Rh3CG358400

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
44259733 .. 44262046
2314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG358400.1

Sequence Viewer

Length: 1749 bp
ATGGTTGAGGTTCTGATGAAAACCTTATTTGTTTCCATACCTCTGTACAGAAACTATATCATTTTCTTGAATCTCTCTTTTCTCTTAGTGGCTTCTACTATCTTGGTTATATACAATTCCCACTCTTCACAAATTCTAGTTCTACGCATTCACAGCAATAATAACGAGCAAGGCTGCGACAGTTTTCTTGGTATAGGTGACTATGAGGAAAAGTGCCTGTACCTTAAATCCGAAAACCCATGTGTCTCCCAAGGCTATATTGATTATCTTTACATCTTCTATTGCAGTTTTGGCAGTTTTCCCTTTTTGGGTTATGGCTTTTTGTTGTTCTGGCTTCTGGTCTTGTTCTATCTACTGGGTAATACAGCTTCTGAATACTTTTGCTCTTCACTTGAGAGTCTATCAAGGCTTTTGCAATTGTCCCCTACAATTGCTGGGGTAACTCTTCTCTCCCTTGGCAATGGAGCCCCTGATGTCTTCTCCAGTTTTGTTTCATTTATGGGTAGTGGTGGGACGAACATTGATGTTGGTCTCAACACAGTTCTGGGAGGTGCCTCCTTTATATCCTGTGTTGTGGTTGGAATCTTAAGCATTTCAATTCGCAAAAGGCTTGTTCGAGTTGACAAATCTGACTTCGTGCGAGACACCTCCTTCTACCTTTTGGTTATCGTGTGCTTGATTCTGATCTTGATTCAGAAAGAAATAGATGTGTGGGCTGCCATGGCTTTCTCTTCACTTTATATTGTTTATGTGATTGGGGTTTACGTATCACATACGCATAGGCGGAATTCTGGTAAAACAAGTGAATCACACAGTAATTTGAGCAACGGTAGTCATGACTTGACAGTACCAATCATGAGTAGCATGGAGAGGGATGGAAATGAAGAGCTTAGTGCTGCAGAGGAAGGAGCTTTAGAACACATTTCTGCCGTAGAAGAAGTCAAGAAAGGCTGCTTTCAACTCCCCCGACCATCAGATTCTTGTCAAATGTTGATCTTCATACTTGAGTTGCCTCTTTATATTCCTAGGAGATTGACAATTCCTGTCGTTTGTGAGGAGAGATGGTCTAAACCATATGCAGTTGCTTCTGTGACACTAGCACCAGTGCTGTTGTCATCCCTTTGGAACCATCAGTATGCAAACGCTACCTTCGAGACTAGCCTTTGGATCTATTTGATTGGATCGATTATTGGACTAGTTTTCGGGTTTGTTGCATGTTTGACAACGGAGAAGTCAAGCCCACCAAAGAAATGCTTATTTCCTTGGCTTGCTGCTGGCTTCTTGATGAGTGTTGCTTGGAGTTACATTACAGCTCAGGAACTTGTGGCCTTGTTAGTCTCAATAGGGTACATATTAGGTGTTAGTCCTTCAATATTAGGACTAACAGTCCTTGCTTGGGGTAATTCACTTGGGGATTTGATAACCAATTTGACCATGGCTTTGAATGGAGGACCAGATGGAGCACAGATTGCCTTTTCTGCCTGTTATGCTGGTCCTATCTTCAACACTCTCTTTGGATTGGGGCTATCATTTGTTGGCTCTTCTTGGTCAAAATACCCTTCAGCTGTTGTTATTCATGGAGATCCATACCTGTTGGAGACGTTGGGTTTGTTGGCAGGAGGCTTGCTATGGGCACTTGTGGTGTTGCCAAGGAGAGATATGACCCTTGATGGGGTCTTGGGGTGCGGTCTTTTAGTTATATACACCATTTCTATGTCTTTGAGGTTAATTCAAACACTCATAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

582

Amino Acids

63.66

Weight (kDa)

5.43

