Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0009055

Physical Location & Seq

Genomic Coordinates Forward (+)

44175441 .. 44177994

Gene Structure 2554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG362400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGGTAGTGGTGGGACGAACATTGATGTTGGTCTCAACACAGTTCTGGGAGGTGCCTCCTTTATATCCTGTGTTGTGGTTGGAATCATAAGCATTTCAATTCGCAAAAGGCTTGTTCGAGTTGACAAATCTGACTTCGTGCGAGACACCTCCTTCTACCTTTTGGTTATCGTGTGCTTGATTCTGATCTTGATTCAGAAAGAAATAGATGTGTGGGCTGCCGTGGCTTTCTCTTCACTTTATGTTGTTTATGTGATTGGGGTTTATGTATCACATACGCATAGGCGGAATTCTGGTAAAACAAGTGAATCACACAGGAGTTTGAGCAACGGTAGTCATGACTTGACAGTACCAATCATGAGTAGCATGGAGAGGGATGGAAATGAAGAGCTTAGTGCTGCAGAGGAAGGAGCTTTAGAACACATTTCTGCCGTAGAAGAAGTCAAGAAAGGCTGCTTTCAACTCCCCCGACCATCAGATTCTTGTCAAATGTTGATCTTCATACTTGAGTTGCCTCTTTATATTCCTAGGAGATTGACAATTCCTGTCGTTTGTGAGGAGAGATGGTCTAAACCATATGCAGTTGCTTCTGTGACACTAGCACCAGTGCTGTTGTCATCCCTTTGGAACCATCAGTATGCAAACGCTACCTTCGAGACTAGCCTTTGGATCTATTTGATTGGATCGATTATTGGACTAGTTTTCGGGTTTGTTGCATGTTTGACAACAGAGAAGTCAAGCCCACCAAAGAAATGCTTATTTCCTTGGCTTGCTGCTGGCTTCTTGATGAGTGTTGCTTGGAGTTACATTACAGCTCAGGAACTTGTGGCCTTGTTAGTCTCAATAGGGTACATATTAGGTGTTAGTCCTTCAATATTAGGACTAACAGTCCTTGCTTGGGGTAATTCACTTGGGGATTTGATAACCAATTTGACCATGGCTTTGAATGGAGGACCAGATGGAGCACAGATTGCCTTTTCTGCCTGTTATGCTGGTCCTATCTTCAACACTCTCTTTGGATTGGGGCTATCATTTGTTGGCTCTTCCTGGTCAAAATACCCTTCAGCTGTTGTTATTCATGGAGATCCGTACCTGTTGGAGACGTTGGGTTTGTTGGCAGGAGGCTTGCTATGGGCACTTGTGGTGTTGCCAAGGAGAGATATGACCCTTGATGGGGTCTTGGGGTGCGGTCTTTTAGTTATATACACCATTTCTATGTCTTTGAGGTTAATTCAAACACTTGGGTCTCTCCAGCTACAAACAGTCATAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

424

Amino Acids

45.77

Weight (kDa)

