pycom12g00910

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0009055
Physical Location & Seq
Reverse (-)
800414 .. 801325
912 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g00910.1

Sequence Viewer

Length: 912 bp
ATGGGCACCTTAGTTTTCTTACCAAAGTACAAAAATTACATAATTTTCTTGAACATCTCGTTTCTGCTAGTGGGATGTGCTTTCTTGATTGTACATTTTGAAGCTTCAGATTTTCCAGTTCTAAGCACTTCTGAGATAAGCACTTCTGGGATTTCCAGATTTTCTGGTTCACTAGATTGCAAGGGTTTTCTTAGTTTAGATGACTACAAAGCAAAGTGCTTTCACCTTAAATCCAAAAACCCATGTGTCTCCCAAGGCTATATAAACTATCTTAACATTTTCTACTGCAAGTTTGGAACTTTTCCTCAATTGGGTTATTGCTGTATGTTTCTTTGGCTTCTGGTTTTGTTCTATTTGATGGGAAACACAGCTTCTGAGTACTTTTGTTCTTCACTTGATAGTTTATCTAGGCTGTTAAAATTGTCCCCAACAATTGCTGGGGTAACTCTGCTTTCTCTTGGCAATGGCGCCAATGATGTGTTTTCCAGTCTTGTTTCGTTTATGGATGGCGGGAATGGCGAAATCGGTCTTAATACAATTTTGGGTGGTGCTTCTTTTGTGTCGTGTGTTGTGGTTGGAATCTTAAGCATTTCGATGCGCAAAAGGCGCATTCGAGTTAACAAATCGGACTTTGTGAGAGATATTTGCTTCTACCTTTTGGTCATTGTATGTTTGGGTGTTATCTTGATTCGCAAGGAAATAGATGTGTGGGCTGCAATGGCTTTCTCTTCACTCTATATTGTCTATGTGATTGTGGTTTACGTTTCACACACACGTCGGAAGAAATGCTTTGAATTGAGCTGTAATTCGAGCAATGAGAGTGACTTGACTGTGCCAATTCTTAGCAGCATTGAAGAGGAAGATCGATCAGTGCTGCAGAGGAAGGAGCTGCACAAGGCAGTTCTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_Ca_ex

Protein Analysis

304

Amino Acids

33.81

Weight (kDa)

8.62

Isoelectric Point (pI)

