, 80, 83, 371
AspLEI GCGC 2 cut(s) 418, 814
AspS9I GGNCC 1 cut(s) 420
AsuHPI GGTGA 2 cut(s) 112, 881
AsuII TTCGAA 1 cut(s) 314
AvaII GGWCC 1 cut(s) 420
BbvI GCAGC 5 cut(s) 43, 70, 71, 92, 358
BccI CCATC 3 cut(s) 40, 320, 611
BclI TGATCA 1 cut(s) 880
BcoDI GTCTC 1 cut(s) 460
BfaI CTAG 1 cut(s) 651
BfmI CTRYAG 5 cut(s) 57, 78, 113, 193, 684
BfrI CTTAAG 1 cut(s) 778
BisI GCNGC 5 cut(s) 57, 60, 81, 84, 372
BlsI GCNGC 5 cut(s) 58, 61, 82, 85, 373
Bme18I GGWCC 1 cut(s) 420
BmgT120I GGNCC 1 cut(s) 420
BmiI GGNNCC 2 cut(s) 422, 628
BmsI GCATC 2 cut(s) 427, 720
BplI GAGNNNNNCTC 2 cut(s) 14, 46
BpmI CTGGAG 1 cut(s) 396
Bpu14I TTCGAA 1 cut(s) 314
Bsa29I ATCGAT 1 cut(s) 486
BsaBI GATNNNNATC 1 cut(s) 492
BsaHI GRCGYC 1 cut(s) 690
BsaJI CCNNGG 2 cut(s) 535, 574
BsaWI WCCGGW 1 cut(s) 759
BsaXI ACNNNNNCTCC 2 cut(s) 849, 879
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 262
Bse1I ACTGG 2 cut(s) 145, 169
Bse3DI GCAATG 1 cut(s) 693
Bse8I GATNNNNATC 1 cut(s) 492
BseCI ATCGAT 1 cut(s) 486
BseDI CCNNGG 2 cut(s) 535, 574
BseGI GGATG 3 cut(s) 314, 486, 597
BseJI GATNNNNATC 1 cut(s) 492
BseLI CCNNNNNNNGG 2 cut(s) 164, 262
BseMI GCAATG 1 cut(s) 693
BseNI ACTGG 2 cut(s) 145, 169
BseRI GAGGAG 2 cut(s) 736, 837
BseXI GCAGC 5 cut(s) 43, 70, 71, 92, 358
Bsh1236I CGCG 1 cut(s) 418
BshVI ATCGAT 1 cut(s) 486
BsiSI CCGG 1 cut(s) 760
BslI CCNNNNNNNGG 2 cut(s) 164, 262
BsmAI GTCTC 1 cut(s) 460
Bsp119I TTCGAA 1 cut(s) 314
Bsp143I GATC 3 cut(s) 9, 483, 880
BspACI CCGC 2 cut(s) 418, 872
BspDI ATCGAT 1 cut(s) 486
BspFNI CGCG 1 cut(s) 418
BspLI GGNNCC 2 cut(s) 422, 628
BspMAI CTGCAG 4 cut(s) 61, 82, 117, 688
BspT104I TTCGAA 1 cut(s) 314
BspTI CTTAAG 1 cut(s) 778
BsrDI GCAATG 1 cut(s) 693
BsrI ACTGG 2 cut(s) 145, 169
BssECI CCNNGG 2 cut(s) 535, 574
BssMI GATC 3 cut(s) 9, 483, 880
BssNI GRCGYC 1 cut(s) 690
Bst4CI ACNGT 3 cut(s) 471, 518, 536
BstACI GRCGYC 1 cut(s) 690
BstAFI CTTAAG 1 cut(s) 778
BstBI TTCGAA 1 cut(s) 314
BstC8I GCNNGC 2 cut(s) 688, 870
BstDEI CTNAG 2 cut(s) 631, 716
BstDSI CCRYGG 1 cut(s) 535
BstF5I GGATG 3 cut(s) 314, 486, 597
BstFNI CGCG 1 cut(s) 418
BstHHI GCGC 2 cut(s) 418, 814
BstKTI GATC 3 cut(s) 12, 486, 883
BstMAI GTCTC 1 cut(s) 460
BstMBI GATC 3 cut(s) 9, 483, 880
BstMWI GCNNNNNNNGC 4 cut(s) 68, 77, 112, 377
BstNSI RCATGY 1 cut(s) 841
BstSFI CTRYAG 5 cut(s) 57, 78, 113, 193, 684
BstUI CGCG 1 cut(s) 418
BstV1I GCAGC 5 cut(s) 43, 70, 71, 92, 358
Bsu15I ATCGAT 1 cut(s) 486
BsuTUI ATCGAT 1 cut(s) 486
BtgI CCRYGG 1 cut(s) 535
BtsCI GGATG 3 cut(s) 314, 486, 597
BtsIMutI CAGTG 2 cut(s) 162, 432
Cac8I GCNNGC 2 cut(s) 688, 870
CfoI GCGC 2 cut(s) 418, 814
Cfr13I GGNCC 1 cut(s) 420
ClaI ATCGAT 1 cut(s) 486
CseI GACGC 1 cut(s) 679
Csp6I GTAC 2 cut(s) 400, 595
CviAII CATG 2 cut(s) 773, 838
CviJI RGCY 9 cut(s) 5, 62, 83, 106, 236, 266, 359, 650, 886
CviKI_1 RGCY 9 cut(s) 5, 62, 83, 106, 236, 266, 359, 650, 886
CviQI GTAC 2 cut(s) 400, 595
DdeI CTNAG 2 cut(s) 631, 716
DpnI GATC 3 cut(s) 11, 485, 882
DpnII GATC 3 cut(s) 9, 483, 880
DraI TTTAAA 2 cut(s) 283, 475
Eco47I GGWCC 1 cut(s) 420
FaeI CATG 2 cut(s) 776, 841
FatI CATG 2 cut(s) 772, 837