5.99

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_Ca_ex	PF01699	7 - 89	4.5e-09	Sodium/calcium exchanger protein
Na_Ca_ex	PF01699	257 - 408	3.7e-25	Sodium/calcium exchanger protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17850 AT5G17850
fragaria_vesca	FvH4_2g05650 FvH4_6g03400
malus_domestica	MD12G1011800.v1.1 MD14G1008300.v1.1 MD14G1008700.v1.1
prunus_persica	Prupe.7G015000_v2.0.a1 Prupe.7G015000_v2.0.a1
pyrus_communis	pycom12g00910 pycom14g00650 pycom14g00710
rosa_chinensis	RchiOBHm_Chr3g0496041
rosa_laevigata	RLG00000022568
rosa_multiflora	Rmu_sc0005781.1_g000025
rosa_roxburghii	Rroxscaffold_6G00389620
rosa_rugosa	Rorug03G0279200
rosa_samantha	Rh3AG326000 Rh3BG362400 Rh3CG358400 Rh3DG361800
rosa_wichuraiana	Rw3G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	53
AciI	CCGC	2 cut(s)	286, 1188
AclWI	GGATC	3 cut(s)	677, 691, 1079
AcsI	RAATTY	1 cut(s)	289
AcuI	CTGAAG	1 cut(s)	1047
AfaI	GTAC	3 cut(s)	351, 851, 1091
AfiI	CCNNNNNNNGG	3 cut(s)	898, 1173, 1174
AgsI	TTSAA	6 cut(s)	99, 461, 873, 946, 1006, 1235
AhdI	GACNNNNNGTC	1 cut(s)	887
AhlI	ACTAGT	1 cut(s)	697
AjnI	CCWGG	1 cut(s)	1046
AluBI	AGCT	5 cut(s)	391, 413, 815, 1067, 1255
AluI	AGCT	5 cut(s)	391, 413, 815, 1067, 1255
Alw21I	GWGCWC	1 cut(s)	967
Alw26I	GTCTC	6 cut(s)	38, 138, 650, 844, 1094, 1251
AlwI	GGATC	3 cut(s)	677, 691, 1079
AoxI	GGCC	1 cut(s)	828
ApeKI	GCWGC	4 cut(s)	218, 398, 453, 773
ApoI	RAATTY	1 cut(s)	289
ArsI	GACNNNNNNTTYG	4 cut(s)	925, 957, 1093, 1125
AspA2I	CCTAGG	1 cut(s)	527
AspS9I	GGNCC	2 cut(s)	953, 995
AvaII	GGWCC	2 cut(s)	953, 995
AvrII	CCTAGG	1 cut(s)	527
BaeGI	GKGCMC	1 cut(s)	1138
BanI	GGYRCC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	967
BbvI	GCAGC	4 cut(s)	205, 385, 440, 760
BccI	CCATC	6 cut(s)	371, 481, 558, 639, 953, 1166
BceAI	ACGGC	2 cut(s)	206, 416
BciT130I	CCWGG	1 cut(s)	1048
BcoDI	GTCTC	6 cut(s)	38, 138, 650, 844, 1094, 1251
BcuI	ACTAGT	1 cut(s)	697
BfaI	CTAG	4 cut(s)	528, 599, 660, 698
BfmI	CTRYAG	1 cut(s)	399
BisI	GCNGC	4 cut(s)	219, 399, 454, 774
BlnI	CCTAGG	1 cut(s)	527
BlsI	GCNGC	4 cut(s)	220, 400, 455, 775
Bme1390I	CCNGG	1 cut(s)	1048
Bme18I	GGWCC	2 cut(s)	953, 995
BmeRI	GACNNNNNGTC	1 cut(s)	887
BmgT120I	GGNCC	2 cut(s)	953, 995
BmiI	GGNNCC	2 cut(s)	55, 629
BmrFI	CCNGG	1 cut(s)	1048
BpmI	CTGGAG	1 cut(s)	1235
Bpu10I	CCTNAGC	1 cut(s)	816
BpuEI	CTTGAG	1 cut(s)	527
Bsa29I	ATCGAT	1 cut(s)	686
BsaBI	GATNNNNATC	1 cut(s)	185
