MD14G1008700.v1.1

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0009055
Physical Location & Seq
Reverse (-)
876342 .. 877357
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1008700.v1.1.491

Sequence Viewer

Length: 993 bp
ATGGGTACCTTAGTTTTCTTACCAAAGTACAAAAACTACATAATTTTCCTGAACATCTCGTTTCTGATAGTGGGATGCGCTTTCTTGGTTGTACATTCCTATGCTCCAGATTTTCTGGTTCTAAGCACTTCTGGGGTTTCCAGAATTTCTGGTTCACTAGATTGCAAGGGTTTTCTTAGTTTAGATGACTACAAAGCAAAGTGCTTTTACCTTAAATCCAACAACCCATGTGTCTCCCAAGGCTATATAAACTATCTAAACATTTTCTACTGCAATTTTGGAACTTTTCCTCAATTGGGTTATTGCTGTATGTTTCTTTGGCTTCTGGTTTTGTTCTATGTGTTGGGGAACACAGCTTCTGAGTACTTATGTTCTTCACTTGATAGTTTATCTAGGTTGTTAAAATTGTCCCCCACAATTGCTGGGGTAACTCTGCTTTCTCTTGGCAATGGAGCCCCTGATGTGTTTTCCAGTCTTGTTTCGTTTATGGGTGGCGGGACTGGCGAAATTGGTCTTAATACAGTTCTGGGGGGTGCTTCCTTTGTGTCTTGTGCTGTGGTTGGAATCTTAAGCATTTCAATGAGCAAAAGGCGCATTCGAGTTCACAAAGCGGACTTTGTGAGAGATATTTGCTTCTACCTTTTGGTCATTGTATGTTTGGGTGTTATCTTGATTCACAAGGAAATAGATGTGTGGGCTGCAATGGCTCTCTCTTCACTCTATATTGCTTATGTGATTGTGGTTTACGTCTCACACACACATTGGAAGAAAAGCGTTGAATTGAGCCGTAATTCGAGCAATGAGAGTGACTTGACTGTGCCAATTCTTATCAGCATTGAAGAGGAAGATCTCAGTGCTGCAGAGGAAGGAGCTGCACAAGGCAGTTCTGAAGTAGTAGAAGTCAAGAAATGCTGCTCCAATCTTAGATCATCGGCTTTTTTTCGCACGCTGATTTTCATACTTGAGCTCCGCTTTATCTGCCTAGGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_Ca_ex

Protein Analysis

331

Amino Acids

36.22

Weight (kDa)

