Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0009055

Physical Location & Seq

Genomic Coordinates Reverse (-)

1218407 .. 1220122

Gene Structure 1716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1011800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1716 bp

ATGGGCACCTTAGTTTTCTTACCAAAGTACAAAAATTACATAATTTTCTTGAACATCTCGTTTCTGCTAGTGGGATGTGCTTTCTTGATTGTACATTTTGAAGCTTCAGATTTTCCGGTTCTAAGCACTTCTGGGATTTCCAGATTTTCTGGTTCACTAGATTGCAAGGGTTTTCTTAGTTTAGATGACTACAAAGCAAAGTGCTTTCACCTTAAATCCAAAAACCCATGTGTCTCCCAAGGCTATATAAACTATCTTAACATTTTCTACTGCAAGTTTGGAACTTTTCCTCAATTGGGTTATTGCTGTATGTTTCTTTGGCTTCTGGTTTTGTTCTATTTGATGGGAAACACAGCTTCTGAGTACTTTTGTTCTTCACTTGATAGTTTATCTAGGCTGTTAAAATTGTCCCCTACAATTGCTGGGGTAACTCTGCTTTCTCTTGGCAATGGAGCCAATGATGTTTTTTCCAGTCTTGTTTCGTTTATGGGTGGCGGGACGGGCGAAATCGGTCTTAATACAATTTTGGGTGGTGCTTCTTTTGTGTCGTGTGTTGTGGTTGGAATCTTAAGCATTTCGATGCGCAAAAGGCGCATTCGAGTTAACAAATCGGACTTTGTGAGAGATATTTGCTTCTACCTATTGGTCATTGTATGTTTGGGTGTTATCTTGATTCGCAAGGAAATAGATGTGTGGGCTGCAATGGCTTTCTCTTCACTCTATATTGTCTATGTGATTGTGGTTTACGTCTCACACACTCGTCGGAAGAAATGCTTTGAATTGAGCTGTAATTCGAGCAATGAGAGTGACTTGACTGTGCCAATTCTTAGCAGCATTGAAGAGGAAGATCTCAGTGCTGCAGAGGAAGGAGCTGCACAAGGCAGTTCTGAAGTAGTACAAGTCAAGAAATGCTGCTCTAATCTTATATCATCAGCTTTTTTTCGCACGCTAATTTTCATACTTGAGCTGCCGCTTTATCTGCCCAGGAGATTGACTATTCCTGTAGTTTGTGAAGAAAGATGGTGTAAGCCATATGCAGTTGCTTCAGTGACACTAGCACCAGTGCTTTTGTCAACACTTTGGAACCATCAATTTGGAAATGTTAGCTTCAAGACGAAGCTTGCAATCTATATTATTGGATTGGTTTTTGGAATCACTTTTGGGATTGTTGCTTTTTTTACAACTGAGAAGTCAAGCCCACCCAAAAAGTGCTTAGTTCCTTGGCTTACTGCAGGGTTTGTAATGAGTATTACTTGGAGTTATCTTACAGCTCAAGAATTGGTAGGGTTGTTAGTTTCATTAGGGTACATATTAGGTGTGAGTCCTTCAATTTTAGGGCTAACAGTCCTTGCTTGGGGCAACTCACTTGGAGATTTGATAACCAATTTGACAATGGCTTTGAATGGTGGAACAAAGGGAGCTCAGATTGCATTTTCAGCATGTTATGCTGGCCCTATCTTCAACACTCTGTTTGGATTAGGGTTATCGCTTGTTGGCTCAGCTTGGTCTAAATTTCCATCACCCGTCTTGTTCCAGAGCGATCCATACCTCTTGGAGACGGTGTGTTTCTTGGCAGTCGGCTTGCTTTGGGCACTCGTGGTTTTACCGAGAAGAAGTATGATGCTTGATGGGGTGTTGGGAGCTGGGCTTTTGGTTGTGTACATCAGTTCCATGTCTTTGAGGTTGATTCGAACACTTGGGTCTGTAAAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

572

Amino Acids

62.43

Weight (kDa)