BsaI	GGTCTC	2 cut(s)	38, 1251
BsaJI	CCNNGG	5 cut(s)	222, 527, 764, 936, 1151
BsaXI	ACNNNNNCTCC	2 cut(s)	551, 581
Bsc4I	CCNNNNNNNGG	3 cut(s)	898, 1173, 1174
Bse1I	ACTGG	1 cut(s)	605
Bse8I	GATNNNNATC	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	1048
BseCI	ATCGAT	1 cut(s)	686
BseDI	CCNNGG	5 cut(s)	222, 527, 764, 936, 1151
BseGI	GGATG	2 cut(s)	382, 617
BseJI	GATNNNNATC	1 cut(s)	185
BseLI	CCNNNNNNNGG	3 cut(s)	898, 1173, 1174
BseMII	CTCAG	1 cut(s)	830
BseNI	ACTGG	1 cut(s)	605
BseRI	GAGGAG	1 cut(s)	572
BseSI	GKGCMC	1 cut(s)	1138
BseXI	GCAGC	4 cut(s)	205, 385, 440, 760
BshFI	GGCC	1 cut(s)	830
BshNI	GGYRCC	1 cut(s)	53
BshVI	ATCGAT	1 cut(s)	686
BsiHKAI	GWGCWC	1 cut(s)	967
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	3 cut(s)	898, 1173, 1174
BsmAI	GTCTC	6 cut(s)	38, 138, 650, 844, 1094, 1251
BsmBI	CGTCTC	1 cut(s)	1094
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	830
Bso31I	GGTCTC	2 cut(s)	38, 1251
Bsp1286I	GDGCHC	2 cut(s)	967, 1138
Bsp143I	GATC	5 cut(s)	186, 495, 669, 683, 1084
Bsp19I	CCATGG	1 cut(s)	936
BspACI	CCGC	2 cut(s)	286, 1188
BspANI	GGCC	1 cut(s)	830
BspCNI	CTCAG	1 cut(s)	829
BspDI	ATCGAT	1 cut(s)	686
BspHI	TCATGA	2 cut(s)	337, 357
BspLI	GGNNCC	2 cut(s)	55, 629
BspMAI	CTGCAG	1 cut(s)	403
BspPI	GGATC	3 cut(s)	677, 691, 1079
BspQI	GCTCTTC	2 cut(s)	381, 1048
BspT107I	GGYRCC	1 cut(s)	53
BspTNI	GGTCTC	2 cut(s)	38, 1251
BsrI	ACTGG	1 cut(s)	605
BssECI	CCNNGG	5 cut(s)	222, 527, 764, 936, 1151
BssMI	GATC	5 cut(s)	186, 495, 669, 683, 1084
BssT1I	CCWWGG	4 cut(s)	527, 764, 936, 1151
Bst2UI	CCWGG	1 cut(s)	1048
Bst4CI	ACNGT	5 cut(s)	43, 332, 349, 889, 1264
Bst6I	CTCTTC	3 cut(s)	238, 381, 1048
BstAPI	GCANNNNNTGC	1 cut(s)	971
BstC8I	GCNNGC	3 cut(s)	771, 778, 1127
BstDEI	CTNAG	2 cut(s)	392, 816
BstDSI	CCRYGG	2 cut(s)	222, 936
BstF5I	GGATG	2 cut(s)	382, 617
BstKTI	GATC	5 cut(s)	189, 498, 672, 686, 1087
BstMAI	GTCTC	6 cut(s)	38, 138, 650, 844, 1094, 1251
BstMBI	GATC	5 cut(s)	186, 495, 669, 683, 1084
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 971, 980, 989
BstNI	CCWGG	1 cut(s)	1048
BstNSI	RCATGY	1 cut(s)	720
BstSCI	CCNGG	1 cut(s)	1046
BstSFI	CTRYAG	1 cut(s)	399
BstSLI	GKGCMC	1 cut(s)	1138
BstV1I	GCAGC	4 cut(s)	205, 385, 440, 760
BstX2I	RGATCY	2 cut(s)	669, 1084
BstYI	RGATCY	2 cut(s)	669, 1084
Bsu15I	ATCGAT	1 cut(s)	686
BsuRI	GGCC	1 cut(s)	830
BsuTUI	ATCGAT	1 cut(s)	686
BtgI	CCRYGG	2 cut(s)	222, 936
BtsCI	GGATG	2 cut(s)	382, 617
