Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009382

Physical Location & Seq

Genomic Coordinates Forward (+)

7610966 .. 7614061

Gene Structure 3096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g13470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGGAAACAATCTGAAAAGTTTTCTGCGGATTTTGTAATGGGAGGAATGGCTGCATTGGTAGCGAAGACCGCAGCAGCACCTATTGAAAGAGTAAAGCTTTTGTTGCAAAATCAAGGGGAGATGATAAAGAGAGGACAACTCAATAGACCTTATAAGGGTGTTGGTGATGGCTTTAGGAGGGTTTTTAAGGAAGAAGGCATGTTGGCCTTTTGGAGAGGGAACCAGGCCAATGTTATTCGATATTTTCCTACTCAGGCTTTCAACTTTGCATTTAAAGGTTACTTCAAAAGCATTTTTGGCCGCTCAAAAGAGAAAGATGGATACATAAAGTGGTTTGCTGGAAATGTGGCTTCAGGAAGTGCTGCTGGAGCAACAACTTCATTATTTCTATATCATCTGGATTATGCACGTACACGGCTAGGCACTGATGCAAGGCAGGGCGGAGTTAATGGTCGACAACAATTCAGAGGGATTGTAGATGTTTACCGCAAAACTTTGTCAAGTGATGGATTGGTGGGTCTCTATCGAGGGTTTGGGGTTTCCATCATTGGAATTACTCTGTACCGAGGCATGTACTTTGGGATTTATGACACCTTGAAGCCTATTGTTTTGGTTGGACCTTTAGAGGGAAATTTTTTTGCTAGTTTCTTTCTTGGTTGGAGTGTCACAACAGTCTCTGGGATCTGTGCCTATCCATTTGATACTCTTCGGAGGAGAATGATGCTAACCTCAGGACACAGCACAAAGTATCGCAATGGCTTACATGCATTTCGGGAGATTGTATACCTTGAGGGTTTCACAACACTATTCCGAGGAGTTACTGCAAATATGCTTGTAGGGGTTGCTGGGGCTGGGGTACTAGCAGGATATGATCAGCTGCAACGACTTGCATACAAACACGGTTATTCTGATGAGCCAAATCAAAGAGTTGTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000295 GO:0003006 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009791 GO:0009987 GO:0010154 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022414 GO:0022622 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0042175 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0098656 GO:0098827 GO:0099402 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

314

Amino Acids

34.78

Weight (kDa)

10.04

Isoelectric Point (pI)

