Rw7G004920

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0009382
Physical Location & Seq
Reverse (-)
4118972 .. 4122196
3225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G004920.1

Sequence Viewer

Length: 942 bp
ATGGGGAAACAATCCGAGAAGTTTTCTGCGGATTTTGTAATGGGAGGAATGGCTGCATTGGTAGCAAAGAGCGCCGCTGCACCTATTGAAAGAGTAAAGCTTTTGTTGCAGAATCAAGGGGAGATGATGAAGAGAGGACAGCTTAAGAAACCTTATAAGGGTGTTGGTGATGGATTTAAAAGGGTTTTCAGAGAGGAAGGCGTGTTGGCCTTTTGGAGAGGCAACCAGGCCAATGTTATTCGATATTTTCCTACTCAGGCTTTCAACTTTGCATTTAAAGGTTACTTCAAAAGCATTTTTGGCCGCTCAAAAGAGAAAGATGGATACATAAAGTGGTTTGCTGGAAATGTGGCTTCAGGAAGCGCTGCTGGAGCAACAACTTCATTATTTCTATATCATCTGGATTATGCACGTACACGGCTAGGCACTGATGCAAGGCATGTTGGAGTTAATGGACGACAACAATTCAGAGGGCTTCTAGATGTTTACTGTAAAACCTTGTCAAGTGATGGATTAGTGGGTCTCTATCGAGGTTTTGGGGTTTCCATTATTGGAATTACGCTGTACCGAGGCATGTACTTTGGGATTTATGACACCTTGAAGCCTATTGTTTTGGTTGGACCTTTAGAGGGAAATTTTTTGGCTAGTTTCTTTCTTGGTTGGAGTGTCACAACAGTCTCCGGGATCTGTGCCTATCCATTTGATACTCTTCGGAGGAGAATGATGTTAACCTCAGGACATGCCATAAAGTATCGCAATGGCTTACATGCATTTCGGGAGATTGTTTACCTTGAGGGTTTCAAAGCACTGTTCCGAGGAGTTACTGCAAATATGCTTGTCGGAGTTGCTGGGGCTGGTGTACTTGCAGGATATGATCAGCTGCAACGACTTGCATATAAACATGGTTATTCTGTTGAGCCAAATCAAAGAGTTGCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000295 GO:0003006 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009791 GO:0009987 GO:0010154 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022414 GO:0022622 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0042175 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0098656 GO:0098827 GO:0099402 GO:0099516 GO:1901264 GO:1901505 GO:1901679
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

313

Amino Acids

34.66

Weight (kDa)

10.02

Isoelectric Point (pI)

