MD14G1008300.v1.1

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0009055
Physical Location & Seq
Reverse (-)
845327 .. 846802
1476 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1008300.v1.1.491

Sequence Viewer

Length: 441 bp
ATGGGTGGCGGGACGGGCGAAATTGGTCTTAATACAGTTTTGGGCGGTGCTTCCTTTGTGTCGTGTGCTGTGGTTGGAATCTTAAGCATTTCAATGCGCAAAAGGCGCATTCGAGTTCACAAAGCGGACTTTGTGAGAGATATTTGCTTCTACCTTTTGGTCATTGTATGTTTGGGTGTTATCTTGATTCACAAGGAAATAGATGTGTGGGCTGCAATGGCTTTCTCTTCGCTCTATATTGCTTATGTGATTGTGGTTTACGTCTCACACAAGCATCGGAAGAAAAGTGTAGAATTGAGCTGTAATTCGAGCAATGAGAGTGACTTGACTGTGCCAATTCTTAGCAGCATTGAAGAGGAAGATCTCAGTGCTGCAGAGAAAGGAGCTGCACAAGGAAGTTCTGAAGTAGTAGAAGAGATTGACTATTCCTGTTGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_Ca_ex

Protein Analysis

147

Amino Acids

15.8

Weight (kDa)

5.52

Isoelectric Point (pI)