17.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	6 - 103	1.8e-23	Mitochondrial carrier protein
Mito_carr	PF00153	113 - 203	2e-18	Mitochondrial carrier protein
Mito_carr	PF00153	212 - 300	8.1e-17	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17400
fragaria_vesca	FvH4_5g13470
malus_domestica	MD06G1204800.v1.1 MD14G1215900.v1.1
prunus_persica	Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1
pyrus_communis	pycom06g18290 pycom14g17870
rosa_chinensis	RchiOBHm_Chr7g0183601
rosa_laevigata	RLG00000005038
rosa_multiflora	Rmu_sc0042401.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270370
rosa_rugosa	Rorug06G0458800
rosa_samantha	Rh7AG059900 Rh7BG059600 Rh7CG061600 Rh7DG060000
rosa_wichuraiana	Rw7G004920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AccBSI	CCGCTC	1 cut(s)	306
AccI	GTMKAC	2 cut(s)	457, 786
AciI	CCGC	5 cut(s)	29, 72, 304, 444, 490
AclWI	GGATC	1 cut(s)	692
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	634
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	4 cut(s)	415, 566, 578, 861
AfiI	CCNNNNNNNGG	2 cut(s)	158, 629
AgsI	TTSAA	4 cut(s)	89, 265, 289, 601
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	2 cut(s)	100, 880
AluI	AGCT	2 cut(s)	100, 880
Alw26I	GTCTC	2 cut(s)	527, 682
AlwI	GGATC	1 cut(s)	692
AlwNI	CAGNNNCTG	1 cut(s)	680
AoxI	GGCC	3 cut(s)	207, 228, 301
ApeKI	GCWGC	5 cut(s)	53, 74, 77, 365, 880
ApoI	RAATTY	1 cut(s)	634
AspS9I	GGNCC	1 cut(s)	620
AsuHPI	GGTGA	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	620
AxyI	CCTNAGG	1 cut(s)	733
BbsI	GAAGAC	1 cut(s)	74
BbvI	GCAGC	5 cut(s)	40, 86, 89, 352, 867
BccI	CCATC	4 cut(s)	164, 314, 503, 554
BceAI	ACGGC	1 cut(s)	434
BciT130I	CCWGG	1 cut(s)	227
BciVI	GTATCC	1 cut(s)	317
BclI	TGATCA	1 cut(s)	874
BcoDI	GTCTC	2 cut(s)	527, 682
BfaI	CTAG	3 cut(s)	422, 645, 863
BfuI	GTATCC	1 cut(s)	317
BisI	GCNGC	6 cut(s)	54, 75, 78, 304, 366, 881
BlsI	GCNGC	6 cut(s)	55, 76, 79, 305, 367, 882
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	1 cut(s)	620
BmgT120I	GGNCC	1 cut(s)	620
BmiI	GGNNCC	1 cut(s)	224
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	2 cut(s)	421, 714
BpiI	GAAGAC	1 cut(s)	74
BplI	GAGNNNNNCTC	2 cut(s)	126, 158
BpmI	CTGGAG	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	812
BsaAI	YACGTR	1 cut(s)	413
BsaI	GGTCTC	1 cut(s)	527
BsaJI	CCNNGG	2 cut(s)	568, 814
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 629
Bse21I	CCTNAGG	1 cut(s)	733
Bse3DI	GCAATG	1 cut(s)	763
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	2 cut(s)	568, 814
BseLI	CCNNNNNNNGG	2 cut(s)	158, 629
BseMI	GCAATG	1 cut(s)	763
BseMII	CTCAG	2 cut(s)	269, 747
BseRI	GAGGAG	2 cut(s)	730, 831
BseXI	GCAGC	5 cut(s)	40, 86, 89, 352, 867
BseYI	CCCAGC	2 cut(s)	848, 854
BshFI	GGCC	3 cut(s)	209, 230, 303
BslI	CCNNNNNNNGG	2 cut(s)	158, 629
BsmAI	GTCTC	2 cut(s)	527, 682
BsnI	GGCC	3 cut(s)	209, 230, 303
Bso31I	GGTCTC	1 cut(s)	527
Bsp143I	GATC	2 cut(s)	684, 874
BspACI	CCGC	5 cut(s)	29, 72, 304, 444, 490
BspANI	GGCC	3 cut(s)	209, 230, 303
BspCNI	CTCAG	2 cut(s)	268, 746
BspLI	GGNNCC	1 cut(s)	224
BspPI	GGATC	1 cut(s)	692
BspTNI	GGTCTC	1 cut(s)	527
BsrBI	CCGCTC	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	763
BssECI	CCNNGG	2 cut(s)	568, 814
BssMI	GATC	2 cut(s)	684, 874
BssNAI	GTATAC	1 cut(s)	787
Bst1107I	GTATAC	1 cut(s)	787
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	2 cut(s)	676, 905
Bst6I	CTCTTC	1 cut(s)	714
BstBAI	YACGTR	1 cut(s)	413
BstDEI	CTNAG	2 cut(s)	255, 733
BstKTI	GATC	2 cut(s)	687, 877
BstMAI	GTCTC	2 cut(s)	527, 682
BstMBI	GATC	2 cut(s)	684, 874
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 71, 106, 300, 371
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	3 cut(s)	205, 577, 770
BstSCI	CCNGG	1 cut(s)	225
BstV1I	GCAGC	5 cut(s)	40, 86, 89, 352, 867
BstV2I	GAAGAC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	684
BstYI	RGATCY	1 cut(s)	684
BstZ17I	GTATAC	1 cut(s)	787
Bsu36I	CCTNAGG	1 cut(s)	733
BsuI	GTATCC	1 cut(s)	317
BsuRI	GGCC	3 cut(s)	209, 230, 303
