Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009382

Physical Location & Seq

Genomic Coordinates Forward (+)

64512986 .. 64514716

Gene Structure 1731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005038

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGGGATGGGGAAACAATCCGAGAAGTTTTCTGCGGACTTTGTAATGGGAGGAATGGCTGCATTGGTAGCAAAGAGCGCCGCTGCACCTATTGAAAGAGTAAAGCTTTTGTTGCAGAATCAAGGGGAGATGATGAAGAGAGGACAGCTTAAGAAACCTTATAAGGGTGTTGGTGATGGATTTAAAAGGGTTTTAAGAGAGGAAGGCGTGTTGGCCTTTTGGAGAGGCAACCAGGCCAATGTTATTCGATATTTTCCTACTCAGGCTTTCAACTTTGCATTTAAAGGTTACTTCAAAAGCATTTTTGGCCGCTCAAAAGAGAAAGATGGATACATAAAGTGGTTTGCTGGAAATGTGGCTTCAGGAAGTGCTGCTGGAGCAACAACTTCATTATTTCTATATCATCTGGATTATGCACGTACACGGCTAGGCACTGATGCAAGGCATGGTGGAGTTAATGGACAACAACAATTCAGAGGGCTTCTAGATGTTTACCGTAAAACCTTGTCAAGTGATGGATTAGTGGGTCTCTATCGAGGTTTTGGGGTTTCCATTATTGGAATTACGCTGTACCGAGGCATGTACTTTGGGATTTATGACACCTTGAAGCCTATTGTTTTGGTTGGACCTTTAGAGGGAAATTTTTTGGCTAGTTTCTTTCTTGGTTGGAGTGTCACAACAGTCTCCGGGATCTGTGCCTATCCATTTGATACTCTTCGGAGGAGAATGATGTTAACCTCAGGACACGCCACAAAGTATCGCAATGGCTTACATGCATTTCGGGAGATTGTTTACCTTGAGGGTTTCACAGCACTGTTCCGAGGAGTTACTGCAAATATGCTTGTTGGAGTTGCTGGGGCTGGTGTACTTGCAGGATATGATCAGCTGCAACGACTTGCATATAAACATGGTTATTCTGTTGAGCCAAATCAAAGAGTTGCGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000295 GO:0003006 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009791 GO:0009987 GO:0010154 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022414 GO:0022622 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0042175 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0098656 GO:0098827 GO:0099402 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

316

Amino Acids

34.76

Weight (kDa)

10.04

Isoelectric Point (pI)