8.77

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_Ca_ex	PF01699	106 - 249	2.3e-24	Sodium/calcium exchanger protein
Na_Ca_ex	PF01699	409 - 556	1.9e-25	Sodium/calcium exchanger protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17850 AT5G17850
fragaria_vesca	FvH4_2g05650 FvH4_6g03400
malus_domestica	MD12G1011800.v1.1 MD14G1008300.v1.1 MD14G1008700.v1.1
prunus_persica	Prupe.7G015000_v2.0.a1 Prupe.7G015000_v2.0.a1
pyrus_communis	pycom12g00910 pycom14g00650 pycom14g00710
rosa_chinensis	RchiOBHm_Chr3g0496041
rosa_laevigata	RLG00000022568
rosa_multiflora	Rmu_sc0005781.1_g000025
rosa_roxburghii	Rroxscaffold_6G00389620
rosa_rugosa	Rorug03G0279200
rosa_samantha	Rh3AG326000 Rh3BG362400 Rh3CG358400 Rh3DG361800
rosa_wichuraiana	Rw3G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	584
AccB1I	GGYRCC	1 cut(s)	5
AciI	CCGC	2 cut(s)	495, 971
AclWI	GGATC	1 cut(s)	1535
AcsI	RAATTY	2 cut(s)	1511, 1709
AcuI	CTGAAG	3 cut(s)	90, 909, 1029
AfaI	GTAC	6 cut(s)	29, 93, 365, 897, 1307, 1661
AfiI	CCNNNNNNNGG	2 cut(s)	296, 1354
AflII	CTTAAG	1 cut(s)	568
AgsI	TTSAA	8 cut(s)	52, 101, 779, 839, 1111, 1329, 1402, 1462
AjnI	CCWGG	1 cut(s)	983
Alw21I	GWGCWC	1 cut(s)	1423
Alw26I	GTCTC	3 cut(s)	238, 754, 1550
AlwI	GGATC	1 cut(s)	1535
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	1450
ApeKI	GCWGC	6 cut(s)	698, 831, 857, 872, 912, 967
ApoI	RAATTY	2 cut(s)	1511, 1709
ArsI	GACNNNNNNTTYG	2 cut(s)	1381, 1413
AspLEI	GCGC	2 cut(s)	585, 594
AspS9I	GGNCC	1 cut(s)	1451
AsuHPI	GGTGA	2 cut(s)	200, 1512
AsuII	TTCGAA	1 cut(s)	1690
BaeGI	GKGCMC	2 cut(s)	8, 1594
BanI	GGYRCC	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	1423
BauI	CACGAG	1 cut(s)	1595
Bbv12I	GWGCWC	1 cut(s)	1423
BbvI	GCAGC	6 cut(s)	685, 843, 844, 859, 899, 954
BccI	CCATC	5 cut(s)	337, 1014, 1095, 1525, 1622
BciT130I	CCWGG	1 cut(s)	985
BcoDI	GTCTC	3 cut(s)	238, 754, 1550
BfaI	CTAG	4 cut(s)	68, 158, 393, 1055
BfmI	CTRYAG	3 cut(s)	858, 1002, 1230
BfrI	CTTAAG	1 cut(s)	568
BglII	AGATCT	1 cut(s)	847
BisI	GCNGC	7 cut(s)	699, 832, 858, 873, 913, 968, 971
BlpI	GCTNAGC	1 cut(s)	1498
BlsI	GCNGC	7 cut(s)	700, 833, 859, 874, 914, 969, 972
BmcAI	AGTACT	1 cut(s)	365
Bme1390I	CCNGG	1 cut(s)	985
BmgT120I	GGNCC	1 cut(s)	1451
BmiI	GGNNCC	3 cut(s)	7, 454, 1085
BmrFI	CCNGG	1 cut(s)	985
BmsI	GCATC	2 cut(s)	570, 1611
Bpu1102I	GCTNAGC	1 cut(s)	1498
Bpu14I	TTCGAA	1 cut(s)	1690
BpuEI	CTTGAG	2 cut(s)	983, 1257
BsaJI	CCNNGG	3 cut(s)	238, 983, 1220
BsaWI	WCCGGW	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	1547, 1577
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 1354
Bse1I	ACTGG	2 cut(s)	471, 1061
