RLG00000022568

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
3947183 .. 3948958
1776 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022568

Sequence Viewer

Length: 1605 bp
ATGGTTGAGGTTCTGATGAAAACCTTATTTGTTTCCATACCTATACCTCTTTACAGAAACTATATCATTTTCTTGAATCTCTCTTTTCTCTTAGTGGCTTCTACTATCCTGGTTATATACAATTCCCTCTCTTCACAAATTCTAGTTCTACGCATTCACAGCGATATTAATGAGAAAGGCTGCGAGGGTTTTCTTAGTATAGCTTCCGAGTACTTTTGTTCTTCACTTGAGAGTCTATCAAGGCTTTTACAATTGTCCCCTACAATTGCTGGGGTTACTCTTCTCTCCCTTGGCAATGGAGCCCCTGATGTCTTCTCCAGTTTTGTTTCATTTATGGGTAGTGGTGGGACGAACATTGATGTTGGTCTCAACACAATTCTGGGAGGTGCCTCCTTTATATCCTGTGTTGTGGTTGGAATCATAAGCATTTCAATTCGCAAAAGGCTTGTTCGAGTTGACAAATCTGACTTCGTTCGAGACACCTCCTTCTACCTTTTGGTTATCGTGTGCTTGATTCTGATCTTGATTCAGAAAGAAATAGATGTGTGGGCTGCTGTGGCTTTCTCTTCACTTTATATTGTTTATGTGATTGGGGTTTACGTATCACATACGCATAGGCGGAATTCTGGTAAAACAAGTGAATCACACAGTAATTTGAGCAACGGTGGTCATGACTTGACAGTACCAATCATGAGTAGCATGGAGAGGGATGGAAATGAAGAGCTTAGTGCTGCAGAGGAAGGAGCCTTAGAACACATTTCTGCCGTAGAAGAAGTCAAGAAAGGCTGCTTTCAACTCCCCCGACCATCAGATTCTTGTCAAATGTTGATCTTCATGCTTGAGTTGCCTCTTTATATTCCTAGGAGATTGACAATTCCTGTCGTTTGTGAAGAGAGATGGTCTAAACCATATGCAGTTGCTTCTGTGACACTAGCACCAGTGCTATTGTCATCCCTTTGGAACCATCAGTATGCAGACGCTACCTTCGAGACTAGCCTTTGGATCTATTTGATTGGATCGATTATTGGACTAGTTTTCGGGTTTGTTGCATGTTTGACAACAGAGAAGTCAAGCCCACCAAAGAAATGCTTATTTCCTTGGCTTGCTGCTGGCTTCTTGATGAGTGTTACTTGGAGTTACATTACAGCTCAGGAACTTGTGGCCTTGTTAGTCTCAATAGGGTACATATTAGGTGTTAGTCCTTCAATATTAGGACTAACAGTCCTTGCTTGGGGTAATTCACTTGGGGATTTGATAACCAATTTGACCATGGCTTTGAATGGAGGACCAGATGGAGCACAGATTGCCTTTTCTGCCTGTTATGCTGGTCCTATCTTCAACACTCTCTTTGGATTGGGGCTATCATTTGTTGGCTCTTCTTGGTCGAAATACCCTTCAGCTGTTGTTATTAATGGAGATCCACACCTCTTGGAGACGTTGGGTTTGTTGGCAGGAGGCTTGCTATGGGCACTTGTGGTGTTGCAAAGAAGAGATATGATCCTTGATGGGGTCTTGGGGGGCGGTCTTTTAGTTATATACACCATTTCTGTGTCTTTGAGGTTAATTCAAACACTTGGGTCTCTCCAGCTACAAACAGAGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

535

Amino Acids

57.82

Weight (kDa)

