Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0009382

Physical Location & Seq

Genomic Coordinates Reverse (-)

29963806 .. 29966760

Gene Structure 2955 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1215900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCAACAAAGTCAGAGAAGTTTTCTCTGGATTTTGTGATGGGGGGAATGGCAGCCTTGGTGTCAAAGAGTGCAGCAGCACCCATTGAGAGAGTGAAGCTTCTCCTGCAGAATCAGGGAGAGATGATAAAAAGAGGGCAGATTAAGAGACCTTATAAGGGTGTTGGTGATTGCTTTACAAGGGTGTTTAGAGAGGAAGGCGTGTTGTCGTTTTGGCGAGGCAACCAGGCCAATGTTATTCGATATTTTCCTACTCAGGCCTTCAACTTTGCATTTAGAGGTTACTTCAAAAGCATCTTTGGCTGCTCAAAAGAGAAAGATGGATACATAAAGTGGTTTGCTGGAAATGTGGCTTCAGGAAGTGCTGCTGGAGCAACTACTTCATTATTTCTATATCATCTGGACTATGCACGTACGCGGCTAGGCACCGATGGGAGGGGGTCTGCAGTTAGTGGTCAACGCCAGTTCAGTGGGATTCTAGATGTTTACAGTAAAACCTTATCAAGCGATGGAATAGTTGGGCTCTATCGAGGATTTGGGGCTTCGATCATTGGAATTACGATGTATCGAGGAATGTACTTTGGGATTTATGACACCATGAAGCCTGTTGTTTTGGTTGGTCCTTTGGAGGGGAATTTTTTAGCTAGTTTTTTGCTTGGCTGGAGTGTAACAACAGTCTCTGGGGTCTGCGCCTATCCATTTGATACTGTTCGGCGGAGAATGATGCTAACATCAGGACAACCGTCAAAGTATCGTAACGCCTTGCATGCATTTCGGGAGATTGTTTACCTTGAGGGTTTCACAGCACTGTTTCGAGGAGTTACTGCAAATATGCTTCTAGGGGTCGCTGGAGCTGGGGTACTTGCAGGATATGATCAGCTGCAGCGAATTGCATATAAACGTGGTTTGTCCTTTGAGCCACAGCAAAGAGTTTTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000295 GO:0003006 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009791 GO:0009987 GO:0010154 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022414 GO:0022622 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0042175 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0098656 GO:0098827 GO:0099402 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

314

Amino Acids

34.52

Weight (kDa)

9.95

Isoelectric Point (pI)

