Prupe.5G208700_v2.0.a1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0009382
Physical Location & Seq
Reverse (-)
16635402 .. 16638496
3095 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G208700.5

Sequence Viewer

Length: 942 bp
ATGACAAAACAATCTGAGAAGTTTTCTGCAGATTTTGTGATGGGAGGAATGGCAGCATTGGTATCAAAGAGTGCAGCAGCACCCATTGAGAGAGTGAAGCTTCTGTTGCAGAATCAAGGAGAGATGATAAAAAGAGGACAGCTTAAGAGACCTTATATGGGTGTTGGTGATTGCTTTAAAAGGGTCTTTAGAGAAGAAGGCGTCTTGTCCTTCTGGAGAGGCAACCAGGCTAATGTTATTCGATATTTTCCTACTCAGGCCTTCAACTTTGCATTTAAAGGTTACTTCAAAAGCATTTTTGGCTGCTCAAAAGAGAAAGATGGATACTTAAAGTACTTTGCAGGAAATGTGGCTTCAGGAAGTGCTGCTGGAGCAACTACTTCATTATTTCTGTATCACCTGGACTATGCACGAACACGGCTAGGCACTGATGCAAGGGGGTCTTCAGTTAATGGTCAGCGCCAGTTCAGAGGGATTCTAGATGTTTATAGTAAAACCTTGTCAAGTGATGGAATAGCGGGTCTCTATCGAGGTTTTGGGATTTCAATTATTGGGATTACACTGTATCGAGGCATGTACTTTGGGATTTATGACACCATGAAGCCTATTGTTTTGGTTGGGTCTTTGGAGGGGAATTTTTTGGCTAGTTTCTTGCTTGGTTGGAGTGTTACAACAGTCTCTGGGGTCTGTGCCTATCCATTTGATACCCTTAGGCGCAGAATGATGCTTACATCAGGACAACCATCGAAGTATCGCAACGCCATACATGCATTTCGTGAGATTGTTTACCTTGAGGGTTTCACAGCGCTGTTCCGAGGAGTTACTGCAAATATGCTTCTAGGGGTTGCTGGGGCTGGGGTACTTGCAGGATATGATCAGCTGCACCGAATTGCATATAGACATGGTTATTCTATTGAGCCACATCAAAGAGTTTTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000295 GO:0003006 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009791 GO:0009987 GO:0010154 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022414 GO:0022622 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0042175 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0098656 GO:0098827 GO:0099402 GO:0099516 GO:1901264 GO:1901505 GO:1901679
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

314

Amino Acids

34.7

Weight (kDa)

9.91

Isoelectric Point (pI)