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 109 - 255 1.8e-24 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 423 - 574 6.9e-25 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 551
AciI CCGC 2 cut(s) 784, 1686
AclWI GGATC 3 cut(s) 1175, 1189, 1577
AcsI RAATTY 2 cut(s) 132, 787
AcuI CTGAAG 1 cut(s) 1545
AfaI GTAC 4 cut(s) 47, 221, 849, 1349
AfiI CCNNNNNNNGG 4 cut(s) 308, 1396, 1671, 1672
AflII CTTAAG 1 cut(s) 586
AgsI TTSAA 7 cut(s) 70, 597, 959, 1371, 1444, 1504, 1733
AhdI GACNNNNNGTC 1 cut(s) 1385
AhlI ACTAGT 1 cut(s) 1195
AluBI AGCT 5 cut(s) 368, 889, 911, 1313, 1565
AluI AGCT 5 cut(s) 368, 889, 911, 1313, 1565
Alw21I GWGCWC 1 cut(s) 1465
Alw26I GTCTC 6 cut(s) 250, 536, 636, 1148, 1342, 1592
AlwI GGATC 3 cut(s) 1175, 1189, 1577
AlwNI CAGNNNCTG 1 cut(s) 371
AoxI GGCC 1 cut(s) 1326
ApeKI GCWGC 5 cut(s) 174, 716, 896, 951, 1271
ApoI RAATTY 2 cut(s) 132, 787
ArsI GACNNNNNNTTYG 4 cut(s) 1423, 1455, 1591, 1623
AspA2I CCTAGG 1 cut(s) 1025
AspS9I GGNCC 2 cut(s) 1451, 1493
AsuHPI GGTGA 1 cut(s) 209
AvaII GGWCC 2 cut(s) 1451, 1493
AvrII CCTAGG 1 cut(s) 1025
BaeGI GKGCMC 1 cut(s) 1636
BanI GGYRCC 1 cut(s) 551
BanII GRGCYC 1 cut(s) 469
BarI GAAGNNNNNNTAC 2 cut(s) 352, 384
BbsI GAAGAC 1 cut(s) 469
Bbv12I GWGCWC 1 cut(s) 1465
BbvI GCAGC 5 cut(s) 161, 703, 883, 938, 1258
BccI CCATC 6 cut(s) 869, 979, 1056, 1137, 1451, 1664
BceAI ACGGC 1 cut(s) 914
BcoDI GTCTC 6 cut(s) 250, 536, 636, 1148, 1342, 1592
BcuI ACTAGT 1 cut(s) 1195
BfaI CTAG 5 cut(s) 137, 1026, 1097, 1158, 1196
BfmI CTRYAG 1 cut(s) 897
BfrI CTTAAG 1 cut(s) 586
BisI GCNGC 5 cut(s) 175, 717, 897, 952, 1272
BlnI CCTAGG 1 cut(s) 1025
BlsI GCNGC 5 cut(s) 176, 718, 898, 953, 1273
Bme18I GGWCC 2 cut(s) 1451, 1493
BmeRI GACNNNNNGTC 1 cut(s) 1385
BmgT120I GGNCC 2 cut(s) 1451, 1493
BmiI GGNNCC 3 cut(s) 466, 553, 1127
BmrI ACTGGG 1 cut(s) 365
BmuI ACTGGG 1 cut(s) 365
BpiI GAAGAC 1 cut(s) 469
BpmI CTGGAG 1 cut(s) 466
Bpu10I CCTNAGC 1 cut(s) 1314
BpuEI CTTGAG 2 cut(s) 413, 1025
Bsa29I ATCGAT 1 cut(s) 1184
BsaAI YACGTR 1 cut(s) 766
BsaBI GATNNNNATC 1 cut(s) 683
BsaI GGTCTC 1 cut(s) 536
