AT5G17850

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009055
Physical Location & Seq
Forward (+)
5898852 .. 5901157
2306 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17850.1

Sequence Viewer

Length: 1680 bp
ATGGGATTTTCATTTTCTTCAAACCGTTTTGGTTACTTGACAGTCACATTCCTTCTCGTTATCTCTTGTCTTCTGTTGGGTTTCTTCACGAATCCTGTTGATTCAAGTGCTCTAAGACCTAAATCAGAGCATGATTGTAGTGCCCTGAAGCACTTTCATGACTACAAATCAAAGTGTGCTTACCTGAAATCGATTGATCCATGTGCTAGTCAAGGTTTCTTCGATTACCTCTCTTTTCTCTACTGTAATTTCGAAGGTTTCCCAATTTTGGGTCAGTTTCTTCTCTTCCTCTGGTTGCTTCTCTTGTTCTATCTATTGGGTCATACGGCCTCTGAGTACTTTTGTTCATCTCTTGAAAGTCTCTCAAAGCTGCTTAATTTGTCACCAACTGTTGCTGGTGTTACTCTTTTGTCGCTTGGTAATGGTGCTCCTGATTTGTTTGCAAGTTTGGTCTCTTTCATGGGAGAATCTAAAGGTACTTATGATGTTGGTCTCAACACTGTTGTGGGAGGTTCTGGTTTTGTTACCTGTGTTGTTGTTGGGATCATTAGCATTTCGTTGCATAAGAGACGTGTGAGGATTGAGAGAGCTGCGTTTATAAGAGACATTTGCTTCTTCTGTGCTGCTATTGGTTCTTTGGCTTTGATTTTGGTCTATGGAAAGATCAATTTCTGGGGTGCTCTTGGGTTTTGTTCATTGTATGCTGTTTATGTTGCCTTTGTGGTTCTCTCTTGGAGATTTGGTGGAGATCAAGGTGCTGAATCTGATCTTGAGTCAATCCATAAGCGTGGTAGTCTTAGTGAACCAATCTTGCAGAGAGACGGTCTTGAGGAAATTGAAGATGGTGTTGTTAATGGAGAGCATCAGATTGTTGATGATGATGATGATCACCAGAGATATTATTACTGGAAAAGATTGGTCATTTGGGCTATCACTCTGCCTCTCAACTTGCCAAGGATATTAACAATTCCTGTAGTGAGTGAAGACAAATGGTCTAAACCATTAGCTGTTGCCTCGGTCACATTTGCCCCGGTTCTGTTGTCGTTTTTATGGAACTGGAAGCGGAAACCGACGAGTTTTGAGGCGGGGGTTGTTTATCTCATCGGGTGTTTGATCGGTATAGCTCTTGGTTTCATTGCAGGAGCCACGACGAAGAAATTAACCCCACCAAAGAAATGGTTGTTGCCTTGGTTAGCAGGAGGGTTTGTAATGAGCATGACATGGAGTTACATATCAGCACAAGAGCTAGTTGCGCTTTTGACCTCACTAGGATACATTTTCGGTGTAAGCCCTTCGATCTTAGGCTTAACGGTCCTCGCTTGGGGTAATTCAATTGGAGATCTAATAACCAACTTGACAATGGCGCTACACGATGGGAACGAAGGAGCTCAAGTGGCTGTATCGGGATGTTACGCCGGTCCGATCTTCAATACATTGTTTGCTCTCGGGATATCGCTTGTGGGATGTGCATGGGAGGCTTATCCGTTGAGCATTGTGATTAAGACAGATCCTCGTTTGTTGGAGAGTCTTGGATTTCTGGTCGCAGGACTGGTATGGTCGTTCTTGGTTCTGTTTAGTAACCGTATGAGGCTTGGTGGTGTGATGGGCATAGGGCTTTTGGTTATTTACTTGGCTTCATTGTCTCTAAGAATTATGCAAACCGTTGGAGATGCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_Ca_ex

Protein Analysis

559

Amino Acids

61.18

Weight (kDa)

6.37

Isoelectric Point (pI)