BtsIMutI	CAGTG	1 cut(s)	612
Cac8I	GCNNGC	3 cut(s)	771, 778, 1127
CciI	TCATGA	2 cut(s)	337, 357
Cfr13I	GGNCC	2 cut(s)	953, 995
ClaI	ATCGAT	1 cut(s)	686
Csp6I	GTAC	3 cut(s)	350, 850, 1090
CviAII	CATG	7 cut(s)	338, 358, 367, 717, 937, 1079, 1272
CviQI	GTAC	3 cut(s)	350, 850, 1090
DdeI	CTNAG	2 cut(s)	392, 816
DpnI	GATC	5 cut(s)	188, 497, 671, 685, 1086
DpnII	GATC	5 cut(s)	186, 495, 669, 683, 1084
DriI	GACNNNNNGTC	1 cut(s)	887
Eam1104I	CTCTTC	3 cut(s)	238, 381, 1048
Eam1105I	GACNNNNNGTC	1 cut(s)	887
EarI	CTCTTC	3 cut(s)	238, 381, 1048
EciI	GGCGGA	1 cut(s)	301
Eco130I	CCWWGG	4 cut(s)	527, 764, 936, 1151
Eco31I	GGTCTC	2 cut(s)	38, 1251
Eco47I	GGWCC	2 cut(s)	953, 995
Eco57I	CTGAAG	1 cut(s)	1047
EcoRI	GAATTC	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	1046
EcoT14I	CCWWGG	4 cut(s)	527, 764, 936, 1151
ErhI	CCWWGG	4 cut(s)	527, 764, 936, 1151
Esp3I	CGTCTC	1 cut(s)	1094
FaeI	CATG	7 cut(s)	341, 361, 370, 720, 940, 1082, 1275
FalI	AAGNNNNNCTT	2 cut(s)	740, 772
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	7 cut(s)	337, 357, 366, 716, 936, 1078, 1271
FauNDI	CATATG	1 cut(s)	577
Fnu4HI	GCNGC	4 cut(s)	219, 399, 454, 774
FokI	GGATG	2 cut(s)	389, 604
Fsp4HI	GCNGC	4 cut(s)	219, 399, 454, 774
FspBI	CTAG	4 cut(s)	528, 599, 660, 698
GluI	GCNGC	4 cut(s)	219, 399, 454, 774
GsuI	CTGGAG	1 cut(s)	1235
HaeIII	GGCC	1 cut(s)	830
Hin1II	CATG	7 cut(s)	341, 361, 370, 720, 940, 1082, 1275
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	5 cut(s)	84, 181, 193, 308, 479
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	4 cut(s)	133, 186, 198, 478
Hpy188III	TCNNGA	7 cut(s)	190, 338, 358, 445, 655, 784, 818
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	5 cut(s)	163, 401, 661, 879, 1071
HpyCH4III	ACNGT	5 cut(s)	43, 332, 349, 889, 1264
HpyCH4IV	ACGT	1 cut(s)	1103
HpyCH4V	TGCA	4 cut(s)	401, 581, 641, 716
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 971, 980, 989
HpyF3I	CTNAG	2 cut(s)	392, 816
HpySE526I	ACGT	1 cut(s)	1103
Hsp92II	CATG	7 cut(s)	341, 361, 370, 720, 940, 1082, 1275
Kzo9I	GATC	5 cut(s)	186, 495, 669, 683, 1084
LguI	GCTCTTC	2 cut(s)	381, 1048
LmnI	GCTCC	2 cut(s)	410, 962
Lsp1109I	GCAGC	4 cut(s)	205, 385, 440, 760
MaeI	CTAG	4 cut(s)	528, 599, 660, 698
MaeII	ACGT	1 cut(s)	1103
MaeIII	GTNAC	2 cut(s)	592, 803
MalI	GATC	5 cut(s)	188, 497, 671, 685, 1086
MboI	GATC	5 cut(s)	186, 495, 669, 683, 1084
MboII	GAAGA	6 cut(s)	225, 398, 449, 490, 994, 1035