21.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	6 - 101	8.4e-23	Mitochondrial carrier protein
Mito_carr	PF00153	113 - 203	1.1e-18	Mitochondrial carrier protein
Mito_carr	PF00153	212 - 300	3e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17400
fragaria_vesca	FvH4_5g13470
malus_domestica	MD06G1204800.v1.1 MD14G1215900.v1.1
prunus_persica	Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1
pyrus_communis	pycom06g18290 pycom14g17870
rosa_chinensis	RchiOBHm_Chr7g0183601
rosa_laevigata	RLG00000005038
rosa_multiflora	Rmu_sc0042401.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270370
rosa_rugosa	Rorug06G0458800
rosa_samantha	Rh7AG059900 Rh7BG059600 Rh7CG061600 Rh7DG060000
rosa_wichuraiana	Rw7G004920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AccB1I	GGYRCC	1 cut(s)	425
AccII	CGCG	1 cut(s)	418
AciI	CCGC	2 cut(s)	418, 715
AcsI	RAATTY	1 cut(s)	634
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	3 cut(s)	415, 578, 861
AfiI	CCNNNNNNNGG	3 cut(s)	158, 435, 629
AgsI	TTSAA	3 cut(s)	265, 289, 937
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	4 cut(s)	100, 644, 854, 880
AluI	AGCT	4 cut(s)	100, 644, 854, 880
Alw26I	GTCTC	2 cut(s)	142, 682
AlwNI	CAGNNNCTG	1 cut(s)	680
AoxI	GGCC	2 cut(s)	228, 258
ApeKI	GCWGC	7 cut(s)	53, 74, 77, 303, 365, 880, 883
ApoI	RAATTY	1 cut(s)	634
AspLEI	GCGC	1 cut(s)	692
AspS9I	GGNCC	1 cut(s)	620
AsuHPI	GGTGA	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	620
BanI	GGYRCC	1 cut(s)	425
BanII	GRGCYC	1 cut(s)	525
BbvI	GCAGC	7 cut(s)	65, 86, 89, 290, 352, 867, 895
BccI	CCATC	4 cut(s)	34, 314, 425, 503
BcgI	CGANNNNNNTGC	2 cut(s)	755, 789
BciT130I	CCWGG	1 cut(s)	227
BciVI	GTATCC	1 cut(s)	317
BclI	TGATCA	1 cut(s)	874
BcoDI	GTCTC	2 cut(s)	142, 682
BfaI	CTAG	4 cut(s)	422, 479, 645, 839
BfmI	CTRYAG	3 cut(s)	107, 444, 881
BfuI	GTATCC	1 cut(s)	317
BisI	GCNGC	8 cut(s)	54, 75, 78, 304, 366, 419, 881, 884
BlsI	GCNGC	8 cut(s)	55, 76, 79, 305, 367, 420, 882, 885
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	1 cut(s)	620
BmgT120I	GGNCC	1 cut(s)	620
BmiI	GGNNCC	1 cut(s)	427
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	2 cut(s)	303, 714
BoxI	GACNNNNGTC	1 cut(s)	742
BpmI	CTGGAG	3 cut(s)	390, 682, 870
BpuEI	CTTGAG	1 cut(s)	812
BsaAI	YACGTR	1 cut(s)	413
BsaI	GGTCTC	1 cut(s)	142
BsaJI	CCNNGG	1 cut(s)	57
BsaXI	ACNNNNNCTCC	2 cut(s)	843, 873
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 435, 629
Bse1I	ACTGG	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	57
BseLI	CCNNNNNNNGG	3 cut(s)	158, 435, 629
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	1 cut(s)	463
BseRI	GAGGAG	1 cut(s)	831
BseXI	GCAGC	7 cut(s)	65, 86, 89, 290, 352, 867, 895
BseYI	CCCAGC	1 cut(s)	854
BsgI	GTGCAG	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	418
BshFI	GGCC	2 cut(s)	230, 260
BshNI	GGYRCC	1 cut(s)	425
BsiWI	CGTACG	1 cut(s)	413
BslI	CCNNNNNNNGG	3 cut(s)	158, 435, 629
BsmAI	GTCTC	2 cut(s)	142, 682
BsnI	GGCC	2 cut(s)	230, 260
Bso31I	GGTCTC	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp143I	GATC	2 cut(s)	546, 874
BspACI	CCGC	2 cut(s)	418, 715
BspANI	GGCC	2 cut(s)	230, 260
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	427
BspMAI	CTGCAG	3 cut(s)	111, 448, 885
BspT107I	GGYRCC	1 cut(s)	425
BspTNI	GGTCTC	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	463
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	2 cut(s)	546, 874
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	5 cut(s)	491, 676, 709, 744, 810
BstBAI	YACGTR	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	768
BstDEI	CTNAG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	692
BstKTI	GATC	2 cut(s)	549, 877
BstMAI	GTCTC	2 cut(s)	142, 682
BstMBI	GATC	2 cut(s)	546, 874
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 300, 371, 767
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	770
BstPAI	GACNNNNGTC	1 cut(s)	742
BstSCI	CCNGG	1 cut(s)	225
BstSFI	CTRYAG	3 cut(s)	107, 444, 881
BstUI	CGCG	1 cut(s)	418
BstV1I	GCAGC	7 cut(s)	65, 86, 89, 290, 352, 867, 895
BstXI	CCANNNNNNTGG	1 cut(s)	470
BsuI	GTATCC	1 cut(s)	317
BsuRI	GGCC	2 cut(s)	230, 260
BtgZI	GCGATG	1 cut(s)	522
BtsIMutI	CAGTG	2 cut(s)	475, 806
Cac8I	GCNNGC	1 cut(s)	768
CaiI	CAGNNNCTG	1 cut(s)	680
CfoI	GCGC	1 cut(s)	692
Cfr13I	GGNCC	1 cut(s)	620
Csp6I	GTAC	3 cut(s)	414, 577, 860
