pycom06g18290

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0009382
Physical Location & Seq
Reverse (-)
22116840 .. 22119654
2815 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g18290.2

Sequence Viewer

Length: 1323 bp
ATGAGGATCCGGGGTTACGGTACAGGTTACGCCATTGAAGCAGGTTGGCCGGAGACGAACAGGCAGAACGCGCGAAGAAGTGTGTTCTTAATTAGTGTCCGGCCTCCACTACTCGCAGTCGTAGCACGTAATGCCCTGAGCTGCACAAGGAGTGTAAGTGCGGTTGCGGGTTCCGCCAGTGAAGCGAGTTGGCCGGAGACAAACAGGGGGAGAAAGAAGTGTGTTCTTAGTAGCAGCCCATTATCCGTCCCTAAAAGGGCAATCCCACCACGCCCACCCACCAACTCCACCATCTCTCTCCCTTCAATTTCTCTCCATAAATTTTCAAGGTATGGAAAATTGATTGGAAAAGAGAGAGAGAGAGAGAGAGAGAGCTTGGCAATGGCAACAAAGTCTGAGAAGTTTTCTGTGGATTTTGTGATGGGGGGAATGGCAGCATTGGTGTCAAAGAGTGCAGCAGCACCCATTGAGAGAGTGAAGCTTCTGCTCCAGAATCAGGGAGAGATGATAAAAAGAGGGCAGATTAAGAGACCTTATAAGGGTGTTGGTGATTGCTTTGCAAGGGTGTTCAGAGAGGAAGGTGTGTTGTCGTTTTGGCGAGGCAACCAGGCCAATGTCATTCGATATTTTCCTACTCAGGCTTTCAACTTTGCATTTAGAGGTTACTTCAAAAGCATCTTTGGCTGCTCAAAAGAGAAAGATGGGTACATAATGTGGTTTGCTGGAAATGTGGCTTCAGGAAGTGCTGCTGGAGCAACTACTTCATTATTTCTATATCATCTAGACTATGCCCGTACGCGGCTAGGCACCGATGGGAGGGGGTCTGCAGTTAGTGGTCAACACCAGTTCAGAGGGATTCTAGATGTTTACTGTAAAACCTTATCAAGTGATGGAATAGCGGGGCTCTATCGAGGTTTTGGGGCTTCAATTATTGGAATTACGATGTATCGAGGAATGTACTTTGGGATTTATGACACCATGAAGCCTATTGTTTTGGTTGGTCCTTTGGAGGGGAATTTTTTGGCTAGTTTTTTGCTTGGCTGGAGTGTTACAACAGTCTCTGGGGTCTGCGCCTATCCATTTGATACCATTCGGCGGAGAATGATGCTAACGTCAGGACAACCGTCAAAGTATCGCAATGCCTTGCATGCATTTCGGGAGATTGTTCACCTTGAGGGTTTCAAAGCACTGTTCCGAGGAGTAACTGCAAATATGCTTCTAGGAGTTGCCGGAGCTGGGGTACTTGCAGGATATGACCAGCTCCAGAGAGTTGCGTATAGAAAGGGTTATTTTATTGAGCCACATCAAAGAGTTCTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000295 GO:0003006 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009791 GO:0009987 GO:0010154 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022414 GO:0022622 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0042175 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0098656 GO:0098827 GO:0099402 GO:0099516 GO:1901264 GO:1901505 GO:1901679
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

441

Amino Acids

48.52

Weight (kDa)

10.22

Isoelectric Point (pI)