BsaJI CCNNGG 7 cut(s) 250, 454, 720, 1025, 1262, 1434, 1649
BsaXI ACNNNNNCTCC 2 cut(s) 1049, 1079
Bsc4I CCNNNNNNNGG 4 cut(s) 308, 1396, 1671, 1672
Bse1I ACTGG 3 cut(s) 360, 483, 1103
Bse3DI GCAATG 1 cut(s) 466
Bse8I GATNNNNATC 1 cut(s) 683
BseCI ATCGAT 1 cut(s) 1184
BseDI CCNNGG 7 cut(s) 250, 454, 720, 1025, 1262, 1434, 1649
BseGI GGATG 2 cut(s) 880, 1115
BseJI GATNNNNATC 1 cut(s) 683
BseLI CCNNNNNNNGG 4 cut(s) 308, 1396, 1671, 1672
BseMI GCAATG 1 cut(s) 466
BseMII CTCAG 1 cut(s) 1328
BseNI ACTGG 3 cut(s) 360, 483, 1103
BseRI GAGGAG 1 cut(s) 1070
BseSI GKGCMC 1 cut(s) 1636
BseXI GCAGC 5 cut(s) 161, 703, 883, 938, 1258
BseYI CCCAGC 1 cut(s) 434
BshFI GGCC 1 cut(s) 1328
BshNI GGYRCC 1 cut(s) 551
BshVI ATCGAT 1 cut(s) 1184
BsiHKAI GWGCWC 1 cut(s) 1465
BslFI GGGAC 2 cut(s) 406, 526
BslI CCNNNNNNNGG 4 cut(s) 308, 1396, 1671, 1672
BsmAI GTCTC 6 cut(s) 250, 536, 636, 1148, 1342, 1592
BsmBI CGTCTC 1 cut(s) 1592
BsmFI GGGAC 2 cut(s) 406, 526
BsmI GAATGC 1 cut(s) 147
BsnI GGCC 1 cut(s) 1328
Bso31I GGTCTC 1 cut(s) 536
Bsp1286I GDGCHC 3 cut(s) 469, 1465, 1636
Bsp1407I TGTACA 1 cut(s) 45
Bsp143I GATC 5 cut(s) 684, 993, 1167, 1181, 1582
Bsp19I CCATGG 2 cut(s) 720, 1434
BspACI CCGC 2 cut(s) 784, 1686
BspANI GGCC 1 cut(s) 1328
BspCNI CTCAG 1 cut(s) 1327
BspDI ATCGAT 1 cut(s) 1184
BspHI TCATGA 2 cut(s) 835, 855
BspLI GGNNCC 3 cut(s) 466, 553, 1127
BspMAI CTGCAG 1 cut(s) 901
BspPI GGATC 3 cut(s) 1175, 1189, 1577
BspQI GCTCTTC 3 cut(s) 391, 879, 1546
BspT107I GGYRCC 1 cut(s) 551
BspTI CTTAAG 1 cut(s) 586
BspTNI GGTCTC 1 cut(s) 536
BsrDI GCAATG 1 cut(s) 466
BsrGI TGTACA 1 cut(s) 45
BsrI ACTGG 3 cut(s) 360, 483, 1103
BssECI CCNNGG 7 cut(s) 250, 454, 720, 1025, 1262, 1434, 1649
BssMI GATC 5 cut(s) 684, 993, 1167, 1181, 1582
BssT1I CCWWGG 7 cut(s) 250, 454, 720, 1025, 1262, 1434, 1649
Bst4CI ACNGT 6 cut(s) 182, 541, 815, 830, 847, 1387
Bst6I CTCTTC 6 cut(s) 130, 391, 450, 736, 879, 1546
BstAFI CTTAAG 1 cut(s) 586
BstAPI GCANNNNNTGC 1 cut(s) 1469
BstAUI TGTACA 1 cut(s) 45
BstBAI YACGTR 1 cut(s) 766
BstC8I GCNNGC 3 cut(s) 1269, 1276, 1625
BstDEI CTNAG 3 cut(s) 85, 890, 1314