CviAII	CATG	2 cut(s)	598, 767
CviQI	GTAC	3 cut(s)	414, 577, 860
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	2 cut(s)	548, 876
DpnII	GATC	2 cut(s)	546, 874
EciI	GGCGGA	1 cut(s)	730
Eco130I	CCWWGG	1 cut(s)	57
Eco147I	AGGCCT	1 cut(s)	260
Eco24I	GRGCYC	1 cut(s)	525
Eco31I	GGTCTC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	620
Eco57I	CTGAAG	1 cut(s)	339
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	57
EcoT22I	ATGCAT	1 cut(s)	772
EcoT38I	GRGCYC	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	2 cut(s)	601, 770
FatI	CATG	2 cut(s)	597, 766
FbaI	TGATCA	1 cut(s)	874
Fnu4HI	GCNGC	8 cut(s)	54, 75, 78, 304, 366, 419, 881, 884
FriOI	GRGCYC	1 cut(s)	525
Fsp4HI	GCNGC	8 cut(s)	54, 75, 78, 304, 366, 419, 881, 884
FspBI	CTAG	4 cut(s)	422, 479, 645, 839
GlaI	GCGC	1 cut(s)	691
GluI	GCNGC	8 cut(s)	54, 75, 78, 304, 366, 419, 881, 884
GsaI	CCCAGC	1 cut(s)	858
GsuI	CTGGAG	3 cut(s)	390, 682, 870
HaeIII	GGCC	2 cut(s)	230, 260
HhaI	GCGC	1 cut(s)	692
Hin1II	CATG	2 cut(s)	601, 770
Hin6I	GCGC	1 cut(s)	690
HinP1I	GCGC	1 cut(s)	690
HincII	GTYRAC	1 cut(s)	458
HindII	GTYRAC	1 cut(s)	458
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	2 cut(s)	112, 475
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	3 cut(s)	458, 487, 787
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	6 cut(s)	29, 357, 401, 479, 735, 776
Hpy8I	GTNNAC	3 cut(s)	458, 487, 787
HpyAV	CCTTC	2 cut(s)	191, 271
HpyCH4III	ACNGT	5 cut(s)	491, 676, 709, 744, 810
HpyCH4IV	ACGT	2 cut(s)	412, 901
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 300, 371, 767
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	2 cut(s)	412, 901
Hsp92II	CATG	2 cut(s)	601, 770
HspAI	GCGC	1 cut(s)	690
Ksp22I	TGATCA	1 cut(s)	874
Kzo9I	GATC	2 cut(s)	546, 874
LmnI	GCTCC	2 cut(s)	371, 851
Lsp1109I	GCAGC	7 cut(s)	65, 86, 89, 290, 352, 867, 895
LweI	GCATC	2 cut(s)	303, 714
MaeI	CTAG	4 cut(s)	422, 479, 645, 839
MaeII	ACGT	2 cut(s)	412, 901
MaeIII	GTNAC	4 cut(s)	281, 667, 755, 820
MalI	GATC	2 cut(s)	548, 876
MboI	GATC	2 cut(s)	546, 874
MhlI	GDGCHC	1 cut(s)	525
MluCI	AATT	3 cut(s)	555, 634, 888
Mph1103I	ATGCAT	1 cut(s)	772
MseI	TTAA	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	880
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
MvnI	CGCG	1 cut(s)	418
MwoI	GCNNNNNNNGC	4 cut(s)	106, 300, 371, 767
NdeII	GATC	2 cut(s)	546, 874
NlaIII	CATG	2 cut(s)	601, 770
NlaIV	GGNNCC	1 cut(s)	427
NsiI	ATGCAT	1 cut(s)	772
NspI	RCATGY	1 cut(s)	770
PaeI	GCATGC	1 cut(s)	770
PceI	AGGCCT	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	112, 475
Pfl23II	CGTACG	1 cut(s)	413
PkrI	GCNGC	8 cut(s)	55, 76, 79, 305, 367, 420, 882, 885
Ppu21I	YACGTR	1 cut(s)	413
PshAI	GACNNNNGTC	1 cut(s)	742
PsiI	TTATAA	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	225
PspFI	CCCAGC	1 cut(s)	854
PspGI	CCWGG	1 cut(s)	225
PspLI	CGTACG	1 cut(s)	413
PspN4I	GGNNCC	1 cut(s)	427
PspPI	GGNCC	1 cut(s)	620
PstI	CTGCAG	3 cut(s)	111, 448, 885
PstNI	CAGNNNCTG	1 cut(s)	680
PvuII	CAGCTG	1 cut(s)	880
RsaI	GTAC	3 cut(s)	415, 578, 861
RsaNI	GTAC	3 cut(s)	414, 577, 860
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	8 cut(s)	54, 75, 78, 304, 366, 419, 881, 884
Sau3AI	GATC	2 cut(s)	546, 874
Sau96I	GGNCC	1 cut(s)	620
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	525
SfaNI	GCATC	2 cut(s)	303, 714
SfcI	CTRYAG	3 cut(s)	107, 444, 881
SinI	GGWCC	1 cut(s)	620
SmlI	CTYRAG	1 cut(s)	791
SmoI	CTYRAG	1 cut(s)	791
SphI	GCATGC	1 cut(s)	770
Sse9I	AATT	3 cut(s)	555, 634, 888
SseBI	AGGCCT	1 cut(s)	260
SsiI	CCGC	2 cut(s)	418, 715
SspMI	CTAG	4 cut(s)	422, 479, 645, 839
StuI	AGGCCT	1 cut(s)	260
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	5 cut(s)	491, 676, 709, 744, 810
TaiI	ACGT	2 cut(s)	415, 904
TaqI	TCGA	5 cut(s)	241, 529, 545, 568, 814
TasI	AATT	3 cut(s)	555, 634, 888
TatI	WGTACW	1 cut(s)	576
TauI	GCSGC	1 cut(s)	421
TfiI	GAWTC	2 cut(s)	112, 475
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	2 cut(s)	475, 813
TseI	GCWGC	7 cut(s)	53, 74, 77, 303, 365, 880, 883
TspDTI	ATGAA	2 cut(s)	372, 614
TspRI	CASTG	2 cut(s)	475, 813
VpaK11BI	GGWCC	1 cut(s)	620
XapI	RAATTY	1 cut(s)	634
XbaI	TCTAGA	1 cut(s)	478
XceI	RCATGY	1 cut(s)	770
XspI	CTAG	4 cut(s)	422, 479, 645, 839
Zsp2I	ATGCAT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.