5.43

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 64 - 200 1.1e-23 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 368 - 519 4.9e-24 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 386
AciI CCGC 2 cut(s) 619, 1521
AclWI GGATC 4 cut(s) 1010, 1024, 1412, 1492
AcsI RAATTY 2 cut(s) 138, 622
AcuI CTGAAG 1 cut(s) 1380
AfaI GTAC 3 cut(s) 212, 684, 1184
AfiI CCNNNNNNNGG 2 cut(s) 1231, 1507
AgsI TTSAA 7 cut(s) 76, 432, 794, 1206, 1279, 1339, 1568
AhdI GACNNNNNGTC 1 cut(s) 1220
AhlI ACTAGT 1 cut(s) 1030
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 5 cut(s) 203, 724, 1148, 1400, 1588
AluI AGCT 5 cut(s) 203, 724, 1148, 1400, 1588
Alw21I GWGCWC 1 cut(s) 1300
Alw26I GTCTC 6 cut(s) 371, 471, 983, 1177, 1427, 1584
AlwI GGATC 4 cut(s) 1010, 1024, 1412, 1492
AoxI GGCC 1 cut(s) 1161
ApeKI GCWGC 5 cut(s) 180, 551, 731, 786, 1106
ApoI RAATTY 2 cut(s) 138, 622
ArsI GACNNNNNNTTYG 6 cut(s) 968, 1000, 1258, 1290, 1426, 1458
AseI ATTAAT 2 cut(s) 168, 1410
AspA2I CCTAGG 1 cut(s) 860
AspS9I GGNCC 2 cut(s) 1286, 1328
AvaII GGWCC 2 cut(s) 1286, 1328
AvrII CCTAGG 1 cut(s) 860
BaeGI GKGCMC 1 cut(s) 1471
BanI GGYRCC 1 cut(s) 386
BanII GRGCYC 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 1300
BbvI GCAGC 5 cut(s) 167, 538, 718, 773, 1093
BccI CCATC 6 cut(s) 704, 814, 891, 972, 1286, 1499
BceAI ACGGC 1 cut(s) 749
BciT130I CCWGG 1 cut(s) 110
BcoDI GTCTC 6 cut(s) 371, 471, 983, 1177, 1427, 1584
BcuI ACTAGT 1 cut(s) 1030
BfaI CTAG 5 cut(s) 143, 861, 932, 993, 1031
BfmI CTRYAG 1 cut(s) 732
BisI GCNGC 5 cut(s) 181, 552, 732, 787, 1107
BlnI CCTAGG 1 cut(s) 860
BlsI GCNGC 5 cut(s) 182, 553, 733, 788, 1108
BmcAI AGTACT 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 2 cut(s) 1286, 1328
BmeRI GACNNNNNGTC 1 cut(s) 1220
BmgT120I GGNCC 2 cut(s) 1286, 1328
BmiI GGNNCC 4 cut(s) 301, 388, 745, 962
BmrFI CCNGG 1 cut(s) 110
BpiI GAAGAC 1 cut(s) 304
BpmI CTGGAG 2 cut(s) 301, 1568
Bpu10I CCTNAGC 1 cut(s) 1149
BpuEI CTTGAG 2 cut(s) 248, 860
Bsa29I ATCGAT 1 cut(s) 1019
BsaAI YACGTR 1 cut(s) 601
BsaBI GATNNNNATC 1 cut(s) 518
BsaI GGTCTC 2 cut(s) 371, 1584
BsaJI CCNNGG 4 cut(s) 289, 860, 1097, 1269
Bsc4I CCNNNNNNNGG 2 cut(s) 1231, 1507
Bse1I ACTGG 2 cut(s) 318, 938
Bse3DI GCAATG 1 cut(s) 301
Bse8I GATNNNNATC 1 cut(s) 518
BseBI CCWGG 1 cut(s) 110
BseCI ATCGAT 1 cut(s) 1019
BseDI CCNNGG 4 cut(s) 289, 860, 1097, 1269
BseGI GGATG 2 cut(s) 715, 950
BseJI GATNNNNATC 1 cut(s) 518
BseLI CCNNNNNNNGG 2 cut(s) 1231, 1507
BseMI GCAATG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 1163
BseNI ACTGG 2 cut(s) 318, 938
BseSI GKGCMC 1 cut(s) 1471