27.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 96 - 242 2.6e-27 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 398 - 551 1.2e-25 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 599
AciI CCGC 2 cut(s) 1063, 1085
AclWI GGATC 3 cut(s) 191, 551, 1502
AcuI CTGAAG 1 cut(s) 167
AfaI GTAC 2 cut(s) 338, 478
AfiI CCNNNNNNNGG 3 cut(s) 268, 269, 1321
AflIII ACRYGT 1 cut(s) 571
AgsI TTSAA 6 cut(s) 21, 105, 356, 839, 1332, 1429
AhdI GACNNNNNGTC 1 cut(s) 991
AjiI CACGTC 1 cut(s) 572
AleI CACNNNNGTG 1 cut(s) 503
AluBI AGCT 6 cut(s) 370, 590, 1007, 1124, 1246, 1388
AluI AGCT 6 cut(s) 370, 590, 1007, 1124, 1246, 1388
Alw21I GWGCWC 4 cut(s) 112, 430, 682, 1390
Alw26I GTCTC 7 cut(s) 365, 457, 497, 562, 597, 813, 1647
AlwI GGATC 3 cut(s) 191, 551, 1502
Ama87I CYCGRG 1 cut(s) 1445
AoxI GGCC 1 cut(s) 327
ApeKI GCWGC 3 cut(s) 370, 590, 623
AspLEI GCGC 2 cut(s) 1255, 1366
AspS9I GGNCC 2 cut(s) 1312, 1418
AsuC2I CCSGG 1 cut(s) 1031
AsuHPI GGTGA 2 cut(s) 375, 881
AsuII TTCGAA 1 cut(s) 252
AvaI CYCGRG 1 cut(s) 1445
AvaII GGWCC 2 cut(s) 1312, 1418
BaeGI GKGCMC 1 cut(s) 145
BanII GRGCYC 1 cut(s) 1390
BbsI GAAGAC 2 cut(s) 62, 990
Bbv12I GWGCWC 4 cut(s) 112, 430, 682, 1390
BbvI GCAGC 3 cut(s) 357, 577, 610
BccI CCATC 3 cut(s) 836, 1367, 1597
BceAI ACGGC 1 cut(s) 342
BciVI GTATCC 1 cut(s) 1265
BclI TGATCA 1 cut(s) 886
BcnI CCSGG 1 cut(s) 1031
BcoDI GTCTC 7 cut(s) 365, 457, 497, 562, 597, 813, 1647
BfaI CTAG 3 cut(s) 207, 1247, 1268
BfmI CTRYAG 1 cut(s) 972
BfoI RGCGCY 1 cut(s) 1367
BfuI GTATCC 1 cut(s) 1265
BglII AGATCT 1 cut(s) 1339
BisI GCNGC 3 cut(s) 371, 591, 624
BlsI GCNGC 3 cut(s) 372, 592, 625
BmcAI AGTACT 1 cut(s) 338
Bme1390I CCNGG 1 cut(s) 1031
Bme18I GGWCC 2 cut(s) 1312, 1418
BmeRI GACNNNNNGTC 1 cut(s) 991
BmeT110I CYCGRG 1 cut(s) 1445
BmgBI CACGTC 1 cut(s) 572
BmgT120I GGNCC 2 cut(s) 1312, 1418
BmiI GGNNCC 1 cut(s) 1144
BmrFI CCNGG 1 cut(s) 1031
BmsI GCATC 2 cut(s) 871, 1660
BpiI GAAGAC 2 cut(s) 62, 990
Bpu14I TTCGAA 1 cut(s) 252
BpuEI CTTGAG 3 cut(s) 791, 848, 1374
BpuMI CCSGG 1 cut(s) 1031
Bsa29I ATCGAT 1 cut(s) 191
BsaBI GATNNNNATC 1 cut(s) 885
BsaI GGTCTC 2 cut(s) 457, 497
BsaJI CCNNGG 4 cut(s) 953, 1014, 1029, 1187
BsaXI ACNNNNNCTCC 6 cut(s) 727, 757, 1191, 1221, 1377, 1407
Bsc4I CCNNNNNNNGG 3 cut(s) 268, 269, 1321
Bse118I RCCGGY 1 cut(s) 1415
Bse1I ACTGG 3 cut(s) 911, 1061, 1554
Bse3DI GCAATG 1 cut(s) 1134