BtsIMutI	CAGTG	1 cut(s)	426
CaiI	CAGNNNCTG	1 cut(s)	680
Cfr13I	GGNCC	1 cut(s)	620
Csp6I	GTAC	4 cut(s)	414, 565, 577, 860
CviAII	CATG	3 cut(s)	202, 574, 767
CviQI	GTAC	4 cut(s)	414, 565, 577, 860
DdeI	CTNAG	2 cut(s)	255, 733
DpnI	GATC	2 cut(s)	686, 876
DpnII	GATC	2 cut(s)	684, 874
DraI	TTTAAA	1 cut(s)	277
EaeI	YGGCCR	1 cut(s)	301
Eam1104I	CTCTTC	1 cut(s)	714
EarI	CTCTTC	1 cut(s)	714
EciI	GGCGGA	1 cut(s)	459
Eco31I	GGTCTC	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	620
Eco57I	CTGAAG	1 cut(s)	339
Eco81I	CCTNAGG	1 cut(s)	733
EcoRII	CCWGG	1 cut(s)	225
EcoT22I	ATGCAT	1 cut(s)	772
FaeI	CATG	3 cut(s)	205, 577, 770
FatI	CATG	3 cut(s)	201, 573, 766
FbaI	TGATCA	1 cut(s)	874
FblI	GTMKAC	2 cut(s)	457, 786
Fnu4HI	GCNGC	6 cut(s)	54, 75, 78, 304, 366, 881
Fsp4HI	GCNGC	6 cut(s)	54, 75, 78, 304, 366, 881
FspBI	CTAG	3 cut(s)	422, 645, 863
GluI	GCNGC	6 cut(s)	54, 75, 78, 304, 366, 881
GsaI	CCCAGC	2 cut(s)	852, 858
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	3 cut(s)	209, 230, 303
Hin1II	CATG	3 cut(s)	205, 577, 770
HincII	GTYRAC	1 cut(s)	458
HindII	GTYRAC	1 cut(s)	458
HindIII	AAGCTT	1 cut(s)	98
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	4 cut(s)	416, 458, 487, 787
Hpy188I	TCNGA	5 cut(s)	16, 470, 714, 815, 913
Hpy188III	TCNNGA	4 cut(s)	357, 401, 735, 776
Hpy8I	GTNNAC	4 cut(s)	416, 458, 487, 787
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	2 cut(s)	676, 905
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	9 cut(s)	56, 109, 272, 410, 434, 770, 827, 883, 893
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 71, 106, 300, 371
HpyF3I	CTNAG	2 cut(s)	255, 733
HpySE526I	ACGT	1 cut(s)	412
Hsp92II	CATG	3 cut(s)	205, 577, 770
Ksp22I	TGATCA	1 cut(s)	874
Kzo9I	GATC	2 cut(s)	684, 874
LmnI	GCTCC	1 cut(s)	371
Lsp1109I	GCAGC	5 cut(s)	40, 86, 89, 352, 867
LweI	GCATC	2 cut(s)	421, 714
MaeI	CTAG	3 cut(s)	422, 645, 863
MaeII	ACGT	1 cut(s)	412
MaeIII	GTNAC	3 cut(s)	281, 667, 820
MalI	GATC	2 cut(s)	686, 876
MbiI	CCGCTC	1 cut(s)	306
MboI	GATC	2 cut(s)	684, 874
MboII	GAAGA	3 cut(s)	79, 206, 701
MflI	RGATCY	1 cut(s)	684
MluCI	AATT	3 cut(s)	464, 555, 634
MmeI	TCCRAC	2 cut(s)	598, 641
Mph1103I	ATGCAT	1 cut(s)	772
MseI	TTAA	3 cut(s)	189, 276, 450
MspA1I	CMGCKG	1 cut(s)	880
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	5 cut(s)	62, 71, 106, 300, 371
NdeII	GATC	2 cut(s)	684, 874
NlaIII	CATG	3 cut(s)	205, 577, 770
NlaIV	GGNNCC	1 cut(s)	224
NmuCI	GTSAC	1 cut(s)	667
NsiI	ATGCAT	1 cut(s)	772
NspI	RCATGY	3 cut(s)	205, 577, 770
PkrI	GCNGC	6 cut(s)	55, 76, 79, 305, 367, 882
Ppu21I	YACGTR	1 cut(s)	413
PsiI	TTATAA	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	225
PspFI	CCCAGC	2 cut(s)	848, 854
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	224
PspPI	GGNCC	1 cut(s)	620
PstNI	CAGNNNCTG	1 cut(s)	680
PsuI	RGATCY	1 cut(s)	684
PvuII	CAGCTG	1 cut(s)	880
RsaI	GTAC	4 cut(s)	415, 566, 578, 861
RsaNI	GTAC	4 cut(s)	414, 565, 577, 860
SalI	GTCGAC	1 cut(s)	456
SaqAI	TTAA	3 cut(s)	189, 276, 450
SatI	GCNGC	6 cut(s)	54, 75, 78, 304, 366, 881
Sau3AI	GATC	2 cut(s)	684, 874
Sau96I	GGNCC	1 cut(s)	620
ScrFI	CCNGG	1 cut(s)	227
SfaNI	GCATC	2 cut(s)	421, 714
SinI	GGWCC	1 cut(s)	620
SmlI	CTYRAG	1 cut(s)	791
SmoI	CTYRAG	1 cut(s)	791
Sse9I	AATT	3 cut(s)	464, 555, 634
SsiI	CCGC	5 cut(s)	29, 72, 304, 444, 490
SspMI	CTAG	3 cut(s)	422, 645, 863
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	676, 905
TaiI	ACGT	1 cut(s)	415
TaqI	TCGA	3 cut(s)	241, 457, 529
TasI	AATT	3 cut(s)	464, 555, 634
TatI	WGTACW	1 cut(s)	576
TauI	GCSGC	1 cut(s)	306
Tru1I	TTAA	3 cut(s)	189, 276, 450
Tru9I	TTAA	3 cut(s)	189, 276, 450
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	5 cut(s)	53, 74, 77, 365, 880
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	1 cut(s)	372
TspRI	CASTG	1 cut(s)	433
VpaK11BI	GGWCC	1 cut(s)	620
XapI	RAATTY	1 cut(s)	634
XceI	RCATGY	3 cut(s)	205, 577, 770
XmiI	GTMKAC	2 cut(s)	457, 786
XspI	CTAG	3 cut(s)	422, 645, 863
Zsp2I	ATGCAT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.