22.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 518
AcsI RAATTY 1 cut(s) 634
AcuI CTGAAG 2 cut(s) 339, 429
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 3 cut(s) 335, 578, 861
AfeI AGCGCT 1 cut(s) 807
AfiI CCNNNNNNNGG 1 cut(s) 158
AflII CTTAAG 1 cut(s) 143
AgsI TTSAA 4 cut(s) 265, 289, 546, 937
AjnI CCWGG 2 cut(s) 225, 399
AluBI AGCT 3 cut(s) 100, 142, 880
AluI AGCT 3 cut(s) 100, 142, 880
Alw26I GTCTC 3 cut(s) 142, 527, 682
AlwNI CAGNNNCTG 1 cut(s) 680
Aor51HI AGCGCT 1 cut(s) 807
AoxI GGCC 1 cut(s) 258
ApeKI GCWGC 6 cut(s) 53, 74, 77, 303, 365, 880
ApoI RAATTY 1 cut(s) 634
AspLEI GCGC 3 cut(s) 462, 717, 808
AsuHPI GGTGA 2 cut(s) 179, 389
AxyI CCTNAGG 1 cut(s) 710
BbsI GAAGAC 1 cut(s) 435
BbvI GCAGC 6 cut(s) 65, 86, 89, 290, 352, 867
BccI CCATC 4 cut(s) 34, 314, 503, 751
BceAI ACGGC 1 cut(s) 434
BciT130I CCWGG 2 cut(s) 227, 401
BciVI GTATCC 1 cut(s) 317
BclI TGATCA 1 cut(s) 874
BcoDI GTCTC 3 cut(s) 142, 527, 682
BfaI CTAG 4 cut(s) 422, 479, 645, 839
BfmI CTRYAG 1 cut(s) 27
BfoI RGCGCY 2 cut(s) 463, 809
BfrI CTTAAG 1 cut(s) 143
BfuI GTATCC 1 cut(s) 317
BisI GCNGC 6 cut(s) 54, 75, 78, 304, 366, 881
BlsI GCNGC 6 cut(s) 55, 76, 79, 305, 367, 882
BmcAI AGTACT 1 cut(s) 335
Bme1390I CCNGG 2 cut(s) 227, 401
BmrFI CCNGG 2 cut(s) 227, 401
BmsI GCATC 2 cut(s) 421, 714
BpiI GAAGAC 1 cut(s) 435
BpmI CTGGAG 2 cut(s) 235, 390
BpuEI CTTGAG 1 cut(s) 812
BsaHI GRCGYC 1 cut(s) 201
BsaI GGTCTC 2 cut(s) 142, 527
BsaJI CCNNGG 1 cut(s) 814
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 463
Bse21I CCTNAGG 1 cut(s) 710
BseBI CCWGG 2 cut(s) 227, 401
BseDI CCNNGG 1 cut(s) 814
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMII CTCAG 2 cut(s) 6, 269
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 1 cut(s) 831
BseXI GCAGC 6 cut(s) 65, 86, 89, 290, 352, 867
BseYI CCCAGC 2 cut(s) 848, 854
BsgI GTGCAG 2 cut(s) 93, 866
BshFI GGCC 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 3 cut(s) 142, 527, 682
BsnI GGCC 1 cut(s) 260
Bso31I GGTCTC 2 cut(s) 142, 527
Bsp143I GATC 1 cut(s) 874
BspACI CCGC 1 cut(s) 518
BspANI GGCC 1 cut(s) 260
BspCNI CTCAG 2 cut(s) 7, 268
BspMAI CTGCAG 1 cut(s) 31
BspTI CTTAAG 1 cut(s) 143
BspTNI GGTCTC 2 cut(s) 142, 527
BsrI ACTGG 1 cut(s) 463
BssECI CCNNGG 1 cut(s) 814
BssMI GATC 1 cut(s) 874
BssNI GRCGYC 1 cut(s) 201
Bst2UI CCWGG 2 cut(s) 227, 401
Bst4CI ACNGT 2 cut(s) 564, 676
BstACI GRCGYC 1 cut(s) 201
BstAFI CTTAAG 1 cut(s) 143
BstDEI CTNAG 3 cut(s) 15, 255, 710
BstH2I RGCGCY 2 cut(s) 463, 809
BstHHI GCGC 3 cut(s) 462, 717, 808
BstKTI GATC 1 cut(s) 877
BstMAI GTCTC 3 cut(s) 142, 527, 682
BstMBI GATC 1 cut(s) 874
BstMWI GCNNNNNNNGC 4 cut(s) 106, 300, 371, 767
BstNI CCWGG 2 cut(s) 227, 401
BstNSI RCATGY 2 cut(s) 577, 770
BstSCI CCNGG 2 cut(s) 225, 399
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 6 cut(s) 65, 86, 89, 290, 352, 867
BstV2I GAAGAC 1 cut(s) 435
Bsu36I CCTNAGG 1 cut(s) 710
BsuI GTATCC 1 cut(s) 317
BsuRI GGCC 1 cut(s) 260
BtsIMutI CAGTG 2 cut(s) 426, 560
CaiI CAGNNNCTG 1 cut(s) 680
CfoI GCGC 3 cut(s) 462, 717, 808
CseI GACGC 1 cut(s) 190
Csp6I GTAC 3 cut(s) 334, 577, 860
CviAII CATG 4 cut(s) 574, 598, 767, 902
CviQI GTAC 3 cut(s) 334, 577, 860
DdeI CTNAG 3 cut(s) 15, 255, 710
DpnI GATC 1 cut(s) 876
DpnII GATC 1 cut(s) 874
DraI TTTAAA 2 cut(s) 178, 277
Eco147I AGGCCT 1 cut(s) 260
Eco31I GGTCTC 2 cut(s) 142, 527
Eco47III AGCGCT 1 cut(s) 807
Eco57I CTGAAG 2 cut(s) 339, 429
Eco81I CCTNAGG 1 cut(s) 710
EcoRII CCWGG 2 cut(s) 225, 399
EcoT22I ATGCAT 1 cut(s) 772