BstDSI CCRYGG 2 cut(s) 720, 1434
BstF5I GGATG 2 cut(s) 880, 1115
BstKTI GATC 5 cut(s) 687, 996, 1170, 1184, 1585
BstMAI GTCTC 6 cut(s) 250, 536, 636, 1148, 1342, 1592
BstMBI GATC 5 cut(s) 684, 993, 1167, 1181, 1582
BstMWI GCNNNNNNNGC 6 cut(s) 153, 291, 722, 1469, 1478, 1487
BstNSI RCATGY 1 cut(s) 1218
BstSFI CTRYAG 1 cut(s) 897
BstSLI GKGCMC 1 cut(s) 1636
BstSNI TACGTA 1 cut(s) 766
BstV1I GCAGC 5 cut(s) 161, 703, 883, 938, 1258
BstV2I GAAGAC 1 cut(s) 469
BstX2I RGATCY 2 cut(s) 1167, 1582
BstYI RGATCY 2 cut(s) 1167, 1582
Bsu15I ATCGAT 1 cut(s) 1184
BsuRI GGCC 1 cut(s) 1328
BsuTUI ATCGAT 1 cut(s) 1184
BtgI CCRYGG 2 cut(s) 720, 1434
BtsCI GGATG 2 cut(s) 880, 1115
BtsIMutI CAGTG 1 cut(s) 1110
Cac8I GCNNGC 3 cut(s) 1269, 1276, 1625
CaiI CAGNNNCTG 1 cut(s) 371
CciI TCATGA 2 cut(s) 835, 855
Cfr13I GGNCC 2 cut(s) 1451, 1493
ClaI ATCGAT 1 cut(s) 1184
Csp6I GTAC 4 cut(s) 46, 220, 848, 1348
CviAII CATG 9 cut(s) 240, 721, 836, 856, 865, 1215, 1435, 1577, 1746
CviQI GTAC 4 cut(s) 46, 220, 848, 1348
DdeI CTNAG 3 cut(s) 85, 890, 1314
DpnI GATC 5 cut(s) 686, 995, 1169, 1183, 1584
DpnII GATC 5 cut(s) 684, 993, 1167, 1181, 1582
DriI GACNNNNNGTC 1 cut(s) 1385
Eam1104I CTCTTC 6 cut(s) 130, 391, 450, 736, 879, 1546
Eam1105I GACNNNNNGTC 1 cut(s) 1385
EarI CTCTTC 6 cut(s) 130, 391, 450, 736, 879, 1546
EciI GGCGGA 1 cut(s) 799
Eco105I TACGTA 1 cut(s) 766
Eco130I CCWWGG 7 cut(s) 250, 454, 720, 1025, 1262, 1434, 1649
Eco24I GRGCYC 1 cut(s) 469
Eco31I GGTCTC 1 cut(s) 536
Eco47I GGWCC 2 cut(s) 1451, 1493
Eco57I CTGAAG 1 cut(s) 1545
EcoRI GAATTC 1 cut(s) 787
EcoT14I CCWWGG 7 cut(s) 250, 454, 720, 1025, 1262, 1434, 1649
EcoT38I GRGCYC 1 cut(s) 469
ErhI CCWWGG 7 cut(s) 250, 454, 720, 1025, 1262, 1434, 1649
Esp3I CGTCTC 1 cut(s) 1592
FaeI CATG 9 cut(s) 243, 724, 839, 859, 868, 1218, 1438, 1580, 1749
FalI AAGNNNNNCTT 2 cut(s) 1238, 1270
FaqI GGGAC 2 cut(s) 406, 526
FatI CATG 9 cut(s) 239, 720, 835, 855, 864, 1214, 1434, 1576, 1745
FauNDI CATATG 1 cut(s) 1075
Fnu4HI GCNGC 5 cut(s) 175, 717, 897, 952, 1272
FokI GGATG 2 cut(s) 887, 1102