41.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 111 - 254 1.8e-25 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 599
AccB1I GGYRCC 2 cut(s) 5, 467
AciI CCGC 1 cut(s) 510
AcuI CTGAAG 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 468
AfaI GTAC 3 cut(s) 29, 93, 380
AfiI CCNNNNNNNGG 1 cut(s) 311
AflII CTTAAG 1 cut(s) 583
AflIII ACRYGT 1 cut(s) 773
AgsI TTSAA 4 cut(s) 52, 101, 794, 854
AjiI CACGTC 1 cut(s) 776
AluBI AGCT 4 cut(s) 104, 371, 801, 889
AluI AGCT 4 cut(s) 104, 371, 801, 889
Alw26I GTCTC 1 cut(s) 253
AlwNI CAGNNNCTG 1 cut(s) 374
ApeKI GCWGC 4 cut(s) 713, 846, 874, 889
AspLEI GCGC 3 cut(s) 470, 600, 609
AsuHPI GGTGA 1 cut(s) 215
BaeGI GKGCMC 1 cut(s) 8
BanI GGYRCC 2 cut(s) 5, 467
BbvI GCAGC 4 cut(s) 700, 858, 861, 876
BccI CCATC 2 cut(s) 352, 500
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 3 cut(s) 68, 173, 408
BfmI CTRYAG 1 cut(s) 875
BfoI RGCGCY 1 cut(s) 471
BfrI CTTAAG 1 cut(s) 583
BisI GCNGC 4 cut(s) 714, 847, 875, 890
BlsI GCNGC 4 cut(s) 715, 848, 876, 891
BmcAI AGTACT 1 cut(s) 380
BmgBI CACGTC 1 cut(s) 776
BmiI GGNNCC 2 cut(s) 7, 469
BmsI GCATC 1 cut(s) 585
Bsa29I ATCGAT 1 cut(s) 865
BsaHI GRCGYC 1 cut(s) 468
BsaJI CCNNGG 1 cut(s) 253
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse1I ACTGG 2 cut(s) 116, 486
Bse3DI GCAATG 3 cut(s) 469, 723, 820
BseCI ATCGAT 1 cut(s) 865
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 2 cut(s) 80, 511
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMI GCAATG 3 cut(s) 469, 723, 820
BseMII CTCAG 2 cut(s) 123, 366
BseNI ACTGG 2 cut(s) 116, 486
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 4 cut(s) 700, 858, 861, 876
BseYI CCCAGC 1 cut(s) 437
BsgI GTGCAG 1 cut(s) 875
BshNI GGYRCC 2 cut(s) 5, 467
BshVI ATCGAT 1 cut(s) 865
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 1 cut(s) 311
BsmAI GTCTC 1 cut(s) 253
BsmFI GGGAC 1 cut(s) 409
BsmI GAATGC 1 cut(s) 609
Bsp1286I GDGCHC 1 cut(s) 8
Bsp1407I TGTACA 1 cut(s) 91
Bsp143I GATC 2 cut(s) 862, 866
BspACI CCGC 1 cut(s) 510
BspCNI CTCAG 2 cut(s) 124, 367
BspDI ATCGAT 1 cut(s) 865
BspLI GGNNCC 2 cut(s) 7, 469
BspMAI CTGCAG 1 cut(s) 879
BspT107I GGYRCC 2 cut(s) 5, 467
BspTI CTTAAG 1 cut(s) 583
BsrDI GCAATG 3 cut(s) 469, 723, 820
BsrGI TGTACA 1 cut(s) 91
BsrI ACTGG 2 cut(s) 116, 486
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 2 cut(s) 862, 866
BssNI GRCGYC 1 cut(s) 468
BssT1I CCWWGG 1 cut(s) 253
Bst4CI ACNGT 1 cut(s) 832
Bst6I CTCTTC 2 cut(s) 733, 849
BstACI GRCGYC 1 cut(s) 468
BstAFI CTTAAG 1 cut(s) 583
BstAUI TGTACA 1 cut(s) 91
BstDEI CTNAG 6 cut(s) 10, 122, 132, 191, 375, 842
BstF5I GGATG 2 cut(s) 80, 511
BstH2I RGCGCY 1 cut(s) 471
BstHHI GCGC 3 cut(s) 470, 600, 609
BstKTI GATC 2 cut(s) 865, 869
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 2 cut(s) 862, 866
BstMWI GCNNNNNNNGC 4 cut(s) 516, 604, 606, 719
BstSFI CTRYAG 1 cut(s) 875
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 4 cut(s) 700, 858, 861, 876
Bsu15I ATCGAT 1 cut(s) 865
BsuTUI ATCGAT 1 cut(s) 865
BtrI CACGTC 1 cut(s) 776
BtsCI GGATG 2 cut(s) 80, 511
BtsIMutI CAGTG 1 cut(s) 876
CaiI CAGNNNCTG 1 cut(s) 374
CfoI GCGC 3 cut(s) 470, 600, 609
ClaI ATCGAT 1 cut(s) 865
Csp6I GTAC 3 cut(s) 28, 92, 379
CviAII CATG 1 cut(s) 243
CviJI RGCY 9 cut(s) 104, 258, 337, 371, 412, 713, 722, 801, 889
CviKI_1 RGCY 9 cut(s) 104, 258, 337, 371, 412, 713, 722, 801, 889
CviQI GTAC 3 cut(s) 28, 92, 379
DdeI CTNAG 6 cut(s) 10, 122, 132, 191, 375, 842
DinI GGCGCC 1 cut(s) 469
DpnI GATC 2 cut(s) 864, 868
DpnII GATC 2 cut(s) 862, 866
Eam1104I CTCTTC 2 cut(s) 733, 849
EarI CTCTTC 2 cut(s) 733, 849
Eco130I CCWWGG 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 253
EgeI GGCGCC 1 cut(s) 469
EheI GGCGCC 1 cut(s) 469
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 1 cut(s) 246
FaiI YATR 9 cut(s) 41, 244, 261, 263, 326, 503, 670, 738, 747
