Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042401.1

Orthogroup ID

OG0009382

Physical Location & Seq

Genomic Coordinates Reverse (-)

45 .. 1440

Gene Structure 1396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042401.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atggggaaacaatccgagaagttttctgcagattttgtaatgggaggaatggctgcattggtagcaaagagcgccgctgcacctattgaaagggtaaagcttttgttgcagaatcaaggggagatgatgaagagaggacagcttaagaaaccttataagggtgttggtgatggatttaaaagggttttcagagaggaaggcgtgttggccttttggagaggcaaccaggccaatgttattcgatattttcctactcaggctttcaactttgcatttaaaggttacttcaaaagcatttttggccgctcaaaagagaaagatggatacataaagtggtttgctggaaatgtggcttcaggaagcgctgctggagcaacaacttcattatttctatatcatctggattatgcacgtacacggctaggcactgatgcaaggcatggtggagttaatggacgacaacaattcagagggcttctagatgtttactgtaaaaccttttcaagtgatggattagtgggtctctatcgaggttttggggtttccattattggaattacgctgtaccgaggcatgtactttgggatttatgacaccttgaagcctattgttttggttggacctttagaggtaaacatctccattctggaaaaagatgctacatattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000295 GO:0003006 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009791 GO:0009987 GO:0010154 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022414 GO:0022622 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0042175 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0098656 GO:0098827 GO:0099402 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

222

Amino Acids

24.6

Weight (kDa)

9.85

Isoelectric Point (pI)