BseXI GCAGC 5 cut(s) 167, 538, 718, 773, 1093
BseYI CCCAGC 1 cut(s) 269
BshFI GGCC 1 cut(s) 1163
BshNI GGYRCC 1 cut(s) 386
BshVI ATCGAT 1 cut(s) 1019
BsiHKAI GWGCWC 1 cut(s) 1300
BslFI GGGAC 2 cut(s) 241, 361
BslI CCNNNNNNNGG 2 cut(s) 1231, 1507
BsmAI GTCTC 6 cut(s) 371, 471, 983, 1177, 1427, 1584
BsmBI CGTCTC 1 cut(s) 1427
BsmFI GGGAC 2 cut(s) 241, 361
BsmI GAATGC 1 cut(s) 153
BsnI GGCC 1 cut(s) 1163
Bso31I GGTCTC 2 cut(s) 371, 1584
Bsp1286I GDGCHC 3 cut(s) 304, 1300, 1471
Bsp143I GATC 6 cut(s) 519, 828, 1002, 1016, 1417, 1497
Bsp19I CCATGG 1 cut(s) 1269
BspACI CCGC 2 cut(s) 619, 1521
BspANI GGCC 1 cut(s) 1163
BspCNI CTCAG 1 cut(s) 1162
BspDI ATCGAT 1 cut(s) 1019
BspHI TCATGA 2 cut(s) 670, 690
BspLI GGNNCC 4 cut(s) 301, 388, 745, 962
BspMAI CTGCAG 1 cut(s) 736
BspPI GGATC 4 cut(s) 1010, 1024, 1412, 1492
BspQI GCTCTTC 2 cut(s) 714, 1381
BspT107I GGYRCC 1 cut(s) 386
BspTNI GGTCTC 2 cut(s) 371, 1584
BsrDI GCAATG 1 cut(s) 301
BsrI ACTGG 2 cut(s) 318, 938
BssECI CCNNGG 4 cut(s) 289, 860, 1097, 1269
BssMI GATC 6 cut(s) 519, 828, 1002, 1016, 1417, 1497
BssT1I CCWWGG 4 cut(s) 289, 860, 1097, 1269
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 4 cut(s) 650, 665, 682, 1222
Bst6I CTCTTC 7 cut(s) 136, 285, 571, 714, 885, 1381, 1483
BstAPI GCANNNNNTGC 1 cut(s) 1304
BstBAI YACGTR 1 cut(s) 601
BstC8I GCNNGC 3 cut(s) 1104, 1111, 1460
BstDEI CTNAG 5 cut(s) 91, 194, 725, 748, 1149
BstDSI CCRYGG 1 cut(s) 1269
BstF5I GGATG 2 cut(s) 715, 950
BstKTI GATC 6 cut(s) 522, 831, 1005, 1019, 1420, 1500
BstMAI GTCTC 6 cut(s) 371, 471, 983, 1177, 1427, 1584
BstMBI GATC 6 cut(s) 519, 828, 1002, 1016, 1417, 1497
BstMWI GCNNNNNNNGC 6 cut(s) 159, 557, 844, 1304, 1313, 1322
BstNI CCWGG 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 1053
BstSCI CCNGG 1 cut(s) 108
BstSFI CTRYAG 1 cut(s) 732
BstSLI GKGCMC 1 cut(s) 1471
BstSNI TACGTA 1 cut(s) 601
BstV1I GCAGC 5 cut(s) 167, 538, 718, 773, 1093
BstV2I GAAGAC 1 cut(s) 304
BstX2I RGATCY 2 cut(s) 1002, 1417
BstYI RGATCY 2 cut(s) 1002, 1417
Bsu15I ATCGAT 1 cut(s) 1019
BsuRI GGCC 1 cut(s) 1163
BsuTUI ATCGAT 1 cut(s) 1019
BtgI CCRYGG 1 cut(s) 1269
BtsCI GGATG 2 cut(s) 715, 950
BtsIMutI CAGTG 1 cut(s) 945
Cac8I GCNNGC 3 cut(s) 1104, 1111, 1460
CciI TCATGA 2 cut(s) 670, 690
Cfr13I GGNCC 2 cut(s) 1286, 1328
ClaI ATCGAT 1 cut(s) 1019
CseI GACGC 1 cut(s) 986
Csp6I GTAC 3 cut(s) 211, 683, 1183
CspCI CAANNNNNGTGG 2 cut(s) 1410, 1445
CviAII CATG 6 cut(s) 671, 691, 700, 835, 1050, 1270
CviQI GTAC 3 cut(s) 211, 683, 1183
DdeI CTNAG 5 cut(s) 91, 194, 725, 748, 1149
DpnI GATC 6 cut(s) 521, 830, 1004, 1018, 1419, 1499