16.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 6 - 103 1.4e-23 Mitochondrial carrier protein
Mito_carr PF00153 113 - 203 1.2e-16 Mitochondrial carrier protein
Mito_carr PF00153 212 - 300 7.7e-17 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
AccBSI CCGCTC 1 cut(s) 306
AciI CCGC 3 cut(s) 29, 75, 304
AclWI GGATC 1 cut(s) 692
AcoI YGGCCR 1 cut(s) 301
AcsI RAATTY 1 cut(s) 634
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 4 cut(s) 415, 566, 578, 861
AfeI AGCGCT 1 cut(s) 364
AfiI CCNNNNNNNGG 2 cut(s) 158, 629
AflII CTTAAG 1 cut(s) 143
AgsI TTSAA 5 cut(s) 89, 265, 289, 601, 802
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 3 cut(s) 100, 142, 880
AluI AGCT 3 cut(s) 100, 142, 880
Alw26I GTCTC 2 cut(s) 527, 682
AlwI GGATC 1 cut(s) 692
Aor51HI AGCGCT 1 cut(s) 364
AoxI GGCC 3 cut(s) 207, 228, 301
ApeKI GCWGC 4 cut(s) 53, 77, 365, 880
ApoI RAATTY 1 cut(s) 634
AspLEI GCGC 2 cut(s) 74, 365
AspS9I GGNCC 1 cut(s) 620
AsuC2I CCSGG 1 cut(s) 682
AsuHPI GGTGA 1 cut(s) 179
AvaII GGWCC 1 cut(s) 620
AxyI CCTNAGG 1 cut(s) 733
BbvI GCAGC 4 cut(s) 40, 64, 352, 867
BccI CCATC 3 cut(s) 164, 314, 503
BceAI ACGGC 1 cut(s) 434
BciT130I CCWGG 1 cut(s) 227
BciVI GTATCC 1 cut(s) 317
BclI TGATCA 1 cut(s) 874
BcnI CCSGG 1 cut(s) 682
BcoDI GTCTC 2 cut(s) 527, 682
BfaI CTAG 3 cut(s) 422, 479, 645
BfoI RGCGCY 2 cut(s) 75, 366
BfrI CTTAAG 1 cut(s) 143
BfuI GTATCC 1 cut(s) 317
BisI GCNGC 6 cut(s) 54, 75, 78, 304, 366, 881
BlsI GCNGC 6 cut(s) 55, 76, 79, 305, 367, 882
Bme1390I CCNGG 2 cut(s) 227, 682
Bme18I GGWCC 1 cut(s) 620
BmgT120I GGNCC 1 cut(s) 620
BmrFI CCNGG 2 cut(s) 227, 682
BmsI GCATC 1 cut(s) 421
BpmI CTGGAG 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 812
BpuMI CCSGG 1 cut(s) 682
BsaAI YACGTR 1 cut(s) 413
BsaI GGTCTC 1 cut(s) 527
BsaJI CCNNGG 2 cut(s) 568, 814
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 629
Bse21I CCTNAGG 1 cut(s) 733
Bse3DI GCAATG 1 cut(s) 763
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 2 cut(s) 568, 814
BseLI CCNNNNNNNGG 2 cut(s) 158, 629
BseMI GCAATG 1 cut(s) 763
BseMII CTCAG 2 cut(s) 269, 747
BseRI GAGGAG 2 cut(s) 730, 831
BseXI GCAGC 4 cut(s) 40, 64, 352, 867
BseYI CCCAGC 1 cut(s) 848
BsgI GTGCAG 1 cut(s) 63
BshFI GGCC 3 cut(s) 209, 230, 303
BsiSI CCGG 1 cut(s) 681
BslI CCNNNNNNNGG 2 cut(s) 158, 629
BsmAI GTCTC 2 cut(s) 527, 682
BsnI GGCC 3 cut(s) 209, 230, 303
Bso31I GGTCTC 1 cut(s) 527
Bsp143I GATC 2 cut(s) 684, 874
BspACI CCGC 3 cut(s) 29, 75, 304
BspANI GGCC 3 cut(s) 209, 230, 303
BspCNI CTCAG 2 cut(s) 268, 746
BspPI GGATC 1 cut(s) 692
BspTI CTTAAG 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 527