Bse3DI	GCAATG	3 cut(s)	454, 708, 805
BseBI	CCWGG	1 cut(s)	985
BseDI	CCNNGG	3 cut(s)	238, 983, 1220
BseGI	GGATG	1 cut(s)	80
BseLI	CCNNNNNNNGG	2 cut(s)	296, 1354
BseMI	GCAATG	3 cut(s)	454, 708, 805
BseMII	CTCAG	5 cut(s)	351, 865, 1176, 1436, 1512
BseNI	ACTGG	2 cut(s)	471, 1061
BseSI	GKGCMC	2 cut(s)	8, 1594
BseXI	GCAGC	6 cut(s)	685, 843, 844, 859, 899, 954
BseYI	CCCAGC	2 cut(s)	422, 1643
BsgI	GTGCAG	1 cut(s)	858
BshFI	GGCC	1 cut(s)	1452
BshNI	GGYRCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	1423
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	2 cut(s)	394, 511
BslI	CCNNNNNNNGG	2 cut(s)	296, 1354
BsmAI	GTCTC	3 cut(s)	238, 754, 1550
BsmBI	CGTCTC	2 cut(s)	754, 1550
BsmFI	GGGAC	2 cut(s)	394, 511
BsmI	GAATGC	1 cut(s)	594
BsnI	GGCC	1 cut(s)	1452
Bsp119I	TTCGAA	1 cut(s)	1690
Bsp1286I	GDGCHC	3 cut(s)	8, 1423, 1594
Bsp1407I	TGTACA	2 cut(s)	91, 1659
Bsp143I	GATC	2 cut(s)	847, 1540
Bsp1720I	GCTNAGC	1 cut(s)	1498
BspACI	CCGC	2 cut(s)	495, 971
BspANI	GGCC	1 cut(s)	1452
BspCNI	CTCAG	5 cut(s)	352, 864, 1177, 1435, 1511
BspLI	GGNNCC	3 cut(s)	7, 454, 1085
BspMAI	CTGCAG	2 cut(s)	862, 1234
BspPI	GGATC	1 cut(s)	1535
BspT104I	TTCGAA	1 cut(s)	1690
BspT107I	GGYRCC	1 cut(s)	5
BspTI	CTTAAG	1 cut(s)	568
BsrDI	GCAATG	3 cut(s)	454, 708, 805
BsrGI	TGTACA	2 cut(s)	91, 1659
BsrI	ACTGG	2 cut(s)	471, 1061
BssECI	CCNNGG	3 cut(s)	238, 983, 1220
BssMI	GATC	2 cut(s)	847, 1540
BssSI	CACGAG	1 cut(s)	1595
BssT1I	CCWWGG	2 cut(s)	238, 1220
Bst2BI	CACGAG	1 cut(s)	1595
Bst2UI	CCWGG	1 cut(s)	985
Bst4CI	ACNGT	3 cut(s)	817, 1345, 1561
Bst6I	CTCTTC	2 cut(s)	718, 834
BstAFI	CTTAAG	1 cut(s)	568
BstAPI	GCANNNNNTGC	1 cut(s)	1445
BstAUI	TGTACA	2 cut(s)	91, 1659
BstBI	TTCGAA	1 cut(s)	1690
BstC8I	GCNNGC	4 cut(s)	947, 1122, 1450, 1583
BstF5I	GGATG	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	585, 594
BstKTI	GATC	2 cut(s)	850, 1543
BstMAI	GTCTC	3 cut(s)	238, 754, 1550
BstMBI	GATC	2 cut(s)	847, 1540
BstMWI	GCNNNNNNNGC	8 cut(s)	501, 589, 591, 704, 979, 1427, 1436, 1445
BstNI	CCWGG	1 cut(s)	985
BstNSI	RCATGY	1 cut(s)	1443
BstSCI	CCNGG	1 cut(s)	983
BstSFI	CTRYAG	3 cut(s)	858, 1002, 1230
BstSLI	GKGCMC	2 cut(s)	8, 1594
BstV1I	GCAGC	6 cut(s)	685, 843, 844, 859, 899, 954
BstX2I	RGATCY	1 cut(s)	847
BstXI	CCANNNNNNTGG	1 cut(s)	1094
BstYI	RGATCY	1 cut(s)	847
BsuRI	GGCC	1 cut(s)	1452
BtsCI	GGATG	1 cut(s)	80
BtsIMutI	CAGTG	3 cut(s)	859, 1053, 1068
Cac8I	GCNNGC	4 cut(s)	947, 1122, 1450, 1583
CaiI	CAGNNNCTG	1 cut(s)	359
CfoI	GCGC	2 cut(s)	585, 594
Cfr13I	GGNCC	1 cut(s)	1451
Csp6I	GTAC	6 cut(s)	28, 92, 364, 896, 1306, 1660
CviAII	CATG	3 cut(s)	228, 1440, 1672
CviQI	GTAC	6 cut(s)	28, 92, 364, 896, 1306, 1660