DpnII GATC 6 cut(s) 519, 828, 1002, 1016, 1417, 1497
DriI GACNNNNNGTC 1 cut(s) 1220
Eam1104I CTCTTC 7 cut(s) 136, 285, 571, 714, 885, 1381, 1483
Eam1105I GACNNNNNGTC 1 cut(s) 1220
EarI CTCTTC 7 cut(s) 136, 285, 571, 714, 885, 1381, 1483
EciI GGCGGA 1 cut(s) 634
Eco105I TACGTA 1 cut(s) 601
Eco130I CCWWGG 4 cut(s) 289, 860, 1097, 1269
Eco24I GRGCYC 1 cut(s) 304
Eco31I GGTCTC 2 cut(s) 371, 1584
Eco47I GGWCC 2 cut(s) 1286, 1328
Eco57I CTGAAG 1 cut(s) 1380
EcoRI GAATTC 1 cut(s) 622
EcoRII CCWGG 1 cut(s) 108
EcoT14I CCWWGG 4 cut(s) 289, 860, 1097, 1269
EcoT38I GRGCYC 1 cut(s) 304
ErhI CCWWGG 4 cut(s) 289, 860, 1097, 1269
Esp3I CGTCTC 1 cut(s) 1427
FaeI CATG 6 cut(s) 674, 694, 703, 838, 1053, 1273
FalI AAGNNNNNCTT 2 cut(s) 1073, 1105
FaqI GGGAC 2 cut(s) 241, 361
FatI CATG 6 cut(s) 670, 690, 699, 834, 1049, 1269
FauNDI CATATG 1 cut(s) 910
Fnu4HI GCNGC 5 cut(s) 181, 552, 732, 787, 1107
FokI GGATG 2 cut(s) 722, 937
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 5 cut(s) 181, 552, 732, 787, 1107
FspBI CTAG 5 cut(s) 143, 861, 932, 993, 1031
GluI GCNGC 5 cut(s) 181, 552, 732, 787, 1107
GsaI CCCAGC 1 cut(s) 273
GsuI CTGGAG 2 cut(s) 301, 1568
HaeIII GGCC 1 cut(s) 1163
HgaI GACGC 1 cut(s) 986
Hin1II CATG 6 cut(s) 674, 694, 703, 838, 1053, 1273
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HinfI GANTC 8 cut(s) 76, 232, 417, 514, 526, 641, 812, 1598
Hpy166II GTNNAC 2 cut(s) 457, 598
Hpy188I TCNGA 6 cut(s) 15, 208, 466, 519, 531, 811
Hpy188III TCNNGA 9 cut(s) 73, 476, 523, 671, 691, 778, 988, 1117, 1151
Hpy8I GTNNAC 2 cut(s) 457, 598
HpyAV CCTTC 5 cut(s) 496, 734, 994, 1212, 1404
HpyCH4III ACNGT 4 cut(s) 650, 665, 682, 1222
HpyCH4IV ACGT 2 cut(s) 600, 1436
HpyCH4V TGCA 5 cut(s) 734, 914, 974, 1049, 1483
HpyF10VI GCNNNNNNNGC 6 cut(s) 159, 557, 844, 1304, 1313, 1322
HpyF3I CTNAG 5 cut(s) 91, 194, 725, 748, 1149
HpySE526I ACGT 2 cut(s) 600, 1436
Hsp92II CATG 6 cut(s) 674, 694, 703, 838, 1053, 1273
Kzo9I GATC 6 cut(s) 519, 828, 1002, 1016, 1417, 1497
LguI GCTCTTC 2 cut(s) 714, 1381
LmnI GCTCC 3 cut(s) 299, 743, 1295
Lsp1109I GCAGC 5 cut(s) 167, 538, 718, 773, 1093
MaeI CTAG 5 cut(s) 143, 861, 932, 993, 1031
MaeII ACGT 2 cut(s) 600, 1436
MaeIII GTNAC 4 cut(s) 274, 925, 1126, 1136
MalI GATC 6 cut(s) 521, 830, 1004, 1018, 1419, 1499
MboI GATC 6 cut(s) 519, 828, 1002, 1016, 1417, 1497
MfeI CAATTG 2 cut(s) 251, 264
MflI RGATCY 2 cut(s) 1002, 1417
MhlI GDGCHC 3 cut(s) 304, 1300, 1471
MlyI GAGTC 1 cut(s) 241
MmeI TCCRAC 1 cut(s) 394
MseI TTAA 3 cut(s) 168, 1410, 1562
MslI CAYNNNNRTG 2 cut(s) 969, 1547
MspA1I CMGCKG 1 cut(s) 1400