18.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17400
fragaria_vesca	FvH4_5g13470
malus_domestica	MD06G1204800.v1.1 MD14G1215900.v1.1
prunus_persica	Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1
pyrus_communis	pycom06g18290 pycom14g17870
rosa_chinensis	RchiOBHm_Chr7g0183601
rosa_laevigata	RLG00000005038
rosa_multiflora	Rmu_sc0042401.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270370
rosa_rugosa	Rorug06G0458800
rosa_samantha	Rh7AG059900 Rh7BG059600 Rh7CG061600 Rh7DG060000
rosa_wichuraiana	Rw7G004920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AccBSI	CCGCTC	1 cut(s)	306
AciI	CCGC	2 cut(s)	75, 304
AcoI	YGGCCR	1 cut(s)	301
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	3 cut(s)	415, 566, 578
AfeI	AGCGCT	1 cut(s)	364
AfiI	CCNNNNNNNGG	1 cut(s)	158
AflII	CTTAAG	1 cut(s)	143
AgsI	TTSAA	5 cut(s)	89, 265, 289, 504, 601
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	2 cut(s)	100, 142
AluI	AGCT	2 cut(s)	100, 142
Alw26I	GTCTC	1 cut(s)	527
Aor51HI	AGCGCT	1 cut(s)	364
AoxI	GGCC	3 cut(s)	207, 228, 301
ApeKI	GCWGC	3 cut(s)	53, 77, 365
AspLEI	GCGC	2 cut(s)	74, 365
AspS9I	GGNCC	1 cut(s)	620
AsuHPI	GGTGA	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	620
BbvI	GCAGC	3 cut(s)	40, 64, 352
BccI	CCATC	3 cut(s)	164, 314, 503
BceAI	ACGGC	1 cut(s)	434
BciT130I	CCWGG	1 cut(s)	227
BciVI	GTATCC	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	527
BfaI	CTAG	2 cut(s)	422, 479
BfmI	CTRYAG	1 cut(s)	27
BfoI	RGCGCY	2 cut(s)	75, 366
BfrI	CTTAAG	1 cut(s)	143
BfuI	GTATCC	1 cut(s)	317
BisI	GCNGC	5 cut(s)	54, 75, 78, 304, 366
BlsI	GCNGC	5 cut(s)	55, 76, 79, 305, 367
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	1 cut(s)	620
BmgT120I	GGNCC	1 cut(s)	620
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	2 cut(s)	421, 646
BpmI	CTGGAG	1 cut(s)	390
BsaAI	YACGTR	1 cut(s)	413
BsaI	GGTCTC	1 cut(s)	527
BsaJI	CCNNGG	1 cut(s)	568
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	568
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	269
BseXI	GCAGC	3 cut(s)	40, 64, 352
BsgI	GTGCAG	1 cut(s)	63
BshFI	GGCC	3 cut(s)	209, 230, 303
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	527
BsnI	GGCC	3 cut(s)	209, 230, 303
Bso31I	GGTCTC	1 cut(s)	527
BspACI	CCGC	2 cut(s)	75, 304
BspANI	GGCC	3 cut(s)	209, 230, 303
BspCNI	CTCAG	1 cut(s)	268
BspMAI	CTGCAG	1 cut(s)	31
BspTI	CTTAAG	1 cut(s)	143
BspTNI	GGTCTC	1 cut(s)	527
BsrBI	CCGCTC	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	568
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	491
Bst6I	CTCTTC	1 cut(s)	125
BstAFI	CTTAAG	1 cut(s)	143
BstBAI	YACGTR	1 cut(s)	413
BstDEI	CTNAG	1 cut(s)	255
BstH2I	RGCGCY	2 cut(s)	75, 366
BstHHI	GCGC	2 cut(s)	74, 365
BstMAI	GTCTC	1 cut(s)	527
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 71, 106, 300, 371
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	577
BstSCI	CCNGG	1 cut(s)	225
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	3 cut(s)	40, 64, 352
BsuI	GTATCC	1 cut(s)	317
BsuRI	GGCC	3 cut(s)	209, 230, 303
BtsIMutI	CAGTG	1 cut(s)	426
CfoI	GCGC	2 cut(s)	74, 365
Cfr13I	GGNCC	1 cut(s)	620
Csp6I	GTAC	3 cut(s)	414, 565, 577
CviAII	CATG	2 cut(s)	440, 574
CviQI	GTAC	3 cut(s)	414, 565, 577
DdeI	CTNAG	1 cut(s)	255
DraI	TTTAAA	2 cut(s)	178, 277
EaeI	YGGCCR	1 cut(s)	301
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco31I	GGTCTC	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	620
Eco47III	AGCGCT	1 cut(s)	364
Eco57I	CTGAAG	1 cut(s)	339
EcoRII	CCWGG	1 cut(s)	225
FaeI	CATG	2 cut(s)	443, 577
FaiI	YATR	8 cut(s)	156, 329, 394, 408, 441, 575, 591, 664
FatI	CATG	2 cut(s)	439, 573
Fnu4HI	GCNGC	5 cut(s)	54, 75, 78, 304, 366
Fsp4HI	GCNGC	5 cut(s)	54, 75, 78, 304, 366
FspBI	CTAG	2 cut(s)	422, 479
GlaI	GCGC	2 cut(s)	73, 364
GluI	GCNGC	5 cut(s)	54, 75, 78, 304, 366
GsuI	CTGGAG	1 cut(s)	390
HaeII	RGCGCY	2 cut(s)	75, 366
HaeIII	GGCC	3 cut(s)	209, 230, 303
HhaI	GCGC	2 cut(s)	74, 365
Hin1II	CATG	2 cut(s)	443, 577
Hin6I	GCGC	2 cut(s)	72, 363
HinP1I	GCGC	2 cut(s)	72, 363
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	1 cut(s)	112
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	3 cut(s)	416, 487, 634
Hpy188I	TCNGA	3 cut(s)	16, 191, 470
Hpy188III	TCNNGA	4 cut(s)	357, 401, 479, 647
Hpy8I	GTNNAC	3 cut(s)	416, 487, 634
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	7 cut(s)	29, 56, 80, 109, 272, 410, 434
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 71, 106, 300, 371
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	412
Hsp92II	CATG	2 cut(s)	443, 577
HspAI	GCGC	2 cut(s)	72, 363
LmnI	GCTCC	1 cut(s)	371
LpnPI	CCDG	8 cut(s)	212, 239, 242, 327, 342, 354, 386, 632
Lsp1109I	GCAGC	3 cut(s)	40, 64, 352
LweI	GCATC	2 cut(s)	421, 646
MaeI	CTAG	2 cut(s)	422, 479
MaeII	ACGT	1 cut(s)	412
MaeIII	GTNAC	1 cut(s)	281
MbiI	CCGCTC	1 cut(s)	306
MboII	GAAGA	1 cut(s)	142
MluCI	AATT	2 cut(s)	464, 555
MmeI	TCCRAC	1 cut(s)	598
MnlI	CCTC	8 cut(s)	38, 128, 187, 212, 464, 524, 563, 622
MseI	TTAA	4 cut(s)	144, 177, 276, 450
MspA1I	CMGCKG	1 cut(s)	77
MspCI	CTTAAG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	5 cut(s)	62, 71, 106, 300, 371
NlaIII	CATG	2 cut(s)	443, 577
NspI	RCATGY	1 cut(s)	577
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	5 cut(s)	55, 76, 79, 305, 367
Ppu21I	YACGTR	1 cut(s)	413
PsiI	TTATAA	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	620
PstI	CTGCAG	1 cut(s)	31
RsaI	GTAC	3 cut(s)	415, 566, 578
RsaNI	GTAC	3 cut(s)	414, 565, 577
SaqAI	TTAA	4 cut(s)	144, 177, 276, 450
SatI	GCNGC	5 cut(s)	54, 75, 78, 304, 366
Sau96I	GGNCC	1 cut(s)	620
ScrFI	CCNGG	1 cut(s)	227
SfaNI	GCATC	2 cut(s)	421, 646
SfcI	CTRYAG	1 cut(s)	27
SinI	GGWCC	1 cut(s)	620
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	2 cut(s)	464, 555
SsiI	CCGC	2 cut(s)	75, 304
SspMI	CTAG	2 cut(s)	422, 479
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	491
TaiI	ACGT	1 cut(s)	415
TaqI	TCGA	2 cut(s)	241, 529
TasI	AATT	2 cut(s)	464, 555
TatI	WGTACW	1 cut(s)	576
TauI	GCSGC	2 cut(s)	77, 306
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	4 cut(s)	144, 177, 276, 450
Tru9I	TTAA	4 cut(s)	144, 177, 276, 450
TscAI	CASTG	1 cut(s)	433
TseI	GCWGC	3 cut(s)	53, 77, 365
TspDTI	ATGAA	2 cut(s)	143, 372
TspRI	CASTG	1 cut(s)	433
Vha464I	CTTAAG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	620
XbaI	TCTAGA	1 cut(s)	478
XceI	RCATGY	1 cut(s)	577
XspI	CTAG	2 cut(s)	422, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.