DpnI	GATC	2 cut(s)	849, 1542
DpnII	GATC	2 cut(s)	847, 1540
Eam1104I	CTCTTC	2 cut(s)	718, 834
EarI	CTCTTC	2 cut(s)	718, 834
Ecl136II	GAGCTC	1 cut(s)	1421
Eco130I	CCWWGG	2 cut(s)	238, 1220
Eco24I	GRGCYC	1 cut(s)	1423
Eco53kI	GAGCTC	1 cut(s)	1421
Eco57I	CTGAAG	3 cut(s)	90, 909, 1029
EcoICRI	GAGCTC	1 cut(s)	1421
EcoRII	CCWGG	1 cut(s)	983
EcoT14I	CCWWGG	2 cut(s)	238, 1220
EcoT38I	GRGCYC	1 cut(s)	1423
ErhI	CCWWGG	2 cut(s)	238, 1220
Esp3I	CGTCTC	2 cut(s)	754, 1550
FaeI	CATG	3 cut(s)	231, 1443, 1675
FalI	AAGNNNNNCTT	2 cut(s)	758, 790
FaqI	GGGAC	2 cut(s)	394, 511
FatI	CATG	3 cut(s)	227, 1439, 1671
FauI	CCCGC	1 cut(s)	488
FauNDI	CATATG	1 cut(s)	1033
Fnu4HI	GCNGC	7 cut(s)	699, 832, 858, 873, 913, 968, 971
FokI	GGATG	1 cut(s)	87
FriOI	GRGCYC	1 cut(s)	1423
Fsp4HI	GCNGC	7 cut(s)	699, 832, 858, 873, 913, 968, 971
FspBI	CTAG	4 cut(s)	68, 158, 393, 1055
FspI	TGCGCA	1 cut(s)	584
GlaI	GCGC	2 cut(s)	584, 593
GluI	GCNGC	7 cut(s)	699, 832, 858, 873, 913, 968, 971
GsaI	CCCAGC	2 cut(s)	426, 1647
HaeIII	GGCC	1 cut(s)	1452
HapII	CCGG	1 cut(s)	116
HhaI	GCGC	2 cut(s)	585, 594
Hin1II	CATG	3 cut(s)	231, 1443, 1675
Hin6I	GCGC	2 cut(s)	583, 592
HinP1I	GCGC	2 cut(s)	583, 592
HincII	GTYRAC	2 cut(s)	604, 1074
HindII	GTYRAC	2 cut(s)	604, 1074
HindIII	AAGCTT	2 cut(s)	102, 1118
HinfI	GANTC	5 cut(s)	564, 673, 1152, 1321, 1687
HpaI	GTTAAC	1 cut(s)	604
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	2 cut(s)	200, 1512
Hpy166II	GTNNAC	5 cut(s)	155, 604, 745, 1074, 1660
Hpy188I	TCNGA	6 cut(s)	109, 361, 613, 765, 889, 1425
Hpy188III	TCNNGA	8 cut(s)	49, 85, 141, 670, 904, 1111, 1274, 1534
Hpy8I	GTNNAC	5 cut(s)	155, 604, 745, 1074, 1660
Hpy99I	CGWCG	1 cut(s)	765
HpyAV	CCTTC	2 cut(s)	860, 1335
HpyCH4III	ACNGT	3 cut(s)	817, 1345, 1561
HpyCH4IV	ACGT	1 cut(s)	747
HpyCH4V	TGCA	9 cut(s)	165, 273, 701, 860, 875, 1037, 1124, 1232, 1430
HpyF10VI	GCNNNNNNNGC	8 cut(s)	501, 589, 591, 704, 979, 1427, 1436, 1445
HpySE526I	ACGT	1 cut(s)	747
Hsp92II	CATG	3 cut(s)	231, 1443, 1675
HspAI	GCGC	2 cut(s)	583, 592
KspAI	GTTAAC	1 cut(s)	604
Kzo9I	GATC	2 cut(s)	847, 1540
LmnI	GCTCC	4 cut(s)	452, 869, 1418, 1640
Lsp1109I	GCAGC	6 cut(s)	685, 843, 844, 859, 899, 954
LweI	GCATC	2 cut(s)	570, 1611
MaeI	CTAG	4 cut(s)	68, 158, 393, 1055
MaeII	ACGT	1 cut(s)	747
MaeIII	GTNAC	3 cut(s)	427, 806, 1048
MalI	GATC	2 cut(s)	849, 1542
MboI	GATC	2 cut(s)	847, 1540
MboII	GAAGA	8 cut(s)	366, 705, 778, 851, 857, 1025, 1450, 1623
MfeI	CAATTG	2 cut(s)	293, 417
MflI	RGATCY	1 cut(s)	847
MhlI	GDGCHC	3 cut(s)	8, 1423, 1594
MlyI	GAGTC	1 cut(s)	1330
MmeI	TCCRAC	2 cut(s)	541, 743
MnlI	CCTC	5 cut(s)	300, 835, 856, 1559, 1674