MspR9I CCNGG 1 cut(s) 110
MunI CAATTG 2 cut(s) 251, 264
Mva1269I GAATGC 1 cut(s) 153
MvaI CCWGG 1 cut(s) 110
MwoI GCNNNNNNNGC 6 cut(s) 159, 557, 844, 1304, 1313, 1322
NcoI CCATGG 1 cut(s) 1269
NdeI CATATG 1 cut(s) 910
NdeII GATC 6 cut(s) 519, 828, 1002, 1016, 1417, 1497
NlaIII CATG 6 cut(s) 674, 694, 703, 838, 1053, 1273
NlaIV GGNNCC 4 cut(s) 301, 388, 745, 962
NmuCI GTSAC 1 cut(s) 925
NspI RCATGY 1 cut(s) 1053
PagI TCATGA 2 cut(s) 670, 690
PciSI GCTCTTC 2 cut(s) 714, 1381
PcsI WCGNNNNNNNCGW 1 cut(s) 984
PctI GAATGC 1 cut(s) 153
PfeI GAWTC 6 cut(s) 76, 417, 514, 526, 641, 812
PkrI GCNGC 5 cut(s) 182, 553, 733, 788, 1108
PleI GAGTC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 240
Ppu21I YACGTR 1 cut(s) 601
PshBI ATTAAT 2 cut(s) 168, 1410
Psp6I CCWGG 1 cut(s) 108
PspFI CCCAGC 1 cut(s) 269
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 4 cut(s) 301, 388, 745, 962
PspPI GGNCC 2 cut(s) 1286, 1328
PstI CTGCAG 1 cut(s) 736
PsuI RGATCY 2 cut(s) 1002, 1417
PvuII CAGCTG 1 cut(s) 1400
RsaI GTAC 3 cut(s) 212, 684, 1184
RsaNI GTAC 3 cut(s) 211, 683, 1183
RseI CAYNNNNRTG 2 cut(s) 969, 1547
SapI GCTCTTC 2 cut(s) 714, 1381
SaqAI TTAA 3 cut(s) 168, 1410, 1562
SatI GCNGC 5 cut(s) 181, 552, 732, 787, 1107
Sau3AI GATC 6 cut(s) 519, 828, 1002, 1016, 1417, 1497
Sau96I GGNCC 2 cut(s) 1286, 1328
ScaI AGTACT 1 cut(s) 212
SchI GAGTC 1 cut(s) 241
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 3 cut(s) 304, 1300, 1471
SfcI CTRYAG 1 cut(s) 732
SinI GGWCC 2 cut(s) 1286, 1328
SmiMI CAYNNNNRTG 2 cut(s) 969, 1547
SmlI CTYRAG 2 cut(s) 227, 839
SmoI CTYRAG 2 cut(s) 227, 839
SnaBI TACGTA 1 cut(s) 601
SpeI ACTAGT 1 cut(s) 1030
SsiI CCGC 2 cut(s) 619, 1521
SspI AATATT 1 cut(s) 1209
SspMI CTAG 5 cut(s) 143, 861, 932, 993, 1031
StyD4I CCNGG 1 cut(s) 108
StyI CCWWGG 4 cut(s) 289, 860, 1097, 1269
TaaI ACNGT 4 cut(s) 650, 665, 682, 1222
TaiI ACGT 2 cut(s) 603, 1439
TaqI TCGA 5 cut(s) 451, 475, 987, 1019, 1385
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 6 cut(s) 76, 417, 514, 526, 641, 812
Tru1I TTAA 3 cut(s) 168, 1410, 1562
Tru9I TTAA 3 cut(s) 168, 1410, 1562
TscAI CASTG 1 cut(s) 945
TseFI GTSAC 1 cut(s) 925
TseI GCWGC 5 cut(s) 180, 551, 731, 786, 1106
Tsp45I GTSAC 1 cut(s) 925
TspDTI ATGAA 4 cut(s) 32, 318, 732, 823
TspRI CASTG 1 cut(s) 945
VpaK11BI GGWCC 2 cut(s) 1286, 1328
VspI ATTAAT 2 cut(s) 168, 1410
XapI RAATTY 2 cut(s) 138, 622
XceI RCATGY 1 cut(s) 1053
XcmI CCANNNNNNNNNTGG 1 cut(s) 1267
XmaJI CCTAGG 1 cut(s) 860
XspI CTAG 5 cut(s) 143, 861, 932, 993, 1031
ZrmI AGTACT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.