Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009382

Physical Location & Seq

Genomic Coordinates Reverse (-)

34017776 .. 34019651

Gene Structure 1876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1204800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCAACAAAGTCTGAGAAGTTTTCTGTGGATTTTGTGATGGGGGGAATGGCAGCATTGGTGTCAAAGAGTGCAGCAGCACCCATTGAGAGAGTGAAGCTTCTGCTGCAGAATCAGGGAGAGATGATAAAAAGAGGGCAGATTAAGAGACCTTATAAGGGTGTTGGTGATTGCTTTACAAGGGTGTTTAGAGAGGAAGGCGTGTTGTCGTTTTGGCGAGGCAACCAGGCCAATGCCATTCGATATTTTCCTACTCAGGCCTTCAACTTTGCATTTAGAGGTTACTTCAAAAGCATCTTTGGCTGCTCAAAAGAGAAAGATGGGTGCATAATGTGCTTTGCTGGAAATGTGGCTTCAGGAAGTGCTGCTGGAGCAAGTACTTCATTGTTTCTATATCATCTAGACTATGCCCGTACGCGGCTAGGCACCGATGGGAGGGGTTCTGCAGTCAATGGTCAACACCAGTTCAGATGGATTCTAGATGTTTACAGTAAAACCTTATCTAGTAATGGAATGTTTGGGATTTATGACACCATGAAGCCTATTGTTTTGGTTGGTCCTTTGGGGGGGAATTTTTTGGCTAGTTTTTTGTTTGGCTGGAGTGTTACAACATTCTCCGGGGTCTGCGCCTATCCATTTGATACCATTCGGCGGAGAATGATGCTAACGTCAGGACAACCGTCAAAGTATCGCAACGCCTTGCATGCATTTCGGGAGATTGTTCACCTTGAGGGTTTCAAAGCACTGTTCCGAGGAGTAACTGCAAATATGCTTCTAGGAGTTGCCGGTGCTGGGGTACTTGCAGGATATGACCAGCTCCAGAGAGTTGCGTATAGAAAGGGTTATTTTATTGAGCCACATCAAAAAGTTATGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000295 GO:0003006 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009791 GO:0009987 GO:0010154 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022414 GO:0022622 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0042175 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0098656 GO:0098827 GO:0099402 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

293

Amino Acids

32.34

Weight (kDa)

9.93

Isoelectric Point (pI)