FauI CCCGC 1 cut(s) 865
FbaI TGATCA 1 cut(s) 880
Fnu4HI GCNGC 5 cut(s) 57, 60, 81, 84, 372
FokI GGATG 3 cut(s) 321, 493, 604
Fsp4HI GCNGC 5 cut(s) 57, 60, 81, 84, 372
FspBI CTAG 1 cut(s) 651
GlaI GCGC 2 cut(s) 417, 813
GluI GCNGC 5 cut(s) 57, 60, 81, 84, 372
GsuI CTGGAG 1 cut(s) 396
HapII CCGG 1 cut(s) 760
HgaI GACGC 1 cut(s) 679
HhaI GCGC 2 cut(s) 418, 814
Hin1I GRCGYC 1 cut(s) 690
Hin1II CATG 2 cut(s) 776, 841
Hin6I GCGC 2 cut(s) 416, 812
HinP1I GCGC 2 cut(s) 416, 812
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 4 cut(s) 27, 118, 189, 561
HpaII CCGG 1 cut(s) 760
HphI GGTGA 2 cut(s) 112, 881
Hpy188I TCNGA 3 cut(s) 14, 22, 799
Hpy188III TCNNGA 3 cut(s) 295, 363, 741
HpyAV CCTTC 3 cut(s) 197, 311, 794
HpyCH4III ACNGT 3 cut(s) 471, 518, 536
HpyCH4V TGCA 6 cut(s) 59, 80, 115, 278, 440, 686
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 77, 112, 377
HpyF3I CTNAG 2 cut(s) 631, 716
Hsp92I GRCGYC 1 cut(s) 690
Hsp92II CATG 2 cut(s) 776, 841
HspAI GCGC 2 cut(s) 416, 812
Ksp22I TGATCA 1 cut(s) 880
Kzo9I GATC 3 cut(s) 9, 483, 880
LmnI GCTCC 3 cut(s) 91, 377, 857
Lsp1109I GCAGC 5 cut(s) 43, 70, 71, 92, 358
LweI GCATC 2 cut(s) 427, 720
MaeI CTAG 1 cut(s) 651
MaeIII GTNAC 4 cut(s) 287, 329, 512, 826
MalI GATC 3 cut(s) 11, 485, 882
MboI GATC 3 cut(s) 9, 483, 880
MboII GAAGA 1 cut(s) 212
MluCI AATT 1 cut(s) 175
MmeI TCCRAC 3 cut(s) 294, 647, 777
MnlI CCTC 6 cut(s) 218, 569, 628, 691, 714, 815
MseI TTAA 6 cut(s) 282, 456, 474, 522, 753, 779
MspA1I CMGCKG 1 cut(s) 83
MspCI CTTAAG 1 cut(s) 778
MspI CCGG 1 cut(s) 760
MvnI CGCG 1 cut(s) 418
MwoI GCNNNNNNNGC 4 cut(s) 68, 77, 112, 377
NdeII GATC 3 cut(s) 9, 483, 880
NlaIII CATG 2 cut(s) 776, 841
NlaIV GGNNCC 2 cut(s) 422, 628
NmuCI GTSAC 1 cut(s) 512
NspI RCATGY 1 cut(s) 841
NspV TTCGAA 1 cut(s) 314
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PfeI GAWTC 4 cut(s) 27, 118, 189, 561
PkrI GCNGC 5 cut(s) 58, 61, 82, 85, 373
PsiI TTATAA 1 cut(s) 903
PspN4I GGNNCC 2 cut(s) 422, 628
PspPI GGNCC 1 cut(s) 420
PstI CTGCAG 4 cut(s) 61, 82, 117, 688
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 2 cut(s) 401, 596
RsaNI GTAC 2 cut(s) 400, 595
SaqAI TTAA 6 cut(s) 282, 456, 474, 522, 753, 779
SatI GCNGC 5 cut(s) 57, 60, 81, 84, 372
Sau3AI GATC 3 cut(s) 9, 483, 880
Sau96I GGNCC 1 cut(s) 420
SfaNI GCATC 2 cut(s) 427, 720
SfcI CTRYAG 5 cut(s) 57, 78, 113, 193, 684
SfuI TTCGAA 1 cut(s) 314
SinI GGWCC 1 cut(s) 420
SmlI CTYRAG 1 cut(s) 778
SmoI CTYRAG 1 cut(s) 778
Sse9I AATT 1 cut(s) 175
SsiI CCGC 2 cut(s) 418, 872
SspMI CTAG 1 cut(s) 651
TaaI ACNGT 3 cut(s) 471, 518, 536
TaqI TCGA 3 cut(s) 93, 314, 486
TasI AATT 1 cut(s) 175
TfiI GAWTC 4 cut(s) 27, 118, 189, 561
Tru1I TTAA 6 cut(s) 282, 456, 474, 522, 753, 779
Tru9I TTAA 6 cut(s) 282, 456, 474, 522, 753, 779
TscAI CASTG 2 cut(s) 169, 439
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 5 cut(s) 56, 59, 80, 83, 371
Tsp45I GTSAC 1 cut(s) 512
TspDTI ATGAA 1 cut(s) 761
TspRI CASTG 2 cut(s) 169, 439
Vha464I CTTAAG 1 cut(s) 778
VpaK11BI GGWCC 1 cut(s) 420
XceI RCATGY 1 cut(s) 841
XspI CTAG 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.