17.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	8 - 105	1.1e-23	Mitochondrial carrier protein
Mito_carr	PF00153	115 - 205	4.2e-18	Mitochondrial carrier protein
Mito_carr	PF00153	214 - 302	3.6e-17	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17400
fragaria_vesca	FvH4_5g13470
malus_domestica	MD06G1204800.v1.1 MD14G1215900.v1.1
prunus_persica	Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1
pyrus_communis	pycom06g18290 pycom14g17870
rosa_chinensis	RchiOBHm_Chr7g0183601
rosa_laevigata	RLG00000005038
rosa_multiflora	Rmu_sc0042401.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270370
rosa_rugosa	Rorug06G0458800
rosa_samantha	Rh7AG059900 Rh7BG059600 Rh7CG061600 Rh7DG060000
rosa_wichuraiana	Rw7G004920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	162
AccBSI	CCGCTC	1 cut(s)	312
AciI	CCGC	3 cut(s)	35, 81, 310
AclWI	GGATC	1 cut(s)	698
AcoI	YGGCCR	1 cut(s)	307
AcsI	RAATTY	1 cut(s)	640
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	4 cut(s)	421, 572, 584, 867
AfiI	CCNNNNNNNGG	2 cut(s)	164, 635
AflII	CTTAAG	1 cut(s)	149
AgsI	TTSAA	4 cut(s)	95, 271, 295, 607
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	3 cut(s)	106, 148, 886
AluI	AGCT	3 cut(s)	106, 148, 886
Alw26I	GTCTC	2 cut(s)	533, 688
AlwI	GGATC	1 cut(s)	698
AoxI	GGCC	3 cut(s)	213, 234, 307
ApeKI	GCWGC	4 cut(s)	59, 83, 371, 886
ApoI	RAATTY	1 cut(s)	640
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	626
AsuC2I	CCSGG	1 cut(s)	688
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	626
AxyI	CCTNAGG	1 cut(s)	739
BbvI	GCAGC	4 cut(s)	46, 70, 358, 873
BccI	CCATC	3 cut(s)	170, 320, 509
BceAI	ACGGC	1 cut(s)	440
BciT130I	CCWGG	1 cut(s)	233
BciVI	GTATCC	1 cut(s)	323
BclI	TGATCA	1 cut(s)	880
BcnI	CCSGG	1 cut(s)	688
BcoDI	GTCTC	2 cut(s)	533, 688
BfaI	CTAG	3 cut(s)	428, 485, 651
BfoI	RGCGCY	1 cut(s)	81
BfrI	CTTAAG	1 cut(s)	149
BfuI	GTATCC	1 cut(s)	323
BisI	GCNGC	6 cut(s)	60, 81, 84, 310, 372, 887
BlsI	GCNGC	6 cut(s)	61, 82, 85, 311, 373, 888
Bme1390I	CCNGG	2 cut(s)	233, 688
Bme18I	GGWCC	1 cut(s)	626
BmgT120I	GGNCC	1 cut(s)	626
BmrFI	CCNGG	2 cut(s)	233, 688
BmsI	GCATC	1 cut(s)	427
BpmI	CTGGAG	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	818
BpuMI	CCSGG	1 cut(s)	688
BsaAI	YACGTR	1 cut(s)	419
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	2 cut(s)	574, 820
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 635
Bse21I	CCTNAGG	1 cut(s)	739
Bse3DI	GCAATG	1 cut(s)	769
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	574, 820
BseGI	GGATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	2 cut(s)	164, 635
BseMI	GCAATG	1 cut(s)	769
BseMII	CTCAG	2 cut(s)	275, 753
BseRI	GAGGAG	2 cut(s)	736, 837
BseXI	GCAGC	4 cut(s)	46, 70, 358, 873
BseYI	CCCAGC	1 cut(s)	854
BsgI	GTGCAG	1 cut(s)	69
BshFI	GGCC	3 cut(s)	215, 236, 309
BsiSI	CCGG	1 cut(s)	687
BslI	CCNNNNNNNGG	2 cut(s)	164, 635
BsmAI	GTCTC	2 cut(s)	533, 688
BsnI	GGCC	3 cut(s)	215, 236, 309
Bso31I	GGTCTC	1 cut(s)	533
Bsp143I	GATC	2 cut(s)	690, 880
BspACI	CCGC	3 cut(s)	35, 81, 310
BspANI	GGCC	3 cut(s)	215, 236, 309
BspCNI	CTCAG	2 cut(s)	274, 752
BspPI	GGATC	1 cut(s)	698
BspTI	CTTAAG	1 cut(s)	149
BspTNI	GGTCTC	1 cut(s)	533
BsrBI	CCGCTC	1 cut(s)	312
BsrDI	GCAATG	1 cut(s)	769
BssECI	CCNNGG	2 cut(s)	574, 820
BssMI	GATC	2 cut(s)	690, 880
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	3 cut(s)	497, 682, 816
Bst6I	CTCTTC	2 cut(s)	131, 720
BstAFI	CTTAAG	1 cut(s)	149
BstBAI	YACGTR	1 cut(s)	419
BstDEI	CTNAG	2 cut(s)	261, 739
BstF5I	GGATG	1 cut(s)	12
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	2 cut(s)	693, 883
BstMAI	GTCTC	2 cut(s)	533, 688
BstMBI	GATC	2 cut(s)	690, 880
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 77, 112, 306, 377
BstNI	CCWGG	1 cut(s)	233
BstNSI	RCATGY	2 cut(s)	583, 776
BstSCI	CCNGG	2 cut(s)	231, 686
BstV1I	GCAGC	4 cut(s)	46, 70, 358, 873
BstX2I	RGATCY	1 cut(s)	690
BstYI	RGATCY	1 cut(s)	690
Bsu36I	CCTNAGG	1 cut(s)	739
BsuI	GTATCC	1 cut(s)	323
BsuRI	GGCC	3 cut(s)	215, 236, 309
BtsCI	GGATG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	432, 812
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	626
Csp6I	GTAC	4 cut(s)	420, 571, 583, 866
CviAII	CATG	4 cut(s)	446, 580, 773, 908
CviQI	GTAC	4 cut(s)	420, 571, 583, 866
DdeI	CTNAG	2 cut(s)	261, 739