22.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	6 - 101	2.3e-22	Mitochondrial carrier protein
Mito_carr	PF00153	113 - 183	3.4e-07	Mitochondrial carrier protein
Mito_carr	PF00153	191 - 279	1.5e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17400
fragaria_vesca	FvH4_5g13470
malus_domestica	MD06G1204800.v1.1 MD14G1215900.v1.1
prunus_persica	Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1 Prupe.5G208700_v2.0.a1
pyrus_communis	pycom06g18290 pycom14g17870
rosa_chinensis	RchiOBHm_Chr7g0183601
rosa_laevigata	RLG00000005038
rosa_multiflora	Rmu_sc0042401.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270370
rosa_rugosa	Rorug06G0458800
rosa_samantha	Rh7AG059900 Rh7BG059600 Rh7CG061600 Rh7DG060000
rosa_wichuraiana	Rw7G004920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AccB1I	GGYRCC	1 cut(s)	425
AccII	CGCG	1 cut(s)	418
AciI	CCGC	2 cut(s)	418, 652
AcsI	RAATTY	1 cut(s)	571
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	3 cut(s)	379, 415, 798
AfiI	CCNNNNNNNGG	6 cut(s)	158, 417, 435, 566, 651, 792
AgsI	TTSAA	3 cut(s)	265, 289, 739
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	2 cut(s)	100, 817
AluI	AGCT	2 cut(s)	100, 817
Alw26I	GTCTC	1 cut(s)	142
AoxI	GGCC	2 cut(s)	228, 258
ApeKI	GCWGC	6 cut(s)	53, 74, 77, 106, 303, 365
ApoI	RAATTY	1 cut(s)	571
AspLEI	GCGC	1 cut(s)	629
AspS9I	GGNCC	1 cut(s)	557
AsuC2I	CCSGG	1 cut(s)	619
AsuHPI	GGTGA	2 cut(s)	179, 716
AvaII	GGWCC	1 cut(s)	557
BanI	GGYRCC	1 cut(s)	425
BbvI	GCAGC	6 cut(s)	65, 86, 89, 93, 290, 352
BccI	CCATC	4 cut(s)	34, 314, 425, 465
BcgI	CGANNNNNNTGC	2 cut(s)	692, 726
BciT130I	CCWGG	1 cut(s)	227
BcnI	CCSGG	1 cut(s)	619
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	6 cut(s)	401, 422, 479, 504, 582, 776
BfmI	CTRYAG	2 cut(s)	107, 444
BisI	GCNGC	7 cut(s)	54, 75, 78, 107, 304, 366, 419
BlsI	GCNGC	7 cut(s)	55, 76, 79, 108, 305, 367, 420
BmcAI	AGTACT	1 cut(s)	379
Bme1390I	CCNGG	2 cut(s)	227, 619
Bme18I	GGWCC	1 cut(s)	557
BmgT120I	GGNCC	1 cut(s)	557
BmiI	GGNNCC	1 cut(s)	427
BmrFI	CCNGG	2 cut(s)	227, 619
BmsI	GCATC	2 cut(s)	303, 651
BoxI	GACNNNNGTC	1 cut(s)	679
BpmI	CTGGAG	3 cut(s)	390, 619, 803
BpuEI	CTTGAG	1 cut(s)	749
BpuMI	CCSGG	1 cut(s)	619
BsaI	GGTCTC	1 cut(s)	142
BsaJI	CCNNGG	2 cut(s)	618, 751
Bsc4I	CCNNNNNNNGG	6 cut(s)	158, 417, 435, 566, 651, 792
Bse118I	RCCGGY	1 cut(s)	785
Bse1I	ACTGG	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	2 cut(s)	618, 751
BseLI	CCNNNNNNNGG	6 cut(s)	158, 417, 435, 566, 651, 792
BseMII	CTCAG	2 cut(s)	6, 269
BseNI	ACTGG	1 cut(s)	463
BseRI	GAGGAG	1 cut(s)	768
BseXI	GCAGC	6 cut(s)	65, 86, 89, 93, 290, 352
BseYI	CCCAGC	1 cut(s)	791