FriOI GRGCYC 1 cut(s) 469
Fsp4HI GCNGC 5 cut(s) 175, 717, 897, 952, 1272
FspBI CTAG 5 cut(s) 137, 1026, 1097, 1158, 1196
GluI GCNGC 5 cut(s) 175, 717, 897, 952, 1272
GsaI CCCAGC 1 cut(s) 438
GsuI CTGGAG 1 cut(s) 466
HaeIII GGCC 1 cut(s) 1328
Hin1II CATG 9 cut(s) 243, 724, 839, 859, 868, 1218, 1438, 1580, 1749
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HinfI GANTC 7 cut(s) 70, 397, 582, 679, 691, 806, 977
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 2 cut(s) 622, 763
Hpy188I TCNGA 7 cut(s) 15, 232, 373, 631, 684, 696, 976
Hpy188III TCNNGA 8 cut(s) 67, 688, 836, 856, 943, 1153, 1282, 1316
Hpy8I GTNNAC 2 cut(s) 622, 763
HpyAV CCTTC 5 cut(s) 661, 899, 1159, 1377, 1569
HpyCH4III ACNGT 6 cut(s) 182, 541, 815, 830, 847, 1387
HpyCH4IV ACGT 2 cut(s) 765, 1601
HpyCH4V TGCA 6 cut(s) 285, 415, 899, 1079, 1139, 1214
HpyF10VI GCNNNNNNNGC 6 cut(s) 153, 291, 722, 1469, 1478, 1487
HpyF3I CTNAG 3 cut(s) 85, 890, 1314
HpySE526I ACGT 2 cut(s) 765, 1601
Hsp92II CATG 9 cut(s) 243, 724, 839, 859, 868, 1218, 1438, 1580, 1749
Kzo9I GATC 5 cut(s) 684, 993, 1167, 1181, 1582
LguI GCTCTTC 3 cut(s) 391, 879, 1546
LmnI GCTCC 3 cut(s) 464, 908, 1460
Lsp1109I GCAGC 5 cut(s) 161, 703, 883, 938, 1258
MaeI CTAG 5 cut(s) 137, 1026, 1097, 1158, 1196
MaeII ACGT 2 cut(s) 765, 1601
MaeIII GTNAC 4 cut(s) 197, 439, 1090, 1301
MalI GATC 5 cut(s) 686, 995, 1169, 1183, 1584
MboI GATC 5 cut(s) 684, 993, 1167, 1181, 1582
MfeI CAATTG 2 cut(s) 416, 429
MflI RGATCY 2 cut(s) 1167, 1582
MhlI GDGCHC 3 cut(s) 469, 1465, 1636
MlyI GAGTC 1 cut(s) 406
MmeI TCCRAC 2 cut(s) 559, 1575
MseI TTAA 3 cut(s) 225, 587, 1727
MslI CAYNNNNRTG 2 cut(s) 1134, 1712
MspA1I CMGCKG 1 cut(s) 1565
MspCI CTTAAG 1 cut(s) 586
MunI CAATTG 2 cut(s) 416, 429
Mva1269I GAATGC 1 cut(s) 147
MwoI GCNNNNNNNGC 6 cut(s) 153, 291, 722, 1469, 1478, 1487
NcoI CCATGG 2 cut(s) 720, 1434
NdeI CATATG 1 cut(s) 1075
NdeII GATC 5 cut(s) 684, 993, 1167, 1181, 1582
NlaIII CATG 9 cut(s) 243, 724, 839, 859, 868, 1218, 1438, 1580, 1749
NlaIV GGNNCC 3 cut(s) 466, 553, 1127
NmuCI GTSAC 2 cut(s) 197, 1090