Bse8I GATNNNNATC 1 cut(s) 885
BseCI ATCGAT 1 cut(s) 191
BseDI CCNNGG 4 cut(s) 953, 1014, 1029, 1187
BseGI GGATG 2 cut(s) 1412, 1469
BseJI GATNNNNATC 1 cut(s) 885
BseLI CCNNNNNNNGG 3 cut(s) 268, 269, 1321
BseMI GCAATG 1 cut(s) 1134
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 3 cut(s) 911, 1061, 1554
BseSI GKGCMC 1 cut(s) 145
BseXI GCAGC 3 cut(s) 357, 577, 610
BshFI GGCC 1 cut(s) 329
BshVI ATCGAT 1 cut(s) 191
BsiHKAI GWGCWC 4 cut(s) 112, 430, 682, 1390
BsiHKCI CYCGRG 1 cut(s) 1445
BsiSI CCGG 2 cut(s) 1031, 1416
BslI CCNNNNNNNGG 3 cut(s) 268, 269, 1321
BsmAI GTCTC 7 cut(s) 365, 457, 497, 562, 597, 813, 1647
BsmBI CGTCTC 2 cut(s) 562, 813
BsnI GGCC 1 cut(s) 329
Bso31I GGTCTC 2 cut(s) 457, 497
BsoBI CYCGRG 1 cut(s) 1445
Bsp119I TTCGAA 1 cut(s) 252
Bsp1286I GDGCHC 5 cut(s) 112, 145, 430, 682, 1390
BspACI CCGC 2 cut(s) 1063, 1085
BspANI GGCC 1 cut(s) 329
BspCNI CTCAG 1 cut(s) 325
BspDI ATCGAT 1 cut(s) 191
BspHI TCATGA 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 1144
BspPI GGATC 3 cut(s) 191, 551, 1502
BspT104I TTCGAA 1 cut(s) 252
BspTNI GGTCTC 2 cut(s) 457, 497
BsrDI GCAATG 1 cut(s) 1134
BsrFI RCCGGY 1 cut(s) 1415
BsrI ACTGG 3 cut(s) 911, 1061, 1554
BssAI RCCGGY 1 cut(s) 1415
BssECI CCNNGG 4 cut(s) 953, 1014, 1029, 1187
BssT1I CCWWGG 2 cut(s) 953, 1187
Bst4CI ACNGT 9 cut(s) 26, 43, 245, 391, 502, 824, 1312, 1583, 1663
Bst6I CTCTTC 1 cut(s) 290
BstBI TTCGAA 1 cut(s) 252
BstDEI CTNAG 5 cut(s) 113, 333, 797, 1300, 1646
BstF5I GGATG 2 cut(s) 1412, 1469
BstH2I RGCGCY 1 cut(s) 1367
BstHHI GCGC 2 cut(s) 1255, 1366
BstMAI GTCTC 7 cut(s) 365, 457, 497, 562, 597, 813, 1647
BstMWI GCNNNNNNNGC 3 cut(s) 1252, 1394, 1475
BstSCI CCNGG 1 cut(s) 1029
BstSFI CTRYAG 1 cut(s) 972
BstSLI GKGCMC 1 cut(s) 145
BstV1I GCAGC 3 cut(s) 357, 577, 610
BstV2I GAAGAC 2 cut(s) 62, 990
BstX2I RGATCY 2 cut(s) 1339, 1507
BstXI CCANNNNNNTGG 2 cut(s) 788, 1176
BstYI RGATCY 2 cut(s) 1339, 1507
Bsu15I ATCGAT 1 cut(s) 191
BsuI GTATCC 1 cut(s) 1265
BsuRI GGCC 1 cut(s) 329
BsuTUI ATCGAT 1 cut(s) 191
BtrI CACGTC 1 cut(s) 572
BtsCI GGATG 2 cut(s) 1412, 1469
BtsIMutI CAGTG 1 cut(s) 498
CciI TCATGA 1 cut(s) 157
CfoI GCGC 2 cut(s) 1255, 1366
Cfr10I RCCGGY 1 cut(s) 1415
Cfr13I GGNCC 2 cut(s) 1312, 1418
ClaI ATCGAT 1 cut(s) 191
CpoI CGGWCCG 1 cut(s) 1418
Csp6I GTAC 2 cut(s) 337, 477
CspI CGGWCCG 1 cut(s) 1418
CviAII CATG 7 cut(s) 131, 158, 201, 460, 1216, 1221, 1470