27.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 537
Acc36I ACCTGC 1 cut(s) 32
AccB1I GGYRCC 1 cut(s) 806
AccII CGCG 3 cut(s) 71, 73, 799
AciI CCGC 6 cut(s) 161, 167, 174, 799, 899, 1096
AclWI GGATC 1 cut(s) 14
AcoI YGGCCR 2 cut(s) 47, 191
AcsI RAATTY 2 cut(s) 320, 1015
AcuI CTGAAG 1 cut(s) 720
AfaI GTAC 5 cut(s) 22, 707, 796, 959, 1242
AfiI CCNNNNNNNGG 8 cut(s) 256, 496, 539, 798, 816, 1010, 1095, 1236
AgsI TTSAA 7 cut(s) 38, 306, 327, 646, 670, 927, 1183
AjnI CCWGG 1 cut(s) 606
AluBI AGCT 5 cut(s) 141, 375, 481, 1235, 1261
AluI AGCT 5 cut(s) 141, 375, 481, 1235, 1261
Alw26I GTCTC 4 cut(s) 47, 191, 523, 1063
AlwI GGATC 1 cut(s) 14
AlwNI CAGNNNCTG 1 cut(s) 1061
AoxI GGCC 4 cut(s) 47, 101, 191, 609
ApeKI GCWGC 7 cut(s) 141, 234, 434, 455, 458, 684, 746
ApoI RAATTY 2 cut(s) 320, 1015
AspLEI GCGC 2 cut(s) 73, 1073
AspS9I GGNCC 1 cut(s) 1001
AsuC2I CCSGG 1 cut(s) 11
AsuHPI GGTGA 2 cut(s) 560, 1160
AvaII GGWCC 1 cut(s) 1001
BamHI GGATCC 1 cut(s) 6
BanI GGYRCC 1 cut(s) 806
BanII GRGCYC 1 cut(s) 906
BbvI GCAGC 7 cut(s) 128, 246, 446, 467, 470, 671, 733
BccI CCATC 5 cut(s) 299, 415, 695, 806, 884
BcgI CGANNNNNNTGC 2 cut(s) 1136, 1170
BciT130I CCWGG 1 cut(s) 608
BcnI CCSGG 1 cut(s) 11
BcoDI GTCTC 4 cut(s) 47, 191, 523, 1063
BfaI CTAG 5 cut(s) 782, 803, 860, 1026, 1220
BfmI CTRYAG 1 cut(s) 825
BfuAI ACCTGC 1 cut(s) 32
BisI GCNGC 8 cut(s) 142, 235, 435, 456, 459, 685, 747, 800
BlsI GCNGC 8 cut(s) 143, 236, 436, 457, 460, 686, 748, 801
Bme1390I CCNGG 2 cut(s) 11, 608
Bme18I GGWCC 1 cut(s) 1001
BmgT120I GGNCC 1 cut(s) 1001
BmiI GGNNCC 3 cut(s) 8, 172, 808
BmrFI CCNGG 2 cut(s) 11, 608
BmsI GCATC 2 cut(s) 684, 1095
BoxI GACNNNNGTC 1 cut(s) 1123
BpmI CTGGAG 4 cut(s) 473, 771, 1063, 1247
Bpu10I CCTNAGC 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 1193
BpuMI CCSGG 1 cut(s) 11
BsaAI YACGTR 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 523
BsaJI CCNNGG 2 cut(s) 10, 1195
BsaXI ACNNNNNCTCC 4 cut(s) 142, 172, 1224, 1254
Bsc4I CCNNNNNNNGG 8 cut(s) 256, 496, 539, 798, 816, 1010, 1095, 1236
Bse1I ACTGG 2 cut(s) 177, 844
Bse3DI GCAATG 2 cut(s) 387, 1144
BseBI CCWGG 1 cut(s) 608
BseDI CCNNGG 2 cut(s) 10, 1195
BseLI CCNNNNNNNGG 8 cut(s) 256, 496, 539, 798, 816, 1010, 1095, 1236
BseMI GCAATG 2 cut(s) 387, 1144
BseMII CTCAG 3 cut(s) 128, 387, 650
BseNI ACTGG 2 cut(s) 177, 844
BseRI GAGGAG 1 cut(s) 1212
BseXI GCAGC 7 cut(s) 128, 246, 446, 467, 470, 671, 733
BseYI CCCAGC 1 cut(s) 1235
BsgI GTGCAG 2 cut(s) 127, 474
Bsh1236I CGCG 3 cut(s) 71, 73, 799
BshFI GGCC 4 cut(s) 49, 103, 193, 611
BshNI GGYRCC 1 cut(s) 806
BsiSI CCGG 5 cut(s) 10, 50, 100, 194, 1230
BsiWI CGTACG 1 cut(s) 794
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 8 cut(s) 256, 496, 539, 798, 816, 1010, 1095, 1236
BsmAI GTCTC 4 cut(s) 47, 191, 523, 1063
BsmBI CGTCTC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 233
BsnI GGCC 4 cut(s) 49, 103, 193, 611
Bso31I GGTCTC 1 cut(s) 523
Bsp1286I GDGCHC 1 cut(s) 906
Bsp143I GATC 1 cut(s) 6
BspACI CCGC 6 cut(s) 161, 167, 174, 799, 899, 1096