BsrBI CCGCTC 1 cut(s) 306
BsrDI GCAATG 1 cut(s) 763
BssECI CCNNGG 2 cut(s) 568, 814
BssMI GATC 2 cut(s) 684, 874
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 3 cut(s) 491, 676, 810
Bst6I CTCTTC 2 cut(s) 125, 714
BstAFI CTTAAG 1 cut(s) 143
BstBAI YACGTR 1 cut(s) 413
BstDEI CTNAG 2 cut(s) 255, 733
BstH2I RGCGCY 2 cut(s) 75, 366
BstHHI GCGC 2 cut(s) 74, 365
BstKTI GATC 2 cut(s) 687, 877
BstMAI GTCTC 2 cut(s) 527, 682
BstMBI GATC 2 cut(s) 684, 874
BstMWI GCNNNNNNNGC 5 cut(s) 62, 71, 106, 300, 371
BstNI CCWGG 1 cut(s) 227
BstNSI RCATGY 4 cut(s) 443, 577, 743, 770
BstSCI CCNGG 2 cut(s) 225, 680
BstV1I GCAGC 4 cut(s) 40, 64, 352, 867
BstX2I RGATCY 1 cut(s) 684
BstYI RGATCY 1 cut(s) 684
Bsu36I CCTNAGG 1 cut(s) 733
BsuI GTATCC 1 cut(s) 317
BsuRI GGCC 3 cut(s) 209, 230, 303
BtsIMutI CAGTG 2 cut(s) 426, 806
CfoI GCGC 2 cut(s) 74, 365
Cfr13I GGNCC 1 cut(s) 620
Csp6I GTAC 4 cut(s) 414, 565, 577, 860
CviAII CATG 5 cut(s) 440, 574, 740, 767, 902
CviQI GTAC 4 cut(s) 414, 565, 577, 860
DdeI CTNAG 2 cut(s) 255, 733
DpnI GATC 2 cut(s) 686, 876
DpnII GATC 2 cut(s) 684, 874
DraI TTTAAA 2 cut(s) 178, 277
EaeI YGGCCR 1 cut(s) 301
Eam1104I CTCTTC 2 cut(s) 125, 714
EarI CTCTTC 2 cut(s) 125, 714
Eco31I GGTCTC 1 cut(s) 527
Eco47I GGWCC 1 cut(s) 620
Eco47III AGCGCT 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 339
Eco81I CCTNAGG 1 cut(s) 733
EcoRII CCWGG 1 cut(s) 225
EcoT22I ATGCAT 1 cut(s) 772
FaeI CATG 5 cut(s) 443, 577, 743, 770, 905
FatI CATG 5 cut(s) 439, 573, 739, 766, 901
FbaI TGATCA 1 cut(s) 874
Fnu4HI GCNGC 6 cut(s) 54, 75, 78, 304, 366, 881
Fsp4HI GCNGC 6 cut(s) 54, 75, 78, 304, 366, 881
FspBI CTAG 3 cut(s) 422, 479, 645
GlaI GCGC 2 cut(s) 73, 364
GluI GCNGC 6 cut(s) 54, 75, 78, 304, 366, 881
GsaI CCCAGC 1 cut(s) 852
GsuI CTGGAG 1 cut(s) 390
HaeII RGCGCY 2 cut(s) 75, 366
HaeIII GGCC 3 cut(s) 209, 230, 303
HapII CCGG 1 cut(s) 681
HhaI GCGC 2 cut(s) 74, 365
Hin1II CATG 5 cut(s) 443, 577, 743, 770, 905
Hin6I GCGC 2 cut(s) 72, 363
HinP1I GCGC 2 cut(s) 72, 363
HincII GTYRAC 1 cut(s) 729
HindII GTYRAC 1 cut(s) 729
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 1 cut(s) 112
HpaI GTTAAC 1 cut(s) 729
HpaII CCGG 1 cut(s) 681
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 5 cut(s) 416, 487, 729, 787, 860
Hpy188I TCNGA 6 cut(s) 16, 191, 470, 714, 815, 842
Hpy188III TCNNGA 5 cut(s) 357, 401, 479, 735, 776
Hpy8I GTNNAC 5 cut(s) 416, 487, 729, 787, 860
HpyAV CCTTC 1 cut(s) 191
HpyCH4III ACNGT 3 cut(s) 491, 676, 810
HpyCH4IV ACGT 1 cut(s) 412
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 71, 106, 300, 371
HpyF3I CTNAG 2 cut(s) 255, 733