CviQI GTAC 2 cut(s) 337, 477
DdeI CTNAG 5 cut(s) 113, 333, 797, 1300, 1646
DriI GACNNNNNGTC 1 cut(s) 991
Eam1104I CTCTTC 1 cut(s) 290
Eam1105I GACNNNNNGTC 1 cut(s) 991
EarI CTCTTC 1 cut(s) 290
Ecl136II GAGCTC 1 cut(s) 1388
Eco130I CCWWGG 2 cut(s) 953, 1187
Eco24I GRGCYC 1 cut(s) 1390
Eco31I GGTCTC 2 cut(s) 457, 497
Eco32I GATATC 1 cut(s) 1452
Eco47I GGWCC 2 cut(s) 1312, 1418
Eco53kI GAGCTC 1 cut(s) 1388
Eco57I CTGAAG 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 1445
EcoICRI GAGCTC 1 cut(s) 1388
EcoRV GATATC 1 cut(s) 1452
EcoT14I CCWWGG 2 cut(s) 953, 1187
EcoT38I GRGCYC 1 cut(s) 1390
ErhI CCWWGG 2 cut(s) 953, 1187
Esp3I CGTCTC 2 cut(s) 562, 813
FaeI CATG 7 cut(s) 134, 161, 204, 463, 1219, 1224, 1473
FatI CATG 7 cut(s) 130, 157, 200, 459, 1215, 1220, 1469
FauI CCCGC 1 cut(s) 1078
FbaI TGATCA 1 cut(s) 886
Fnu4HI GCNGC 3 cut(s) 371, 591, 624
FokI GGATG 2 cut(s) 1419, 1476
FriOI GRGCYC 1 cut(s) 1390
Fsp4HI GCNGC 3 cut(s) 371, 591, 624
FspBI CTAG 3 cut(s) 207, 1247, 1268
GlaI GCGC 2 cut(s) 1254, 1365
GluI GCNGC 3 cut(s) 371, 591, 624
HaeII RGCGCY 1 cut(s) 1367
HaeIII GGCC 1 cut(s) 329
HapII CCGG 2 cut(s) 1031, 1416
HhaI GCGC 2 cut(s) 1255, 1366
Hin1II CATG 7 cut(s) 134, 161, 204, 463, 1219, 1224, 1473
Hin6I GCGC 2 cut(s) 1253, 1364
HinP1I GCGC 2 cut(s) 1253, 1364
HinfI GANTC 6 cut(s) 91, 101, 467, 761, 773, 1525
HpaII CCGG 2 cut(s) 1031, 1416
HphI GGTGA 2 cut(s) 375, 881
Hpy166II GTNNAC 1 cut(s) 803
Hpy188I TCNGA 5 cut(s) 127, 334, 766, 867, 1422
Hpy188III TCNNGA 8 cut(s) 88, 158, 353, 431, 770, 827, 1404, 1447
Hpy8I GTNNAC 1 cut(s) 803
Hpy99I CGWCG 2 cut(s) 1075, 1153
HpyAV CCTTC 4 cut(s) 62, 248, 1302, 1376
HpyCH4III ACNGT 9 cut(s) 26, 43, 245, 391, 502, 824, 1312, 1583, 1663
HpyCH4IV ACGT 1 cut(s) 571
HpyCH4V TGCA 6 cut(s) 443, 562, 814, 1139, 1469, 1657
HpyF10VI GCNNNNNNNGC 3 cut(s) 1252, 1394, 1475
HpyF3I CTNAG 5 cut(s) 113, 333, 797, 1300, 1646
HpySE526I ACGT 1 cut(s) 571
Hsp92II CATG 7 cut(s) 134, 161, 204, 463, 1219, 1224, 1473
HspAI GCGC 2 cut(s) 1253, 1364
Ksp22I TGATCA 1 cut(s) 886
LmnI GCTCC 3 cut(s) 433, 1142, 1385
Lsp1109I GCAGC 3 cut(s) 357, 577, 610
LweI GCATC 2 cut(s) 871, 1660
MaeI CTAG 3 cut(s) 207, 1247, 1268
MaeII ACGT 1 cut(s) 571
MaeIII GTNAC 9 cut(s) 32, 43, 381, 400, 523, 1018, 1226, 1409, 1577
MfeI CAATTG 1 cut(s) 1332
MflI RGATCY 2 cut(s) 1339, 1507
MhlI GDGCHC 5 cut(s) 112, 145, 430, 682, 1390
