FvH4_2g05650

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0009055
Physical Location & Seq
Forward (+)
4614016 .. 4615227
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g05650.t1

Sequence Viewer

Length: 900 bp
ATGGAGAGGGATGAAAGTGAAGAGCTTGGTGCTGCAGAGGACGGAGCTTTAACTTGTGCCGTAGAAGAAGTAAAGAAAAGCTGCTATCAACTCCCCCGGCCATCAGATTCTTGTCGAATGTTGATCTTCGTACTTGAGTTACCTCTGTATGTTCCCAGGAGATTGACGATTCCCGTTGTTTGTGAAGAGAGATGGTCTAAGCCTTATGATGTTGCGTCTGTGACACTAGCGCCTGTGCTATTGTCATCCCTTTGGAACCATCAGTATGCAAACGCTAGCTTTCAGAAAAGCCTCTTGATCTATGTGATTGGATTGATTATTGGACTAGTTTTGGGACTTGTTGCATGTATGACAACAGAGAAGTCAAGCCCACCAAAGAAATGCTTACTTCCTTGGCTTGCTGCTGGCTTCTTGATGAGTGTTACTTGGAGTTACATTACAGCTCAGGAACTGGTGGCGTTGTTAGTCTCAACAGGGTATATATTAGGTATTAGTCCTTCGATATTAGGACTGACAGTCCTTGCTTGGGGTAATTCACTTGGGGATTTGATAACCAATTTGACCATGGCGTTGAATGGAGGACCAGAAGGAGCACAGACTGCCTTTTCTGCCTGTTATGCTGGTCCTATCTTCAACACTCTGTTTGGATTGGGGCTGTCACTTGTTGGCTCTTCTTGGTCTAAATACCCTTCTGCTGTTGTCATTCATGGAGATCCATACCTCATGGAGACACTGGGTTTGTTAGGAGGAGGCTTGCTTTGGGCACTTGTGGTGTTGCCAAGGAGAGATATGACCCTTGATGGGGTTTTGGGGGTCGGTCTTTTAGTTATATACATCATTTCTATGTCTTTGAGGTTAATTCAAACACTCGGGTCTCTGCAACTACAAACAGAGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_Ca_ex

Protein Analysis

300

Amino Acids

32.23

Weight (kDa)

4.99

Isoelectric Point (pI)