BsgI	GTGCAG	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	418
BshFI	GGCC	2 cut(s)	230, 260
BshNI	GGYRCC	1 cut(s)	425
BsiSI	CCGG	2 cut(s)	618, 786
BsiWI	CGTACG	1 cut(s)	413
BslI	CCNNNNNNNGG	6 cut(s)	158, 417, 435, 566, 651, 792
BsmAI	GTCTC	1 cut(s)	142
BsnI	GGCC	2 cut(s)	230, 260
Bso31I	GGTCTC	1 cut(s)	142
BspACI	CCGC	2 cut(s)	418, 652
BspANI	GGCC	2 cut(s)	230, 260
BspCNI	CTCAG	2 cut(s)	7, 268
BspFNI	CGCG	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	427
BspMAI	CTGCAG	2 cut(s)	111, 448
BspT107I	GGYRCC	1 cut(s)	425
BspTNI	GGTCTC	1 cut(s)	142
BsrFI	RCCGGY	1 cut(s)	785
BsrI	ACTGG	1 cut(s)	463
BssAI	RCCGGY	1 cut(s)	785
BssECI	CCNNGG	2 cut(s)	618, 751
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	3 cut(s)	491, 681, 747
BstAPI	GCANNNNNTGC	1 cut(s)	333
BstC8I	GCNNGC	1 cut(s)	705
BstDEI	CTNAG	2 cut(s)	15, 255
BstFNI	CGCG	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	629
BstMAI	GTCTC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	5 cut(s)	106, 300, 333, 371, 704
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	707
BstPAI	GACNNNNGTC	1 cut(s)	679
BstSCI	CCNGG	2 cut(s)	225, 617
BstSFI	CTRYAG	2 cut(s)	107, 444
BstUI	CGCG	1 cut(s)	418
BstV1I	GCAGC	6 cut(s)	65, 86, 89, 93, 290, 352
BsuRI	GGCC	2 cut(s)	230, 260
BtsIMutI	CAGTG	1 cut(s)	743
Cac8I	GCNNGC	1 cut(s)	705
CfoI	GCGC	1 cut(s)	629
Cfr10I	RCCGGY	1 cut(s)	785
Cfr13I	GGNCC	1 cut(s)	557
Csp6I	GTAC	3 cut(s)	378, 414, 797
CviAII	CATG	2 cut(s)	535, 704
CviQI	GTAC	3 cut(s)	378, 414, 797
DdeI	CTNAG	2 cut(s)	15, 255
EciI	GGCGGA	1 cut(s)	667
Eco147I	AGGCCT	1 cut(s)	260
Eco31I	GGTCTC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	557
Eco57I	CTGAAG	1 cut(s)	339
EcoRII	CCWGG	1 cut(s)	225
EcoT22I	ATGCAT	1 cut(s)	709
FaeI	CATG	2 cut(s)	538, 707
FatI	CATG	2 cut(s)	534, 703
Fnu4HI	GCNGC	7 cut(s)	54, 75, 78, 107, 304, 366, 419
Fsp4HI	GCNGC	7 cut(s)	54, 75, 78, 107, 304, 366, 419
FspBI	CTAG	6 cut(s)	401, 422, 479, 504, 582, 776
GlaI	GCGC	1 cut(s)	628
GluI	GCNGC	7 cut(s)	54, 75, 78, 107, 304, 366, 419
GsaI	CCCAGC	1 cut(s)	795
GsuI	CTGGAG	3 cut(s)	390, 619, 803
HaeIII	GGCC	2 cut(s)	230, 260
HapII	CCGG	2 cut(s)	618, 786
HhaI	GCGC	1 cut(s)	629
Hin1II	CATG	2 cut(s)	538, 707
Hin6I	GCGC	1 cut(s)	627
HinP1I	GCGC	1 cut(s)	627
HincII	GTYRAC	1 cut(s)	458
HindII	GTYRAC	1 cut(s)	458
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	2 cut(s)	112, 475
HpaII	CCGG	2 cut(s)	618, 786
HphI	GGTGA	2 cut(s)	179, 716
Hpy166II	GTNNAC	3 cut(s)	458, 487, 724
Hpy188I	TCNGA	3 cut(s)	16, 470, 752
Hpy188III	TCNNGA	6 cut(s)	357, 401, 479, 672, 713, 820
Hpy8I	GTNNAC	3 cut(s)	458, 487, 724
HpyAV	CCTTC	2 cut(s)	191, 271