MseI	TTAA	7 cut(s)	213, 258, 401, 516, 569, 603, 1714
MslI	CAYNNNNRTG	1 cut(s)	578
MspCI	CTTAAG	1 cut(s)	568
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	985
MunI	CAATTG	2 cut(s)	293, 417
Mva1269I	GAATGC	1 cut(s)	594
MvaI	CCWGG	1 cut(s)	985
MwoI	GCNNNNNNNGC	8 cut(s)	501, 589, 591, 704, 979, 1427, 1436, 1445
NdeI	CATATG	1 cut(s)	1033
NdeII	GATC	2 cut(s)	847, 1540
NlaIII	CATG	3 cut(s)	231, 1443, 1675
NlaIV	GGNNCC	3 cut(s)	7, 454, 1085
NmuCI	GTSAC	2 cut(s)	806, 1048
NsbI	TGCGCA	1 cut(s)	584
NspI	RCATGY	1 cut(s)	1443
NspV	TTCGAA	1 cut(s)	1690
PctI	GAATGC	1 cut(s)	594
PfeI	GAWTC	4 cut(s)	564, 673, 1152, 1687
PkrI	GCNGC	7 cut(s)	700, 833, 859, 874, 914, 969, 972
PleI	GAGTC	1 cut(s)	1329
PpsI	GAGTC	1 cut(s)	1329
Psp124BI	GAGCTC	1 cut(s)	1423
Psp6I	CCWGG	1 cut(s)	983
PspFI	CCCAGC	2 cut(s)	422, 1643
PspGI	CCWGG	1 cut(s)	983
PspN4I	GGNNCC	3 cut(s)	7, 454, 1085
PspPI	GGNCC	1 cut(s)	1451
PstI	CTGCAG	2 cut(s)	862, 1234
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	847
RsaI	GTAC	6 cut(s)	29, 93, 365, 897, 1307, 1661
RsaNI	GTAC	6 cut(s)	28, 92, 364, 896, 1306, 1660
RseI	CAYNNNNRTG	1 cut(s)	578
SacI	GAGCTC	1 cut(s)	1423
SaqAI	TTAA	7 cut(s)	213, 258, 401, 516, 569, 603, 1714
SatI	GCNGC	7 cut(s)	699, 832, 858, 873, 913, 968, 971
Sau3AI	GATC	2 cut(s)	847, 1540
Sau96I	GGNCC	1 cut(s)	1451
ScaI	AGTACT	1 cut(s)	365
SchI	GAGTC	1 cut(s)	1330
ScrFI	CCNGG	1 cut(s)	985
SduI	GDGCHC	3 cut(s)	8, 1423, 1594
SfaNI	GCATC	2 cut(s)	570, 1611
SfcI	CTRYAG	3 cut(s)	858, 1002, 1230
SfuI	TTCGAA	1 cut(s)	1690
SmiMI	CAYNNNNRTG	1 cut(s)	578
SmlI	CTYRAG	3 cut(s)	568, 962, 1272
SmoI	CTYRAG	3 cut(s)	568, 962, 1272
SsiI	CCGC	2 cut(s)	495, 971
SspMI	CTAG	4 cut(s)	68, 158, 393, 1055
SstI	GAGCTC	1 cut(s)	1423
StyD4I	CCNGG	1 cut(s)	983
StyI	CCWWGG	2 cut(s)	238, 1220
TaaI	ACNGT	3 cut(s)	817, 1345, 1561
TaiI	ACGT	1 cut(s)	750
TaqI	TCGA	4 cut(s)	578, 598, 794, 1690
TaqII	GACCGA	1 cut(s)	500
TatI	WGTACW	5 cut(s)	27, 91, 363, 895, 1659
TauI	GCSGC	1 cut(s)	973
TfiI	GAWTC	4 cut(s)	564, 673, 1152, 1687
Tru1I	TTAA	7 cut(s)	213, 258, 401, 516, 569, 603, 1714
Tru9I	TTAA	7 cut(s)	213, 258, 401, 516, 569, 603, 1714
TscAI	CASTG	3 cut(s)	859, 1053, 1068
TseFI	GTSAC	2 cut(s)	806, 1048
TseI	GCWGC	6 cut(s)	698, 831, 857, 872, 912, 967
Tsp45I	GTSAC	2 cut(s)	806, 1048
TspDTI	ATGAA	2 cut(s)	946, 1287
TspRI	CASTG	3 cut(s)	859, 1053, 1068
Vha464I	CTTAAG	1 cut(s)	568
XapI	RAATTY	2 cut(s)	1511, 1709
XceI	RCATGY	1 cut(s)	1443
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1390
XspI	CTAG	4 cut(s)	68, 158, 393, 1055
ZrmI	AGTACT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.