DpnI	GATC	2 cut(s)	692, 882
DpnII	GATC	2 cut(s)	690, 880
DraI	TTTAAA	2 cut(s)	184, 283
EaeI	YGGCCR	1 cut(s)	307
Eam1104I	CTCTTC	2 cut(s)	131, 720
EarI	CTCTTC	2 cut(s)	131, 720
Eco31I	GGTCTC	1 cut(s)	533
Eco47I	GGWCC	1 cut(s)	626
Eco57I	CTGAAG	1 cut(s)	345
Eco81I	CCTNAGG	1 cut(s)	739
EcoRII	CCWGG	1 cut(s)	231
EcoT22I	ATGCAT	1 cut(s)	778
FaeI	CATG	4 cut(s)	449, 583, 776, 911
FatI	CATG	4 cut(s)	445, 579, 772, 907
FbaI	TGATCA	1 cut(s)	880
Fnu4HI	GCNGC	6 cut(s)	60, 81, 84, 310, 372, 887
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	6 cut(s)	60, 81, 84, 310, 372, 887
FspBI	CTAG	3 cut(s)	428, 485, 651
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	6 cut(s)	60, 81, 84, 310, 372, 887
GsaI	CCCAGC	1 cut(s)	858
GsuI	CTGGAG	1 cut(s)	396
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	3 cut(s)	215, 236, 309
HapII	CCGG	1 cut(s)	687
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	4 cut(s)	449, 583, 776, 911
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	735
HindII	GTYRAC	1 cut(s)	735
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	1 cut(s)	118
HpaI	GTTAAC	1 cut(s)	735
HpaII	CCGG	1 cut(s)	687
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	5 cut(s)	422, 493, 735, 793, 866
Hpy188I	TCNGA	4 cut(s)	22, 476, 720, 821
Hpy188III	TCNNGA	5 cut(s)	363, 407, 485, 741, 782
Hpy8I	GTNNAC	5 cut(s)	422, 493, 735, 793, 866
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	3 cut(s)	497, 682, 816
HpyCH4IV	ACGT	1 cut(s)	418
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 77, 112, 306, 377
HpyF3I	CTNAG	2 cut(s)	261, 739
HpySE526I	ACGT	1 cut(s)	418
Hsp92II	CATG	4 cut(s)	449, 583, 776, 911
HspAI	GCGC	1 cut(s)	78
Ksp22I	TGATCA	1 cut(s)	880
KspAI	GTTAAC	1 cut(s)	735
Kzo9I	GATC	2 cut(s)	690, 880
LmnI	GCTCC	1 cut(s)	377
Lsp1109I	GCAGC	4 cut(s)	46, 70, 358, 873
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	3 cut(s)	428, 485, 651
MaeII	ACGT	1 cut(s)	418
MaeIII	GTNAC	3 cut(s)	287, 673, 826
MalI	GATC	2 cut(s)	692, 882
MbiI	CCGCTC	1 cut(s)	312
MboI	GATC	2 cut(s)	690, 880
MboII	GAAGA	2 cut(s)	148, 707
MflI	RGATCY	1 cut(s)	690
MluCI	AATT	3 cut(s)	470, 561, 640
MmeI	TCCRAC	3 cut(s)	604, 647, 826
Mph1103I	ATGCAT	1 cut(s)	778
MseI	TTAA	6 cut(s)	150, 183, 194, 282, 456, 734
MspA1I	CMGCKG	2 cut(s)	83, 886
MspCI	CTTAAG	1 cut(s)	149
MspI	CCGG	1 cut(s)	687
MspR9I	CCNGG	2 cut(s)	233, 688
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	5 cut(s)	68, 77, 112, 306, 377
NciI	CCSGG	1 cut(s)	688
NdeII	GATC	2 cut(s)	690, 880
NlaIII	CATG	4 cut(s)	449, 583, 776, 911
NmuCI	GTSAC	1 cut(s)	673
NsiI	ATGCAT	1 cut(s)	778
NspI	RCATGY	2 cut(s)	583, 776
PfeI	GAWTC	1 cut(s)	118
PfoI	TCCNGGA	1 cut(s)	686
PkrI	GCNGC	6 cut(s)	61, 82, 85, 311, 373, 888
Ppu21I	YACGTR	1 cut(s)	419
PsiI	TTATAA	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	231
PspFI	CCCAGC	1 cut(s)	854
PspGI	CCWGG	1 cut(s)	231
PspPI	GGNCC	1 cut(s)	626
PsuI	RGATCY	1 cut(s)	690
PvuII	CAGCTG	1 cut(s)	886
RsaI	GTAC	4 cut(s)	421, 572, 584, 867
RsaNI	GTAC	4 cut(s)	420, 571, 583, 866
SaqAI	TTAA	6 cut(s)	150, 183, 194, 282, 456, 734
SatI	GCNGC	6 cut(s)	60, 81, 84, 310, 372, 887
Sau3AI	GATC	2 cut(s)	690, 880
Sau96I	GGNCC	1 cut(s)	626
ScrFI	CCNGG	2 cut(s)	233, 688
SfaNI	GCATC	1 cut(s)	427
SinI	GGWCC	1 cut(s)	626
SmlI	CTYRAG	2 cut(s)	149, 797
SmoI	CTYRAG	2 cut(s)	149, 797
Sse9I	AATT	3 cut(s)	470, 561, 640
SsiI	CCGC	3 cut(s)	35, 81, 310
SspMI	CTAG	3 cut(s)	428, 485, 651
StyD4I	CCNGG	2 cut(s)	231, 686
TaaI	ACNGT	3 cut(s)	497, 682, 816
TaiI	ACGT	1 cut(s)	421
TaqI	TCGA	2 cut(s)	247, 535
TasI	AATT	3 cut(s)	470, 561, 640
TatI	WGTACW	2 cut(s)	582, 865
TauI	GCSGC	2 cut(s)	83, 312
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	6 cut(s)	150, 183, 194, 282, 456, 734
Tru9I	TTAA	6 cut(s)	150, 183, 194, 282, 456, 734
TscAI	CASTG	2 cut(s)	439, 819
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	4 cut(s)	59, 83, 371, 886
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	2 cut(s)	149, 378
TspRI	CASTG	2 cut(s)	439, 819
Vha464I	CTTAAG	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	626
XapI	RAATTY	1 cut(s)	640
XbaI	TCTAGA	1 cut(s)	484
XceI	RCATGY	2 cut(s)	583, 776
XspI	CTAG	3 cut(s)	428, 485, 651
Zsp2I	ATGCAT	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.