MflI	RGATCY	2 cut(s)	669, 1084
MhlI	GDGCHC	2 cut(s)	967, 1138
MluCI	AATT	6 cut(s)	99, 289, 540, 904, 928, 1230
MmeI	TCCRAC	2 cut(s)	61, 1077
MseI	TTAA	1 cut(s)	1229
MslI	CAYNNNNRTG	2 cut(s)	636, 1214
MspA1I	CMGCKG	1 cut(s)	1067
MspR9I	CCNGG	1 cut(s)	1048
MvaI	CCWGG	1 cut(s)	1048
MwoI	GCNNNNNNNGC	4 cut(s)	224, 971, 980, 989
NcoI	CCATGG	1 cut(s)	936
NdeI	CATATG	1 cut(s)	577
NdeII	GATC	5 cut(s)	186, 495, 669, 683, 1084
NlaIII	CATG	7 cut(s)	341, 361, 370, 720, 940, 1082, 1275
NlaIV	GGNNCC	2 cut(s)	55, 629
NmuCI	GTSAC	1 cut(s)	592
NspI	RCATGY	1 cut(s)	720
PagI	TCATGA	2 cut(s)	337, 357
PciSI	GCTCTTC	2 cut(s)	381, 1048
PcsI	WCGNNNNNNNCGW	1 cut(s)	651
PfeI	GAWTC	5 cut(s)	84, 181, 193, 308, 479
PkrI	GCNGC	4 cut(s)	220, 400, 455, 775
Psp6I	CCWGG	1 cut(s)	1046
PspGI	CCWGG	1 cut(s)	1046
PspN4I	GGNNCC	2 cut(s)	55, 629
PspPI	GGNCC	2 cut(s)	953, 995
PstI	CTGCAG	1 cut(s)	403
PsuI	RGATCY	2 cut(s)	669, 1084
PvuII	CAGCTG	1 cut(s)	1067
RsaI	GTAC	3 cut(s)	351, 851, 1091
RsaNI	GTAC	3 cut(s)	350, 850, 1090
RseI	CAYNNNNRTG	2 cut(s)	636, 1214
SapI	GCTCTTC	2 cut(s)	381, 1048
SaqAI	TTAA	1 cut(s)	1229
SatI	GCNGC	4 cut(s)	219, 399, 454, 774
Sau3AI	GATC	5 cut(s)	186, 495, 669, 683, 1084
Sau96I	GGNCC	2 cut(s)	953, 995
ScrFI	CCNGG	1 cut(s)	1048
SduI	GDGCHC	2 cut(s)	967, 1138
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	2 cut(s)	953, 995
SmiMI	CAYNNNNRTG	2 cut(s)	636, 1214
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
SpeI	ACTAGT	1 cut(s)	697
Sse9I	AATT	6 cut(s)	99, 289, 540, 904, 928, 1230
SsiI	CCGC	2 cut(s)	286, 1188
SspI	AATATT	1 cut(s)	876
SspMI	CTAG	4 cut(s)	528, 599, 660, 698
StyD4I	CCNGG	1 cut(s)	1046
StyI	CCWWGG	4 cut(s)	527, 764, 936, 1151
TaaI	ACNGT	5 cut(s)	43, 332, 349, 889, 1264
TaiI	ACGT	1 cut(s)	1106
TaqI	TCGA	3 cut(s)	118, 654, 686
TasI	AATT	6 cut(s)	99, 289, 540, 904, 928, 1230
TfiI	GAWTC	5 cut(s)	84, 181, 193, 308, 479
Tru1I	TTAA	1 cut(s)	1229
Tru9I	TTAA	1 cut(s)	1229
TscAI	CASTG	1 cut(s)	612
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	4 cut(s)	218, 398, 453, 773
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	3 cut(s)	399, 490, 1067
TspGWI	ACGGA	1 cut(s)	1077
TspRI	CASTG	1 cut(s)	612
VpaK11BI	GGWCC	2 cut(s)	953, 995
XapI	RAATTY	1 cut(s)	289
XceI	RCATGY	1 cut(s)	720
XcmI	CCANNNNNNNNNTGG	1 cut(s)	934
XmaJI	CCTAGG	1 cut(s)	527
XspI	CTAG	4 cut(s)	528, 599, 660, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.