NspI RCATGY 1 cut(s) 1218
PagI TCATGA 2 cut(s) 835, 855
PciSI GCTCTTC 3 cut(s) 391, 879, 1546
PcsI WCGNNNNNNNCGW 1 cut(s) 1149
PctI GAATGC 1 cut(s) 147
PfeI GAWTC 6 cut(s) 70, 582, 679, 691, 806, 977
PkrI GCNGC 5 cut(s) 176, 718, 898, 953, 1273
PleI GAGTC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 405
Ppu21I YACGTR 1 cut(s) 766
PspFI CCCAGC 1 cut(s) 434
PspN4I GGNNCC 3 cut(s) 466, 553, 1127
PspPI GGNCC 2 cut(s) 1451, 1493
PstI CTGCAG 1 cut(s) 901
PstNI CAGNNNCTG 1 cut(s) 371
PsuI RGATCY 2 cut(s) 1167, 1582
PvuII CAGCTG 1 cut(s) 1565
RsaI GTAC 4 cut(s) 47, 221, 849, 1349
RsaNI GTAC 4 cut(s) 46, 220, 848, 1348
RseI CAYNNNNRTG 2 cut(s) 1134, 1712
SapI GCTCTTC 3 cut(s) 391, 879, 1546
SaqAI TTAA 3 cut(s) 225, 587, 1727
SatI GCNGC 5 cut(s) 175, 717, 897, 952, 1272
Sau3AI GATC 5 cut(s) 684, 993, 1167, 1181, 1582
Sau96I GGNCC 2 cut(s) 1451, 1493
SchI GAGTC 1 cut(s) 406
SduI GDGCHC 3 cut(s) 469, 1465, 1636
SfcI CTRYAG 1 cut(s) 897
SinI GGWCC 2 cut(s) 1451, 1493
SmiMI CAYNNNNRTG 2 cut(s) 1134, 1712
SmlI CTYRAG 3 cut(s) 392, 586, 1004
SmoI CTYRAG 3 cut(s) 392, 586, 1004
SnaBI TACGTA 1 cut(s) 766
SpeI ACTAGT 1 cut(s) 1195
SsiI CCGC 2 cut(s) 784, 1686
SspI AATATT 1 cut(s) 1374
SspMI CTAG 5 cut(s) 137, 1026, 1097, 1158, 1196
StyI CCWWGG 7 cut(s) 250, 454, 720, 1025, 1262, 1434, 1649
TaaI ACNGT 6 cut(s) 182, 541, 815, 830, 847, 1387
TaiI ACGT 2 cut(s) 768, 1604
TaqI TCGA 3 cut(s) 616, 1152, 1184
TatI WGTACW 1 cut(s) 45
TfiI GAWTC 6 cut(s) 70, 582, 679, 691, 806, 977
Tru1I TTAA 3 cut(s) 225, 587, 1727
Tru9I TTAA 3 cut(s) 225, 587, 1727
TscAI CASTG 1 cut(s) 1110
TseFI GTSAC 2 cut(s) 197, 1090
TseI GCWGC 5 cut(s) 174, 716, 896, 951, 1271
Tsp45I GTSAC 2 cut(s) 197, 1090
TspDTI ATGAA 5 cut(s) 32, 483, 897, 988, 1565
TspGWI ACGGA 1 cut(s) 1241
TspRI CASTG 1 cut(s) 1110
Vha464I CTTAAG 1 cut(s) 586
VpaK11BI GGWCC 2 cut(s) 1451, 1493
XapI RAATTY 2 cut(s) 132, 787
XceI RCATGY 1 cut(s) 1218
XcmI CCANNNNNNNNNTGG 1 cut(s) 1432
XmaJI CCTAGG 1 cut(s) 1025
XspI CTAG 5 cut(s) 137, 1026, 1097, 1158, 1196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.