50.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 133 - 284 1.5e-25 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 707
AcoI YGGCCR 1 cut(s) 98
AfaI GTAC 1 cut(s) 132
AfiI CCNNNNNNNGG 3 cut(s) 526, 801, 802
AgsI TTSAA 3 cut(s) 574, 634, 863
AhdI GACNNNNNGTC 1 cut(s) 515
AhlI ACTAGT 1 cut(s) 325
AjnI CCWGG 1 cut(s) 155
AluBI AGCT 5 cut(s) 25, 47, 81, 279, 443
AluI AGCT 5 cut(s) 25, 47, 81, 279, 443
Alw21I GWGCWC 1 cut(s) 595
Alw26I GTCTC 3 cut(s) 472, 722, 879
AlwI GGATC 1 cut(s) 707
AlwNI CAGNNNCTG 1 cut(s) 451
Ama87I CYCGRG 1 cut(s) 869
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 3 cut(s) 32, 81, 401
ArsI GACNNNNNNTTYG 2 cut(s) 721, 753
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 2 cut(s) 581, 623
AsuC2I CCSGG 1 cut(s) 97
AsuNHI GCTAGC 1 cut(s) 275
AvaI CYCGRG 1 cut(s) 869
AvaII GGWCC 2 cut(s) 581, 623
BaeGI GKGCMC 1 cut(s) 766
BarI GAAGNNNNNNTAC 2 cut(s) 481, 513
Bbv12I GWGCWC 1 cut(s) 595
BbvI GCAGC 3 cut(s) 19, 68, 388
BccI CCATC 4 cut(s) 109, 186, 267, 794
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 157
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 3 cut(s) 472, 722, 879
BcuI ACTAGT 1 cut(s) 325
BfaI CTAG 3 cut(s) 227, 276, 326
BfmI CTRYAG 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 233
BisI GCNGC 3 cut(s) 33, 82, 402
BlsI GCNGC 3 cut(s) 34, 83, 403
Bme1390I CCNGG 2 cut(s) 97, 157
Bme18I GGWCC 2 cut(s) 581, 623
BmeRI GACNNNNNGTC 1 cut(s) 515
BmeT110I CYCGRG 1 cut(s) 869
BmgT120I GGNCC 2 cut(s) 581, 623
BmiI GGNNCC 1 cut(s) 257
BmrFI CCNGG 2 cut(s) 97, 157
BmrI ACTGGG 1 cut(s) 743
BmtI GCTAGC 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 743
Bpu10I CCTNAGC 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 97
BsaI GGTCTC 1 cut(s) 879
BsaJI CCNNGG 5 cut(s) 95, 155, 392, 564, 779
Bsc4I CCNNNNNNNGG 3 cut(s) 526, 801, 802
Bse1I ACTGG 2 cut(s) 456, 738
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 5 cut(s) 95, 155, 392, 564, 779
BseGI GGATG 2 cut(s) 16, 245
BseLI CCNNNNNNNGG 3 cut(s) 526, 801, 802
BseMII CTCAG 1 cut(s) 458
BseNI ACTGG 2 cut(s) 456, 738
BseRI GAGGAG 1 cut(s) 762
BseSI GKGCMC 1 cut(s) 766
BseXI GCAGC 3 cut(s) 19, 68, 388
BshFI GGCC 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 595
BsiHKCI CYCGRG 1 cut(s) 869
BsiSI CCGG 1 cut(s) 97
BslFI GGGAC 1 cut(s) 348
BslI CCNNNNNNNGG 3 cut(s) 526, 801, 802
BsmAI GTCTC 3 cut(s) 472, 722, 879
BsmFI GGGAC 1 cut(s) 348
BsnI GGCC 1 cut(s) 100
Bso31I GGTCTC 1 cut(s) 879
BsoBI CYCGRG 1 cut(s) 869
Bsp1286I GDGCHC 2 cut(s) 595, 766
Bsp143I GATC 3 cut(s) 123, 297, 712
Bsp19I CCATGG 1 cut(s) 564
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 1 cut(s) 457
BspLI GGNNCC 1 cut(s) 257
BspMAI CTGCAG 1 cut(s) 37
BspOI GCTAGC 1 cut(s) 279
BspPI GGATC 1 cut(s) 707
BspQI GCTCTTC 2 cut(s) 15, 676
BspTNI GGTCTC 1 cut(s) 879
BsrI ACTGG 2 cut(s) 456, 738
BssECI CCNNGG 5 cut(s) 95, 155, 392, 564, 779
BssMI GATC 3 cut(s) 123, 297, 712
BssT1I CCWWGG 3 cut(s) 392, 564, 779
Bst2UI CCWGG 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 517
Bst6I CTCTTC 3 cut(s) 15, 180, 676
BstAPI GCANNNNNTGC 1 cut(s) 599
BstC8I GCNNGC 4 cut(s) 277, 399, 406, 755
BstDEI CTNAG 2 cut(s) 198, 444
BstDSI CCRYGG 1 cut(s) 564
BstF5I GGATG 2 cut(s) 16, 245
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 3 cut(s) 126, 300, 715
BstMAI GTCTC 3 cut(s) 472, 722, 879
BstMBI GATC 3 cut(s) 123, 297, 712
BstMWI GCNNNNNNNGC 3 cut(s) 599, 608, 617
BstNI CCWGG 1 cut(s) 157
BstNSI RCATGY 1 cut(s) 348
BstSCI CCNGG 2 cut(s) 95, 155
BstSFI CTRYAG 1 cut(s) 33
BstSLI GKGCMC 1 cut(s) 766
BstV1I GCAGC 3 cut(s) 19, 68, 388
BstX2I RGATCY 1 cut(s) 712
BstYI RGATCY 1 cut(s) 712
BsuRI GGCC 1 cut(s) 100
BtgI CCRYGG 1 cut(s) 564
BtsCI GGATG 2 cut(s) 16, 245
BtsIMutI CAGTG 1 cut(s) 731
Cac8I GCNNGC 4 cut(s) 277, 399, 406, 755
CaiI CAGNNNCTG 1 cut(s) 451
CfoI GCGC 1 cut(s) 232
Cfr13I GGNCC 2 cut(s) 581, 623
CseI GACGC 1 cut(s) 204
Csp6I GTAC 1 cut(s) 131