HpyCH4III	ACNGT	3 cut(s)	491, 681, 747
HpyCH4IV	ACGT	1 cut(s)	668
HpyCH4V	TGCA	9 cut(s)	74, 109, 272, 327, 446, 703, 707, 764, 803
HpyF10VI	GCNNNNNNNGC	5 cut(s)	106, 300, 333, 371, 704
HpyF3I	CTNAG	2 cut(s)	15, 255
HpySE526I	ACGT	1 cut(s)	668
Hsp92II	CATG	2 cut(s)	538, 707
HspAI	GCGC	1 cut(s)	627
LmnI	GCTCC	2 cut(s)	371, 822
Lsp1109I	GCAGC	6 cut(s)	65, 86, 89, 93, 290, 352
LweI	GCATC	2 cut(s)	303, 651
MaeI	CTAG	6 cut(s)	401, 422, 479, 504, 582, 776
MaeII	ACGT	1 cut(s)	668
MaeIII	GTNAC	3 cut(s)	281, 604, 757
MluCI	AATT	1 cut(s)	571
MnlI	CCTC	7 cut(s)	128, 187, 212, 272, 429, 724, 746
Mph1103I	ATGCAT	1 cut(s)	709
MseI	TTAA	1 cut(s)	144
MspI	CCGG	2 cut(s)	618, 786
MspR9I	CCNGG	2 cut(s)	227, 619
MvaI	CCWGG	1 cut(s)	227
MvnI	CGCG	1 cut(s)	418
MwoI	GCNNNNNNNGC	5 cut(s)	106, 300, 333, 371, 704
NciI	CCSGG	1 cut(s)	619
NlaIII	CATG	2 cut(s)	538, 707
NlaIV	GGNNCC	1 cut(s)	427
NsiI	ATGCAT	1 cut(s)	709
NspI	RCATGY	1 cut(s)	707
PaeI	GCATGC	1 cut(s)	707
PceI	AGGCCT	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	112, 475
Pfl23II	CGTACG	1 cut(s)	413
PkrI	GCNGC	7 cut(s)	55, 76, 79, 108, 305, 367, 420
PshAI	GACNNNNGTC	1 cut(s)	679
PsiI	TTATAA	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	225
PspFI	CCCAGC	1 cut(s)	791
PspGI	CCWGG	1 cut(s)	225
PspLI	CGTACG	1 cut(s)	413
PspN4I	GGNNCC	1 cut(s)	427
PspPI	GGNCC	1 cut(s)	557
PstI	CTGCAG	2 cut(s)	111, 448
RsaI	GTAC	3 cut(s)	379, 415, 798
RsaNI	GTAC	3 cut(s)	378, 414, 797
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	7 cut(s)	54, 75, 78, 107, 304, 366, 419
Sau96I	GGNCC	1 cut(s)	557
ScaI	AGTACT	1 cut(s)	379
ScrFI	CCNGG	2 cut(s)	227, 619
SetI	ASST	7 cut(s)	102, 154, 283, 500, 671, 729, 819
SfaNI	GCATC	2 cut(s)	303, 651
SfcI	CTRYAG	2 cut(s)	107, 444
SinI	GGWCC	1 cut(s)	557
SmlI	CTYRAG	1 cut(s)	728
SmoI	CTYRAG	1 cut(s)	728
SphI	GCATGC	1 cut(s)	707
Sse9I	AATT	1 cut(s)	571
SseBI	AGGCCT	1 cut(s)	260
SsiI	CCGC	2 cut(s)	418, 652
SspMI	CTAG	6 cut(s)	401, 422, 479, 504, 582, 776
StuI	AGGCCT	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	225, 617
TaaI	ACNGT	3 cut(s)	491, 681, 747
TaiI	ACGT	1 cut(s)	671
TaqI	TCGA	1 cut(s)	241
TasI	AATT	1 cut(s)	571
TatI	WGTACW	1 cut(s)	377
TauI	GCSGC	1 cut(s)	421
TfiI	GAWTC	2 cut(s)	112, 475
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	1 cut(s)	750
TseI	GCWGC	6 cut(s)	53, 74, 77, 106, 303, 365
TspDTI	ATGAA	2 cut(s)	372, 551
TspRI	CASTG	1 cut(s)	750
VpaK11BI	GGWCC	1 cut(s)	557
XapI	RAATTY	1 cut(s)	571
XbaI	TCTAGA	2 cut(s)	400, 478
XceI	RCATGY	1 cut(s)	707
XspI	CTAG	6 cut(s)	401, 422, 479, 504, 582, 776
ZrmI	AGTACT	1 cut(s)	379
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.