BspANI GGCC 4 cut(s) 49, 103, 193, 611
BspCNI CTCAG 3 cut(s) 129, 388, 649
BspFNI CGCG 3 cut(s) 71, 73, 799
BspLI GGNNCC 3 cut(s) 8, 172, 808
BspMAI CTGCAG 1 cut(s) 829
BspMI ACCTGC 1 cut(s) 32
BspPI GGATC 1 cut(s) 14
BspT107I GGYRCC 1 cut(s) 806
BspTNI GGTCTC 1 cut(s) 523
BsrDI GCAATG 2 cut(s) 387, 1144
BsrI ACTGG 2 cut(s) 177, 844
BssECI CCNNGG 2 cut(s) 10, 1195
BssMI GATC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 608
Bst4CI ACNGT 5 cut(s) 20, 872, 1057, 1125, 1191
BstAPI GCANNNNNTGC 1 cut(s) 131
BstBAI YACGTR 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 1149
BstDEI CTNAG 4 cut(s) 137, 227, 396, 636
BstFNI CGCG 3 cut(s) 71, 73, 799
BstHHI GCGC 2 cut(s) 73, 1073
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 4 cut(s) 47, 191, 523, 1063
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 9 cut(s) 38, 70, 122, 131, 173, 182, 681, 752, 1148
BstNI CCWGG 1 cut(s) 608
BstNSI RCATGY 1 cut(s) 1151
BstPAI GACNNNNGTC 1 cut(s) 1123
BstSCI CCNGG 2 cut(s) 9, 606
BstSFI CTRYAG 1 cut(s) 825
BstUI CGCG 3 cut(s) 71, 73, 799
BstV1I GCAGC 7 cut(s) 128, 246, 446, 467, 470, 671, 733
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BsuRI GGCC 4 cut(s) 49, 103, 193, 611
BtsIMutI CAGTG 2 cut(s) 184, 1187
BveI ACCTGC 1 cut(s) 32
Cac8I GCNNGC 1 cut(s) 1149
CaiI CAGNNNCTG 1 cut(s) 1061
CfoI GCGC 2 cut(s) 73, 1073
Cfr13I GGNCC 1 cut(s) 1001
Csp6I GTAC 5 cut(s) 21, 706, 795, 958, 1241
CviAII CATG 2 cut(s) 979, 1148
CviQI GTAC 5 cut(s) 21, 706, 795, 958, 1241
DdeI CTNAG 4 cut(s) 137, 227, 396, 636
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
EaeI YGGCCR 2 cut(s) 47, 191
EciI GGCGGA 2 cut(s) 163, 1111
Eco24I GRGCYC 1 cut(s) 906
Eco31I GGTCTC 1 cut(s) 523
Eco47I GGWCC 1 cut(s) 1001
Eco57I CTGAAG 1 cut(s) 720
EcoRII CCWGG 1 cut(s) 606
EcoT22I ATGCAT 1 cut(s) 1153
EcoT38I GRGCYC 1 cut(s) 906
Esp3I CGTCTC 1 cut(s) 47
FaeI CATG 2 cut(s) 982, 1151
FaqI GGGAC 1 cut(s) 233
FatI CATG 2 cut(s) 978, 1147
FauI CCCGC 2 cut(s) 160, 892
Fnu4HI GCNGC 8 cut(s) 142, 235, 435, 456, 459, 685, 747, 800
FriOI GRGCYC 1 cut(s) 906
Fsp4HI GCNGC 8 cut(s) 142, 235, 435, 456, 459, 685, 747, 800
FspBI CTAG 5 cut(s) 782, 803, 860, 1026, 1220
GlaI GCGC 2 cut(s) 72, 1072
GluI GCNGC 8 cut(s) 142, 235, 435, 456, 459, 685, 747, 800
GsaI CCCAGC 1 cut(s) 1239
GsuI CTGGAG 4 cut(s) 473, 771, 1063, 1247
HaeIII GGCC 4 cut(s) 49, 103, 193, 611
HapII CCGG 5 cut(s) 10, 50, 100, 194, 1230
HhaI GCGC 2 cut(s) 73, 1073
Hin1II CATG 2 cut(s) 982, 1151
Hin6I GCGC 2 cut(s) 71, 1071
HinP1I GCGC 2 cut(s) 71, 1071
HincII GTYRAC 1 cut(s) 839
HindII GTYRAC 1 cut(s) 839
HindIII AAGCTT 1 cut(s) 479
HinfI GANTC 2 cut(s) 493, 856
HpaII CCGG 5 cut(s) 10, 50, 100, 194, 1230
HphI GGTGA 2 cut(s) 560, 1160
Hpy166II GTNNAC 3 cut(s) 839, 868, 1168
Hpy188I TCNGA 5 cut(s) 397, 572, 851, 1196, 1317
Hpy188III TCNNGA 7 cut(s) 490, 738, 782, 860, 1116, 1157, 1264
Hpy8I GTNNAC 3 cut(s) 839, 868, 1168
HpyAV CCTTC 2 cut(s) 312, 572
HpyCH4III ACNGT 5 cut(s) 20, 872, 1057, 1125, 1191
HpyCH4IV ACGT 2 cut(s) 127, 1112