CviAII CATG 4 cut(s) 345, 565, 707, 724
CviQI GTAC 1 cut(s) 131
DdeI CTNAG 2 cut(s) 198, 444
DpnI GATC 3 cut(s) 125, 299, 714
DpnII GATC 3 cut(s) 123, 297, 712
DriI GACNNNNNGTC 1 cut(s) 515
EaeI YGGCCR 1 cut(s) 98
Eam1104I CTCTTC 3 cut(s) 15, 180, 676
Eam1105I GACNNNNNGTC 1 cut(s) 515
EarI CTCTTC 3 cut(s) 15, 180, 676
Eco130I CCWWGG 3 cut(s) 392, 564, 779
Eco31I GGTCTC 1 cut(s) 879
Eco47I GGWCC 2 cut(s) 581, 623
Eco88I CYCGRG 1 cut(s) 869
EcoRII CCWGG 1 cut(s) 155
EcoT14I CCWWGG 3 cut(s) 392, 564, 779
ErhI CCWWGG 3 cut(s) 392, 564, 779
FaeI CATG 4 cut(s) 348, 568, 710, 727
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FaqI GGGAC 1 cut(s) 348
FatI CATG 4 cut(s) 344, 564, 706, 723
Fnu4HI GCNGC 3 cut(s) 33, 82, 402
FokI GGATG 2 cut(s) 23, 232
Fsp4HI GCNGC 3 cut(s) 33, 82, 402
FspBI CTAG 3 cut(s) 227, 276, 326
GlaI GCGC 1 cut(s) 231
GluI GCNGC 3 cut(s) 33, 82, 402
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 1 cut(s) 100
HapII CCGG 1 cut(s) 97
HgaI GACGC 1 cut(s) 204
HhaI GCGC 1 cut(s) 232
Hin1II CATG 4 cut(s) 348, 568, 710, 727
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HinfI GANTC 2 cut(s) 107, 169
HpaII CCGG 1 cut(s) 97
Hpy188I TCNGA 2 cut(s) 106, 285
Hpy188III TCNNGA 3 cut(s) 295, 412, 446
HpyAV CCTTC 3 cut(s) 507, 581, 699
HpyCH4III ACNGT 1 cut(s) 517
HpyCH4V TGCA 4 cut(s) 35, 269, 344, 880
HpyF10VI GCNNNNNNNGC 3 cut(s) 599, 608, 617
HpyF3I CTNAG 2 cut(s) 198, 444
Hsp92II CATG 4 cut(s) 348, 568, 710, 727
HspAI GCGC 1 cut(s) 230
Kzo9I GATC 3 cut(s) 123, 297, 712
LguI GCTCTTC 2 cut(s) 15, 676
LmnI GCTCC 2 cut(s) 44, 590
Lsp1109I GCAGC 3 cut(s) 19, 68, 388
MaeI CTAG 3 cut(s) 227, 276, 326
MaeIII GTNAC 5 cut(s) 138, 220, 421, 431, 657
MalI GATC 3 cut(s) 125, 299, 714
MboI GATC 3 cut(s) 123, 297, 712
MboII GAAGA 6 cut(s) 32, 77, 118, 197, 622, 663
MflI RGATCY 1 cut(s) 712
MhlI GDGCHC 2 cut(s) 595, 766
MluCI AATT 3 cut(s) 532, 556, 858
MnlI CCTC 8 cut(s) 31, 153, 302, 572, 731, 740, 743, 846
MseI TTAA 2 cut(s) 50, 857
MslI CAYNNNNRTG 2 cut(s) 264, 842
MspI CCGG 1 cut(s) 97
MspR9I CCNGG 2 cut(s) 97, 157
MvaI CCWGG 1 cut(s) 157
MwoI GCNNNNNNNGC 3 cut(s) 599, 608, 617
NciI CCSGG 1 cut(s) 97
NcoI CCATGG 1 cut(s) 564
NdeII GATC 3 cut(s) 123, 297, 712
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 4 cut(s) 348, 568, 710, 727
NlaIV GGNNCC 1 cut(s) 257
NmuCI GTSAC 2 cut(s) 220, 657
NspI RCATGY 1 cut(s) 348
PciSI GCTCTTC 2 cut(s) 15, 676
PfeI GAWTC 2 cut(s) 107, 169
PkrI GCNGC 3 cut(s) 34, 83, 403
Psp6I CCWGG 1 cut(s) 155
PspGI CCWGG 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 257
PspPI GGNCC 2 cut(s) 581, 623
PstI CTGCAG 1 cut(s) 37
PstNI CAGNNNCTG 1 cut(s) 451
PsuI RGATCY 1 cut(s) 712
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
RseI CAYNNNNRTG 2 cut(s) 264, 842
SapI GCTCTTC 2 cut(s) 15, 676
SaqAI TTAA 2 cut(s) 50, 857
SatI GCNGC 3 cut(s) 33, 82, 402
Sau3AI GATC 3 cut(s) 123, 297, 712
Sau96I GGNCC 2 cut(s) 581, 623
ScrFI CCNGG 2 cut(s) 97, 157
SduI GDGCHC 2 cut(s) 595, 766
SetI ASST 9 cut(s) 27, 49, 83, 145, 281, 445, 490, 723, 857
SfcI CTRYAG 1 cut(s) 33
SinI GGWCC 2 cut(s) 581, 623
SmiMI CAYNNNNRTG 2 cut(s) 264, 842
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SpeI ACTAGT 1 cut(s) 325
Sse9I AATT 3 cut(s) 532, 556, 858
SspMI CTAG 3 cut(s) 227, 276, 326
StyD4I CCNGG 2 cut(s) 95, 155
StyI CCWWGG 3 cut(s) 392, 564, 779
TaaI ACNGT 1 cut(s) 517
TaqI TCGA 2 cut(s) 115, 500
TaqII GACCGA 1 cut(s) 806
TasI AATT 3 cut(s) 532, 556, 858
TfiI GAWTC 2 cut(s) 107, 169
Tru1I TTAA 2 cut(s) 50, 857
Tru9I TTAA 2 cut(s) 50, 857
TscAI CASTG 1 cut(s) 738
TseFI GTSAC 2 cut(s) 220, 657
TseI GCWGC 3 cut(s) 32, 81, 401
Tsp45I GTSAC 2 cut(s) 220, 657
TspDTI ATGAA 2 cut(s) 27, 695
TspGWI ACGGA 1 cut(s) 57
TspRI CASTG 1 cut(s) 738
VpaK11BI GGWCC 2 cut(s) 581, 623
XceI RCATGY 1 cut(s) 348
XcmI CCANNNNNNNNNTGG 1 cut(s) 562
XspI CTAG 3 cut(s) 227, 276, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.