MlyI GAGTC 2 cut(s) 782, 1534
MmeI TCCRAC 2 cut(s) 1500, 1645
MseI TTAA 6 cut(s) 375, 852, 962, 1160, 1307, 1500
MslI CAYNNNNRTG 3 cut(s) 156, 503, 786
MspI CCGG 2 cut(s) 1031, 1416
MspR9I CCNGG 1 cut(s) 1031
MunI CAATTG 1 cut(s) 1332
MwoI GCNNNNNNNGC 3 cut(s) 1252, 1394, 1475
NciI CCSGG 1 cut(s) 1031
NlaIII CATG 7 cut(s) 134, 161, 204, 463, 1219, 1224, 1473
NlaIV GGNNCC 1 cut(s) 1144
NmuCI GTSAC 3 cut(s) 43, 381, 1018
NspV TTCGAA 1 cut(s) 252
OliI CACNNNNGTG 1 cut(s) 503
PagI TCATGA 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 1377
PfeI GAWTC 4 cut(s) 91, 101, 467, 761
PkrI GCNGC 3 cut(s) 372, 592, 625
PleI GAGTC 2 cut(s) 781, 1533
PpsI GAGTC 2 cut(s) 781, 1533
PsiI TTATAA 1 cut(s) 599
Psp124BI GAGCTC 1 cut(s) 1390
PspN4I GGNNCC 1 cut(s) 1144
PspPI GGNCC 2 cut(s) 1312, 1418
PsuI RGATCY 2 cut(s) 1339, 1507
RsaI GTAC 2 cut(s) 338, 478
RsaNI GTAC 2 cut(s) 337, 477
RseI CAYNNNNRTG 3 cut(s) 156, 503, 786
Rsr2I CGGWCCG 1 cut(s) 1418
RsrII CGGWCCG 1 cut(s) 1418
SacI GAGCTC 1 cut(s) 1390
SaqAI TTAA 6 cut(s) 375, 852, 962, 1160, 1307, 1500
SatI GCNGC 3 cut(s) 371, 591, 624
Sau96I GGNCC 2 cut(s) 1312, 1418
ScaI AGTACT 1 cut(s) 338
SchI GAGTC 2 cut(s) 782, 1534
ScrFI CCNGG 1 cut(s) 1031
SduI GDGCHC 5 cut(s) 112, 145, 430, 682, 1390
SfaNI GCATC 2 cut(s) 871, 1660
SfcI CTRYAG 1 cut(s) 972
SfuI TTCGAA 1 cut(s) 252
SinI GGWCC 2 cut(s) 1312, 1418
SmiMI CAYNNNNRTG 3 cut(s) 156, 503, 786
SmlI CTYRAG 3 cut(s) 770, 827, 1389
SmoI CTYRAG 3 cut(s) 770, 827, 1389
SsiI CCGC 2 cut(s) 1063, 1085
SspMI CTAG 3 cut(s) 207, 1247, 1268
SstI GAGCTC 1 cut(s) 1390
StyD4I CCNGG 1 cut(s) 1029
StyI CCWWGG 2 cut(s) 953, 1187
TaaI ACNGT 9 cut(s) 26, 43, 245, 391, 502, 824, 1312, 1583, 1663
TaiI ACGT 1 cut(s) 574
TaqI TCGA 4 cut(s) 191, 222, 252, 1295
TaqII GACCGA 1 cut(s) 1006
TatI WGTACW 1 cut(s) 336
TfiI GAWTC 4 cut(s) 91, 101, 467, 761
Tru1I TTAA 6 cut(s) 375, 852, 962, 1160, 1307, 1500
Tru9I TTAA 6 cut(s) 375, 852, 962, 1160, 1307, 1500
TscAI CASTG 1 cut(s) 505
TseFI GTSAC 3 cut(s) 43, 381, 1018
TseI GCWGC 3 cut(s) 370, 590, 623
Tsp45I GTSAC 3 cut(s) 43, 381, 1018
TspDTI ATGAA 6 cut(s) 146, 336, 448, 684, 1123, 1626
TspGWI ACGGA 1 cut(s) 1473
TspRI CASTG 1 cut(s) 505
VpaK11BI GGWCC 2 cut(s) 1312, 1418
XcmI CCANNNNNNNNNTGG 2 cut(s) 1173, 1357
XspI CTAG 3 cut(s) 207, 1247, 1268
ZrmI AGTACT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.