FalI AAGNNNNNCTT 2 cut(s) 773, 805
FaqI GGGAC 1 cut(s) 409
FatI CATG 1 cut(s) 242
FauI CCCGC 1 cut(s) 503
Fnu4HI GCNGC 4 cut(s) 714, 847, 875, 890
FokI GGATG 2 cut(s) 87, 518
Fsp4HI GCNGC 4 cut(s) 714, 847, 875, 890
FspBI CTAG 3 cut(s) 68, 173, 408
FspI TGCGCA 1 cut(s) 599
GlaI GCGC 3 cut(s) 469, 599, 608
GluI GCNGC 4 cut(s) 714, 847, 875, 890
GsaI CCCAGC 1 cut(s) 441
HaeII RGCGCY 1 cut(s) 471
HhaI GCGC 3 cut(s) 470, 600, 609
Hin1I GRCGYC 1 cut(s) 468
Hin1II CATG 1 cut(s) 246
Hin6I GCGC 3 cut(s) 468, 598, 607
HinP1I GCGC 3 cut(s) 468, 598, 607
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HindIII AAGCTT 1 cut(s) 102
HinfI GANTC 2 cut(s) 579, 688
HpaI GTTAAC 1 cut(s) 619
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 3 cut(s) 170, 619, 760
Hpy188I TCNGA 6 cut(s) 109, 133, 376, 628, 780, 906
Hpy188III TCNNGA 4 cut(s) 49, 85, 156, 685
Hpy8I GTNNAC 3 cut(s) 170, 619, 760
Hpy99I CGWCG 1 cut(s) 780
HpyAV CCTTC 1 cut(s) 877
HpyCH4III ACNGT 1 cut(s) 832
HpyCH4IV ACGT 2 cut(s) 762, 775
HpyCH4V TGCA 5 cut(s) 180, 288, 716, 877, 892
HpyF10VI GCNNNNNNNGC 4 cut(s) 516, 604, 606, 719
HpyF3I CTNAG 6 cut(s) 10, 122, 132, 191, 375, 842
HpySE526I ACGT 2 cut(s) 762, 775
Hsp92I GRCGYC 1 cut(s) 468
Hsp92II CATG 1 cut(s) 246
HspAI GCGC 3 cut(s) 468, 598, 607
KasI GGCGCC 1 cut(s) 467
KspAI GTTAAC 1 cut(s) 619
Kzo9I GATC 2 cut(s) 862, 866
LmnI GCTCC 1 cut(s) 886
LpnPI CCDG 7 cut(s) 129, 132, 150, 169, 326, 423, 499
Lsp1109I GCAGC 4 cut(s) 700, 858, 861, 876
LweI GCATC 1 cut(s) 585
MaeI CTAG 3 cut(s) 68, 173, 408
MaeII ACGT 2 cut(s) 762, 775
MaeIII GTNAC 2 cut(s) 442, 821
MalI GATC 2 cut(s) 864, 868
MboI GATC 2 cut(s) 862, 866
MboII GAAGA 5 cut(s) 381, 720, 793, 866, 872
MfeI CAATTG 2 cut(s) 308, 432
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 9 cut(s) 34, 42, 308, 419, 432, 537, 794, 805, 837
Mly113I GGCGCC 1 cut(s) 468
MmeI TCCRAC 2 cut(s) 556, 758
MnlI CCTC 3 cut(s) 315, 850, 873
MseI TTAA 6 cut(s) 228, 273, 416, 531, 584, 618
MslI CAYNNNNRTG 1 cut(s) 593
MspCI CTTAAG 1 cut(s) 583
MunI CAATTG 2 cut(s) 308, 432
Mva1269I GAATGC 1 cut(s) 609
MwoI GCNNNNNNNGC 4 cut(s) 516, 604, 606, 719
NarI GGCGCC 1 cut(s) 468
NdeII GATC 2 cut(s) 862, 866
NlaIII CATG 1 cut(s) 246
NlaIV GGNNCC 2 cut(s) 7, 469
NmuCI GTSAC 1 cut(s) 821
NsbI TGCGCA 1 cut(s) 599
PctI GAATGC 1 cut(s) 609
PfeI GAWTC 2 cut(s) 579, 688
PkrI GCNGC 4 cut(s) 715, 848, 876, 891
PluTI GGCGCC 1 cut(s) 471
PspFI CCCAGC 1 cut(s) 437
PspN4I GGNNCC 2 cut(s) 7, 469
PstI CTGCAG 1 cut(s) 879
PstNI CAGNNNCTG 1 cut(s) 374
RsaI GTAC 3 cut(s) 29, 93, 380
RsaNI GTAC 3 cut(s) 28, 92, 379
RseI CAYNNNNRTG 1 cut(s) 593
SaqAI TTAA 6 cut(s) 228, 273, 416, 531, 584, 618
SatI GCNGC 4 cut(s) 714, 847, 875, 890
Sau3AI GATC 2 cut(s) 862, 866
ScaI AGTACT 1 cut(s) 380
SduI GDGCHC 1 cut(s) 8
SetI ASST 9 cut(s) 11, 106, 228, 373, 657, 765, 778, 803, 891
SfaNI GCATC 1 cut(s) 585
SfcI CTRYAG 1 cut(s) 875
SfoI GGCGCC 1 cut(s) 469
SmiMI CAYNNNNRTG 1 cut(s) 593
SmlI CTYRAG 1 cut(s) 583
SmoI CTYRAG 1 cut(s) 583
Sse9I AATT 9 cut(s) 34, 42, 308, 419, 432, 537, 794, 805, 837
SsiI CCGC 1 cut(s) 510
SspDI GGCGCC 1 cut(s) 467
SspMI CTAG 3 cut(s) 68, 173, 408
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 1 cut(s) 832
TaiI ACGT 2 cut(s) 765, 778
TaqI TCGA 4 cut(s) 593, 613, 809, 865
TaqII GACCGA 1 cut(s) 515
TasI AATT 9 cut(s) 34, 42, 308, 419, 432, 537, 794, 805, 837
TatI WGTACW 3 cut(s) 27, 91, 378
TfiI GAWTC 2 cut(s) 579, 688
Tru1I TTAA 6 cut(s) 228, 273, 416, 531, 584, 618
Tru9I TTAA 6 cut(s) 228, 273, 416, 531, 584, 618
TscAI CASTG 1 cut(s) 876
TseFI GTSAC 1 cut(s) 821
TseI GCWGC 4 cut(s) 713, 846, 874, 889
Tsp45I GTSAC 1 cut(s) 821
TspRI CASTG 1 cut(s) 876
Vha464I CTTAAG 1 cut(s) 583
XspI CTAG 3 cut(s) 68, 173, 408
ZrmI AGTACT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.