HpyCH4V TGCA 9 cut(s) 144, 455, 560, 653, 827, 1147, 1151, 1208, 1247
HpyF10VI GCNNNNNNNGC 9 cut(s) 38, 70, 122, 131, 173, 182, 681, 752, 1148
HpyF3I CTNAG 4 cut(s) 137, 227, 396, 636
HpySE526I ACGT 2 cut(s) 127, 1112
Hsp92II CATG 2 cut(s) 982, 1151
HspAI GCGC 2 cut(s) 71, 1071
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 4 cut(s) 492, 752, 1232, 1266
Lsp1109I GCAGC 7 cut(s) 128, 246, 446, 467, 470, 671, 733
LweI GCATC 2 cut(s) 684, 1095
MaeI CTAG 5 cut(s) 782, 803, 860, 1026, 1220
MaeII ACGT 2 cut(s) 127, 1112
MaeIII GTNAC 5 cut(s) 14, 26, 662, 1048, 1201
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 1 cut(s) 87
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 906
MluCI AATT 7 cut(s) 90, 306, 320, 338, 927, 936, 1015
Mph1103I ATGCAT 1 cut(s) 1153
MseI TTAA 2 cut(s) 89, 525
MspI CCGG 5 cut(s) 10, 50, 100, 194, 1230
MspR9I CCNGG 2 cut(s) 11, 608
MvaI CCWGG 1 cut(s) 608
MvnI CGCG 3 cut(s) 71, 73, 799
MwoI GCNNNNNNNGC 9 cut(s) 38, 70, 122, 131, 173, 182, 681, 752, 1148
NciI CCSGG 1 cut(s) 11
NdeII GATC 1 cut(s) 6
NlaIII CATG 2 cut(s) 982, 1151
NlaIV GGNNCC 3 cut(s) 8, 172, 808
NsiI ATGCAT 1 cut(s) 1153
NspI RCATGY 1 cut(s) 1151
PaeI GCATGC 1 cut(s) 1151
PfeI GAWTC 2 cut(s) 493, 856
Pfl23II CGTACG 1 cut(s) 794
PkrI GCNGC 8 cut(s) 143, 236, 436, 457, 460, 686, 748, 801
Ppu21I YACGTR 1 cut(s) 128
PshAI GACNNNNGTC 1 cut(s) 1123
PsiI TTATAA 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 606
PspFI CCCAGC 1 cut(s) 1235
PspGI CCWGG 1 cut(s) 606
PspLI CGTACG 1 cut(s) 794
PspN4I GGNNCC 3 cut(s) 8, 172, 808
PspPI GGNCC 1 cut(s) 1001
PstI CTGCAG 1 cut(s) 829
PstNI CAGNNNCTG 1 cut(s) 1061
PsuI RGATCY 1 cut(s) 6
RsaI GTAC 5 cut(s) 22, 707, 796, 959, 1242
RsaNI GTAC 5 cut(s) 21, 706, 795, 958, 1241
SaqAI TTAA 2 cut(s) 89, 525
SatI GCNGC 8 cut(s) 142, 235, 435, 456, 459, 685, 747, 800
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 1001
ScrFI CCNGG 2 cut(s) 11, 608
SduI GDGCHC 1 cut(s) 906
SfaNI GCATC 2 cut(s) 684, 1095
SfcI CTRYAG 1 cut(s) 825
SinI GGWCC 1 cut(s) 1001
SmlI CTYRAG 1 cut(s) 1172
SmoI CTYRAG 1 cut(s) 1172
SphI GCATGC 1 cut(s) 1151
Sse9I AATT 7 cut(s) 90, 306, 320, 338, 927, 936, 1015
SsiI CCGC 6 cut(s) 161, 167, 174, 799, 899, 1096
SspMI CTAG 5 cut(s) 782, 803, 860, 1026, 1220
StyD4I CCNGG 2 cut(s) 9, 606
TaaI ACNGT 5 cut(s) 20, 872, 1057, 1125, 1191
TaiI ACGT 2 cut(s) 130, 1115
TaqI TCGA 3 cut(s) 622, 910, 949
TasI AATT 7 cut(s) 90, 306, 320, 338, 927, 936, 1015
TatI WGTACW 1 cut(s) 957
TauI GCSGC 1 cut(s) 802
TfiI GAWTC 2 cut(s) 493, 856
Tru1I TTAA 2 cut(s) 89, 525
Tru9I TTAA 2 cut(s) 89, 525
TscAI CASTG 2 cut(s) 184, 1194
TseI GCWGC 7 cut(s) 141, 234, 434, 455, 458, 684, 746
TspDTI ATGAA 2 cut(s) 753, 995
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 2 cut(s) 184, 1194
VpaK11BI GGWCC 1 cut(s) 1001
XapI RAATTY 2 cut(s) 320, 1015
XbaI TCTAGA 2 cut(s) 781, 859
XceI RCATGY 1 cut(s) 1151
XspI CTAG 5 cut(s) 782, 803, 860, 1026, 1220
Zsp2I ATGCAT 1 cut(s) 1153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.