6.51

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 106 - 249 4.3e-25 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 5
AccB1I GGYRCC 1 cut(s) 5
AciI CCGC 3 cut(s) 495, 611, 970
AcsI RAATTY 1 cut(s) 144
AcuI CTGAAG 1 cut(s) 909
AfaI GTAC 4 cut(s) 7, 29, 93, 365
AfiI CCNNNNNNNGG 1 cut(s) 296
AflII CTTAAG 1 cut(s) 568
AgsI TTSAA 3 cut(s) 579, 779, 839
AluBI AGCT 3 cut(s) 356, 872, 967
AluI AGCT 3 cut(s) 356, 872, 967
Alw21I GWGCWC 1 cut(s) 969
Alw26I GTCTC 2 cut(s) 238, 754
AlwNI CAGNNNCTG 1 cut(s) 359
ApeKI GCWGC 4 cut(s) 698, 857, 872, 912
ApoI RAATTY 1 cut(s) 144
Asp718I GGTACC 1 cut(s) 5
AspA2I CCTAGG 1 cut(s) 982
AspLEI GCGC 2 cut(s) 80, 594
AvrII CCTAGG 1 cut(s) 982
BaeI ACNNNNGTAYC 1 cut(s) 30
BanI GGYRCC 1 cut(s) 5
BanII GRGCYC 2 cut(s) 457, 969
Bbv12I GWGCWC 1 cut(s) 969
BbvI GCAGC 4 cut(s) 685, 844, 859, 899
BceAI ACGGC 1 cut(s) 771
BcoDI GTCTC 2 cut(s) 238, 754
BfaI CTAG 3 cut(s) 158, 393, 983
BfmI CTRYAG 1 cut(s) 858
BfrI CTTAAG 1 cut(s) 568
BglII AGATCT 1 cut(s) 847
BisI GCNGC 4 cut(s) 699, 858, 873, 913
BlnI CCTAGG 1 cut(s) 982
BlsI GCNGC 4 cut(s) 700, 859, 874, 914
BmcAI AGTACT 1 cut(s) 365
BmiI GGNNCC 2 cut(s) 7, 454
BmsI GCATC 1 cut(s) 65
BpmI CTGGAG 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 983
BsaJI CCNNGG 2 cut(s) 238, 982
BsaXI ACNNNNNCTCC 2 cut(s) 951, 981
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse1I ACTGG 2 cut(s) 471, 505
Bse3DI GCAATG 3 cut(s) 454, 708, 805
BseDI CCNNGG 2 cut(s) 238, 982
BseGI GGATG 1 cut(s) 80
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMI GCAATG 3 cut(s) 454, 708, 805
BseMII CTCAG 2 cut(s) 351, 865
BseNI ACTGG 2 cut(s) 471, 505
BseXI GCAGC 4 cut(s) 685, 844, 859, 899
BseYI CCCAGC 1 cut(s) 422
BsgI GTGCAG 1 cut(s) 858
BshNI GGYRCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 969
BslFI GGGAC 2 cut(s) 394, 511
BslI CCNNNNNNNGG 1 cut(s) 296
BsmAI GTCTC 2 cut(s) 238, 754
BsmBI CGTCTC 1 cut(s) 754
BsmFI GGGAC 2 cut(s) 394, 511
BsmI GAATGC 1 cut(s) 594
Bsp1286I GDGCHC 2 cut(s) 457, 969
Bsp1407I TGTACA 1 cut(s) 91
Bsp143I GATC 2 cut(s) 847, 926
BspACI CCGC 3 cut(s) 495, 611, 970
BspCNI CTCAG 2 cut(s) 352, 864
BspLI GGNNCC 2 cut(s) 7, 454
BspMAI CTGCAG 1 cut(s) 862
BspT107I GGYRCC 1 cut(s) 5
BspTI CTTAAG 1 cut(s) 568
BsrDI GCAATG 3 cut(s) 454, 708, 805
BsrGI TGTACA 1 cut(s) 91
BsrI ACTGG 2 cut(s) 471, 505
BssECI CCNNGG 2 cut(s) 238, 982
BssMI GATC 2 cut(s) 847, 926
BssT1I CCWWGG 2 cut(s) 238, 982
Bst4CI ACNGT 2 cut(s) 523, 817
Bst6I CTCTTC 2 cut(s) 718, 834
BstAFI CTTAAG 1 cut(s) 568
BstAUI TGTACA 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 947
BstDEI CTNAG 6 cut(s) 10, 122, 176, 360, 851, 923
BstF5I GGATG 1 cut(s) 80
BstHHI GCGC 2 cut(s) 80, 594
BstKTI GATC 2 cut(s) 850, 929
BstMAI GTCTC 2 cut(s) 238, 754
BstMBI GATC 2 cut(s) 847, 926
BstMWI GCNNNNNNNGC 4 cut(s) 501, 591, 704, 978
BstSFI CTRYAG 1 cut(s) 858
BstV1I GCAGC 4 cut(s) 685, 844, 859, 899
BstX2I RGATCY 1 cut(s) 847
BstYI RGATCY 1 cut(s) 847
BtsCI GGATG 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 859
Cac8I GCNNGC 1 cut(s) 947
CaiI CAGNNNCTG 1 cut(s) 359
CfoI GCGC 2 cut(s) 80, 594
Csp6I GTAC 4 cut(s) 6, 28, 92, 364
CviAII CATG 1 cut(s) 228
CviQI GTAC 4 cut(s) 6, 28, 92, 364
DdeI CTNAG 6 cut(s) 10, 122, 176, 360, 851, 923
DpnI GATC 2 cut(s) 849, 928
DpnII GATC 2 cut(s) 847, 926
Eam1104I CTCTTC 2 cut(s) 718, 834
EarI CTCTTC 2 cut(s) 718, 834
Ecl136II GAGCTC 1 cut(s) 967
Eco130I CCWWGG 2 cut(s) 238, 982
Eco24I GRGCYC 2 cut(s) 457, 969