55.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 4 - 87 8.7e-09 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 98
AciI CCGC 3 cut(s) 9, 45, 125
AcuI CTGAAG 1 cut(s) 423
AflII CTTAAG 1 cut(s) 82
AgsI TTSAA 2 cut(s) 93, 353
AluBI AGCT 2 cut(s) 300, 386
AluI AGCT 2 cut(s) 300, 386
Alw26I GTCTC 1 cut(s) 268
ApeKI GCWGC 4 cut(s) 212, 345, 371, 386
AspLEI GCGC 2 cut(s) 99, 108
BbvI GCAGC 4 cut(s) 199, 357, 358, 373
BcoDI GTCTC 1 cut(s) 268
BfmI CTRYAG 1 cut(s) 372
BfrI CTTAAG 1 cut(s) 82
BglII AGATCT 1 cut(s) 361
BisI GCNGC 4 cut(s) 213, 346, 372, 387
BlsI GCNGC 4 cut(s) 214, 347, 373, 388
BmsI GCATC 1 cut(s) 283
Bse3DI GCAATG 2 cut(s) 222, 319
BseMI GCAATG 2 cut(s) 222, 319
BseMII CTCAG 1 cut(s) 379
BseXI GCAGC 4 cut(s) 199, 357, 358, 373
BsgI GTGCAG 1 cut(s) 372
BslFI GGGAC 1 cut(s) 25
BsmAI GTCTC 1 cut(s) 268
BsmBI CGTCTC 1 cut(s) 268
BsmFI GGGAC 1 cut(s) 25
BsmI GAATGC 1 cut(s) 108
Bsp143I GATC 1 cut(s) 361
BspACI CCGC 3 cut(s) 9, 45, 125
BspCNI CTCAG 1 cut(s) 378
BspMAI CTGCAG 1 cut(s) 376
BspTI CTTAAG 1 cut(s) 82
BsrDI GCAATG 2 cut(s) 222, 319
BssMI GATC 1 cut(s) 361
Bst4CI ACNGT 2 cut(s) 37, 331
Bst6I CTCTTC 3 cut(s) 232, 348, 408
BstAFI CTTAAG 1 cut(s) 82
BstDEI CTNAG 2 cut(s) 341, 365
BstHHI GCGC 2 cut(s) 99, 108
BstKTI GATC 1 cut(s) 364
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 1 cut(s) 361
BstMWI GCNNNNNNNGC 4 cut(s) 15, 103, 105, 218
BstSFI CTRYAG 1 cut(s) 372
BstV1I GCAGC 4 cut(s) 199, 357, 358, 373
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BtsIMutI CAGTG 1 cut(s) 373
CfoI GCGC 2 cut(s) 99, 108
CviJI RGCY 4 cut(s) 212, 221, 300, 386
CviKI_1 RGCY 4 cut(s) 212, 221, 300, 386
DdeI CTNAG 2 cut(s) 341, 365
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
Eam1104I CTCTTC 3 cut(s) 232, 348, 408
EarI CTCTTC 3 cut(s) 232, 348, 408
Eco57I CTGAAG 1 cut(s) 423
Esp3I CGTCTC 1 cut(s) 268
FaiI YATR 3 cut(s) 169, 237, 246
FaqI GGGAC 1 cut(s) 25
FauI CCCGC 1 cut(s) 2
Fnu4HI GCNGC 4 cut(s) 213, 346, 372, 387
Fsp4HI GCNGC 4 cut(s) 213, 346, 372, 387
FspI TGCGCA 1 cut(s) 98
GlaI GCGC 2 cut(s) 98, 107
GluI GCNGC 4 cut(s) 213, 346, 372, 387
HhaI GCGC 2 cut(s) 99, 108
Hin6I GCGC 2 cut(s) 97, 106
HinP1I GCGC 2 cut(s) 97, 106
HinfI GANTC 2 cut(s) 78, 187
Hpy166II GTNNAC 2 cut(s) 118, 259
Hpy188I TCNGA 2 cut(s) 279, 403
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 2 cut(s) 118, 259
HpyCH4III ACNGT 2 cut(s) 37, 331
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 3 cut(s) 215, 374, 389
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 103, 105, 218
HpyF3I CTNAG 2 cut(s) 341, 365
HpySE526I ACGT 1 cut(s) 261
HspAI GCGC 2 cut(s) 97, 106
Kzo9I GATC 1 cut(s) 361
LmnI GCTCC 1 cut(s) 383
Lsp1109I GCAGC 4 cut(s) 199, 357, 358, 373
LweI GCATC 1 cut(s) 283
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 320
MalI GATC 1 cut(s) 363
MboI GATC 1 cut(s) 361
MboII GAAGA 5 cut(s) 219, 292, 365, 371, 425
MflI RGATCY 1 cut(s) 361
MluCI AATT 4 cut(s) 21, 293, 304, 336
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 1 cut(s) 349
MseI TTAA 2 cut(s) 30, 83
MslI CAYNNNNRTG 1 cut(s) 92
MspCI CTTAAG 1 cut(s) 82
Mva1269I GAATGC 1 cut(s) 108
MwoI GCNNNNNNNGC 4 cut(s) 15, 103, 105, 218
NdeII GATC 1 cut(s) 361
NmuCI GTSAC 1 cut(s) 320
NsbI TGCGCA 1 cut(s) 98
PctI GAATGC 1 cut(s) 108
PfeI GAWTC 2 cut(s) 78, 187
PkrI GCNGC 4 cut(s) 214, 347, 373, 388
PstI CTGCAG 1 cut(s) 376
PsuI RGATCY 1 cut(s) 361
RseI CAYNNNNRTG 1 cut(s) 92
SaqAI TTAA 2 cut(s) 30, 83
SatI GCNGC 4 cut(s) 213, 346, 372, 387
Sau3AI GATC 1 cut(s) 361
SetI ASST 4 cut(s) 156, 264, 302, 388
SfaNI GCATC 1 cut(s) 283
SfcI CTRYAG 1 cut(s) 372
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
Sse9I AATT 4 cut(s) 21, 293, 304, 336
SsiI CCGC 3 cut(s) 9, 45, 125
TaaI ACNGT 2 cut(s) 37, 331
TaiI ACGT 1 cut(s) 264
TaqI TCGA 2 cut(s) 112, 308
TasI AATT 4 cut(s) 21, 293, 304, 336
TfiI GAWTC 2 cut(s) 78, 187
Tru1I TTAA 2 cut(s) 30, 83
Tru9I TTAA 2 cut(s) 30, 83
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 4 cut(s) 212, 345, 371, 386
Tsp45I GTSAC 1 cut(s) 320
TspRI CASTG 1 cut(s) 373
Vha464I CTTAAG 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.