HpySE526I ACGT 1 cut(s) 412
Hsp92II CATG 5 cut(s) 443, 577, 743, 770, 905
HspAI GCGC 2 cut(s) 72, 363
Ksp22I TGATCA 1 cut(s) 874
KspAI GTTAAC 1 cut(s) 729
Kzo9I GATC 2 cut(s) 684, 874
LmnI GCTCC 1 cut(s) 371
Lsp1109I GCAGC 4 cut(s) 40, 64, 352, 867
LweI GCATC 1 cut(s) 421
MaeI CTAG 3 cut(s) 422, 479, 645
MaeII ACGT 1 cut(s) 412
MaeIII GTNAC 3 cut(s) 281, 667, 820
MalI GATC 2 cut(s) 686, 876
MbiI CCGCTC 1 cut(s) 306
MboI GATC 2 cut(s) 684, 874
MboII GAAGA 2 cut(s) 142, 701
MflI RGATCY 1 cut(s) 684
MluCI AATT 3 cut(s) 464, 555, 634
MmeI TCCRAC 4 cut(s) 424, 598, 641, 820
Mph1103I ATGCAT 1 cut(s) 772
MseI TTAA 5 cut(s) 144, 177, 276, 450, 728
MspA1I CMGCKG 2 cut(s) 77, 880
MspCI CTTAAG 1 cut(s) 143
MspI CCGG 1 cut(s) 681
MspR9I CCNGG 2 cut(s) 227, 682
MvaI CCWGG 1 cut(s) 227
MwoI GCNNNNNNNGC 5 cut(s) 62, 71, 106, 300, 371
NciI CCSGG 1 cut(s) 682
NdeII GATC 2 cut(s) 684, 874
NlaIII CATG 5 cut(s) 443, 577, 743, 770, 905
NmuCI GTSAC 1 cut(s) 667
NsiI ATGCAT 1 cut(s) 772
NspI RCATGY 4 cut(s) 443, 577, 743, 770
PfeI GAWTC 1 cut(s) 112
PfoI TCCNGGA 1 cut(s) 680
PkrI GCNGC 6 cut(s) 55, 76, 79, 305, 367, 882
Ppu21I YACGTR 1 cut(s) 413
PsiI TTATAA 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 225
PspFI CCCAGC 1 cut(s) 848
PspGI CCWGG 1 cut(s) 225
PspPI GGNCC 1 cut(s) 620
PsuI RGATCY 1 cut(s) 684
PvuII CAGCTG 1 cut(s) 880
RsaI GTAC 4 cut(s) 415, 566, 578, 861
RsaNI GTAC 4 cut(s) 414, 565, 577, 860
SaqAI TTAA 5 cut(s) 144, 177, 276, 450, 728
SatI GCNGC 6 cut(s) 54, 75, 78, 304, 366, 881
Sau3AI GATC 2 cut(s) 684, 874
Sau96I GGNCC 1 cut(s) 620
ScrFI CCNGG 2 cut(s) 227, 682
SfaNI GCATC 1 cut(s) 421
SinI GGWCC 1 cut(s) 620
SmlI CTYRAG 2 cut(s) 143, 791
SmoI CTYRAG 2 cut(s) 143, 791
Sse9I AATT 3 cut(s) 464, 555, 634
SsiI CCGC 3 cut(s) 29, 75, 304
SspMI CTAG 3 cut(s) 422, 479, 645
StyD4I CCNGG 2 cut(s) 225, 680
TaaI ACNGT 3 cut(s) 491, 676, 810
TaiI ACGT 1 cut(s) 415
TaqI TCGA 2 cut(s) 241, 529
TasI AATT 3 cut(s) 464, 555, 634
TatI WGTACW 2 cut(s) 576, 859
TauI GCSGC 2 cut(s) 77, 306
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 5 cut(s) 144, 177, 276, 450, 728
Tru9I TTAA 5 cut(s) 144, 177, 276, 450, 728
TscAI CASTG 2 cut(s) 433, 813
TseFI GTSAC 1 cut(s) 667
TseI GCWGC 4 cut(s) 53, 77, 365, 880
Tsp45I GTSAC 1 cut(s) 667
TspDTI ATGAA 2 cut(s) 143, 372
TspRI CASTG 2 cut(s) 433, 813
Vha464I CTTAAG 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 620
XapI RAATTY 1 cut(s) 634
XbaI TCTAGA 1 cut(s) 478
XceI RCATGY 4 cut(s) 443, 577, 743, 770
XspI CTAG 3 cut(s) 422, 479, 645
Zsp2I ATGCAT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.