FaeI CATG 4 cut(s) 577, 601, 770, 905
FalI AAGNNNNNCTT 2 cut(s) 427, 459
FatI CATG 4 cut(s) 573, 597, 766, 901
FauI CCCGC 1 cut(s) 511
FbaI TGATCA 1 cut(s) 874
Fnu4HI GCNGC 6 cut(s) 54, 75, 78, 304, 366, 881
Fsp4HI GCNGC 6 cut(s) 54, 75, 78, 304, 366, 881
FspBI CTAG 4 cut(s) 422, 479, 645, 839
GlaI GCGC 3 cut(s) 461, 716, 807
GluI GCNGC 6 cut(s) 54, 75, 78, 304, 366, 881
GsaI CCCAGC 2 cut(s) 852, 858
GsuI CTGGAG 2 cut(s) 235, 390
HaeII RGCGCY 2 cut(s) 463, 809
HaeIII GGCC 1 cut(s) 260
HgaI GACGC 1 cut(s) 190
HhaI GCGC 3 cut(s) 462, 717, 808
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 4 cut(s) 577, 601, 770, 905
Hin6I GCGC 3 cut(s) 460, 715, 806
HinP1I GCGC 3 cut(s) 460, 715, 806
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 2 cut(s) 112, 475
HphI GGTGA 2 cut(s) 179, 389
Hpy166II GTNNAC 1 cut(s) 787
Hpy188I TCNGA 3 cut(s) 16, 470, 815
Hpy188III TCNNGA 5 cut(s) 214, 357, 479, 735, 776
Hpy8I GTNNAC 1 cut(s) 787
HpyAV CCTTC 3 cut(s) 191, 220, 271
HpyCH4III ACNGT 2 cut(s) 564, 676
HpyF10VI GCNNNNNNNGC 4 cut(s) 106, 300, 371, 767
HpyF3I CTNAG 3 cut(s) 15, 255, 710
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 4 cut(s) 577, 601, 770, 905
HspAI GCGC 3 cut(s) 460, 715, 806
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 1 cut(s) 874
LmnI GCTCC 1 cut(s) 371
Lsp1109I GCAGC 6 cut(s) 65, 86, 89, 290, 352, 867
LweI GCATC 2 cut(s) 421, 714
MaeI CTAG 4 cut(s) 422, 479, 645, 839
MaeIII GTNAC 3 cut(s) 281, 667, 820
MalI GATC 1 cut(s) 876
MboI GATC 1 cut(s) 874
MboII GAAGA 2 cut(s) 206, 435
MluCI AATT 3 cut(s) 546, 634, 888
MmeI TCCRAC 1 cut(s) 641
MnlI CCTC 9 cut(s) 38, 128, 212, 464, 524, 563, 622, 787, 809
Mph1103I ATGCAT 1 cut(s) 772
MseI TTAA 5 cut(s) 144, 177, 276, 329, 450
MspA1I CMGCKG 1 cut(s) 880
MspCI CTTAAG 1 cut(s) 143
MspR9I CCNGG 2 cut(s) 227, 401
MvaI CCWGG 2 cut(s) 227, 401
MwoI GCNNNNNNNGC 4 cut(s) 106, 300, 371, 767
NdeII GATC 1 cut(s) 874
NlaIII CATG 4 cut(s) 577, 601, 770, 905
NsiI ATGCAT 1 cut(s) 772
NspI RCATGY 2 cut(s) 577, 770
PceI AGGCCT 1 cut(s) 260
PfeI GAWTC 2 cut(s) 112, 475
PkrI GCNGC 6 cut(s) 55, 76, 79, 305, 367, 882
Psp6I CCWGG 2 cut(s) 225, 399
PspFI CCCAGC 2 cut(s) 848, 854
PspGI CCWGG 2 cut(s) 225, 399
PstI CTGCAG 1 cut(s) 31
PstNI CAGNNNCTG 1 cut(s) 680
PvuII CAGCTG 1 cut(s) 880
RsaI GTAC 3 cut(s) 335, 578, 861
RsaNI GTAC 3 cut(s) 334, 577, 860
SaqAI TTAA 5 cut(s) 144, 177, 276, 329, 450
SatI GCNGC 6 cut(s) 54, 75, 78, 304, 366, 881
Sau3AI GATC 1 cut(s) 874
ScaI AGTACT 1 cut(s) 335
ScrFI CCNGG 2 cut(s) 227, 401
SetI ASST 9 cut(s) 102, 144, 154, 283, 402, 500, 535, 792, 882
SfaNI GCATC 2 cut(s) 421, 714
SfcI CTRYAG 1 cut(s) 27
SmlI CTYRAG 2 cut(s) 143, 791
SmoI CTYRAG 2 cut(s) 143, 791
Sse9I AATT 3 cut(s) 546, 634, 888
SseBI AGGCCT 1 cut(s) 260
SsiI CCGC 1 cut(s) 518
SspMI CTAG 4 cut(s) 422, 479, 645, 839
StuI AGGCCT 1 cut(s) 260
StyD4I CCNGG 2 cut(s) 225, 399
TaaI ACNGT 2 cut(s) 564, 676
TaqI TCGA 4 cut(s) 241, 529, 568, 746
TasI AATT 3 cut(s) 546, 634, 888
TatI WGTACW 2 cut(s) 333, 576
TfiI GAWTC 2 cut(s) 112, 475
Tru1I TTAA 5 cut(s) 144, 177, 276, 329, 450
Tru9I TTAA 5 cut(s) 144, 177, 276, 329, 450
TscAI CASTG 2 cut(s) 433, 567
TseI GCWGC 6 cut(s) 53, 74, 77, 303, 365, 880
TspDTI ATGAA 2 cut(s) 372, 614
TspRI CASTG 2 cut(s) 433, 567
Vha464I CTTAAG 1 cut(s) 143
XapI RAATTY 1 cut(s) 634
XbaI TCTAGA 1 cut(s) 478
XceI RCATGY 2 cut(s) 577, 770
XspI CTAG 4 cut(s) 422, 479, 645, 839
ZrmI AGTACT 1 cut(s) 335
Zsp2I ATGCAT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.