Eco53kI GAGCTC 1 cut(s) 967
Eco57I CTGAAG 1 cut(s) 909
EcoICRI GAGCTC 1 cut(s) 967
EcoT14I CCWWGG 2 cut(s) 238, 982
EcoT38I GRGCYC 2 cut(s) 457, 969
ErhI CCWWGG 2 cut(s) 238, 982
Esp3I CGTCTC 1 cut(s) 754
FaeI CATG 1 cut(s) 231
FaqI GGGAC 2 cut(s) 394, 511
FatI CATG 1 cut(s) 227
FauI CCCGC 1 cut(s) 488
Fnu4HI GCNGC 4 cut(s) 699, 858, 873, 913
FokI GGATG 1 cut(s) 87
FriOI GRGCYC 2 cut(s) 457, 969
Fsp4HI GCNGC 4 cut(s) 699, 858, 873, 913
FspBI CTAG 3 cut(s) 158, 393, 983
GlaI GCGC 2 cut(s) 79, 593
GluI GCNGC 4 cut(s) 699, 858, 873, 913
GsaI CCCAGC 1 cut(s) 426
GsuI CTGGAG 1 cut(s) 90
HhaI GCGC 2 cut(s) 80, 594
Hin1II CATG 1 cut(s) 231
Hin6I GCGC 2 cut(s) 78, 592
HinP1I GCGC 2 cut(s) 78, 592
HinfI GANTC 2 cut(s) 564, 673
Hpy166II GTNNAC 3 cut(s) 155, 604, 745
Hpy188I TCNGA 3 cut(s) 66, 361, 889
Hpy188III TCNNGA 5 cut(s) 49, 107, 141, 670, 904
Hpy8I GTNNAC 3 cut(s) 155, 604, 745
HpyAV CCTTC 1 cut(s) 860
HpyCH4III ACNGT 2 cut(s) 523, 817
HpyCH4IV ACGT 1 cut(s) 747
HpyCH4V TGCA 5 cut(s) 165, 273, 701, 860, 875
HpyF10VI GCNNNNNNNGC 4 cut(s) 501, 591, 704, 978
HpyF3I CTNAG 6 cut(s) 10, 122, 176, 360, 851, 923
HpySE526I ACGT 1 cut(s) 747
Hsp92II CATG 1 cut(s) 231
HspAI GCGC 2 cut(s) 78, 592
KpnI GGTACC 1 cut(s) 9
Kzo9I GATC 2 cut(s) 847, 926
LmnI GCTCC 5 cut(s) 109, 452, 869, 920, 972
Lsp1109I GCAGC 4 cut(s) 685, 844, 859, 899
LweI GCATC 1 cut(s) 65
MaeI CTAG 3 cut(s) 158, 393, 983
MaeII ACGT 1 cut(s) 747
MaeIII GTNAC 2 cut(s) 427, 806
MalI GATC 2 cut(s) 849, 928
MboI GATC 2 cut(s) 847, 926
MboII GAAGA 5 cut(s) 366, 705, 778, 851, 857
MfeI CAATTG 2 cut(s) 293, 417
MflI RGATCY 1 cut(s) 847
MhlI GDGCHC 2 cut(s) 457, 969
MmeI TCCRAC 2 cut(s) 243, 541
MnlI CCTC 3 cut(s) 300, 835, 856
MseI TTAA 4 cut(s) 213, 401, 516, 569
MslI CAYNNNNRTG 2 cut(s) 99, 578
MspCI CTTAAG 1 cut(s) 568
MunI CAATTG 2 cut(s) 293, 417
Mva1269I GAATGC 1 cut(s) 594
MwoI GCNNNNNNNGC 4 cut(s) 501, 591, 704, 978
NdeII GATC 2 cut(s) 847, 926
NlaIII CATG 1 cut(s) 231
NlaIV GGNNCC 2 cut(s) 7, 454
NmuCI GTSAC 1 cut(s) 806
PctI GAATGC 1 cut(s) 594
PfeI GAWTC 2 cut(s) 564, 673
PkrI GCNGC 4 cut(s) 700, 859, 874, 914
Psp124BI GAGCTC 1 cut(s) 969
PspFI CCCAGC 1 cut(s) 422
PspN4I GGNNCC 2 cut(s) 7, 454
PstI CTGCAG 1 cut(s) 862
PstNI CAGNNNCTG 1 cut(s) 359
PsuI RGATCY 1 cut(s) 847
RsaI GTAC 4 cut(s) 7, 29, 93, 365
RsaNI GTAC 4 cut(s) 6, 28, 92, 364
RseI CAYNNNNRTG 2 cut(s) 99, 578
SacI GAGCTC 1 cut(s) 969
SaqAI TTAA 4 cut(s) 213, 401, 516, 569
SatI GCNGC 4 cut(s) 699, 858, 873, 913
Sau3AI GATC 2 cut(s) 847, 926
ScaI AGTACT 1 cut(s) 365
SduI GDGCHC 2 cut(s) 457, 969
SetI ASST 8 cut(s) 11, 213, 358, 398, 642, 750, 874, 969
SfaNI GCATC 1 cut(s) 65
SfcI CTRYAG 1 cut(s) 858
SmiMI CAYNNNNRTG 2 cut(s) 99, 578
SmlI CTYRAG 2 cut(s) 568, 962
SmoI CTYRAG 2 cut(s) 568, 962
SsiI CCGC 3 cut(s) 495, 611, 970
SspMI CTAG 3 cut(s) 158, 393, 983
SstI GAGCTC 1 cut(s) 969
StyI CCWWGG 2 cut(s) 238, 982
TaaI ACNGT 2 cut(s) 523, 817
TaiI ACGT 1 cut(s) 750
TaqI TCGA 2 cut(s) 598, 794
TatI WGTACW 3 cut(s) 27, 91, 363
TfiI GAWTC 2 cut(s) 564, 673
Tru1I TTAA 4 cut(s) 213, 401, 516, 569
Tru9I TTAA 4 cut(s) 213, 401, 516, 569
TscAI CASTG 1 cut(s) 859
TseFI GTSAC 1 cut(s) 806
TseI GCWGC 4 cut(s) 698, 857, 872, 912
Tsp45I GTSAC 1 cut(s) 806
TspDTI ATGAA 1 cut(s) 946
TspRI CASTG 1 cut(s) 859
Vha464I CTTAAG 1 cut(s) 568
XapI RAATTY 1 cut(s) 144
XmaJI CCTAGG 1 cut(s) 982
XspI CTAG 3 cut(s) 158, 393, 983
ZrmI AGTACT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.