AT5G18140

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013134
Physical Location & Seq
Forward (+)
5998127 .. 6000519
2393 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G18140.1

Sequence Viewer

Length: 1002 bp
ATGCAGACTCACCTTTTGGTGGGACCTATCCCACTCAAAGGCTACCGTCGATTCTCTTCCTCCTCCTTCTCCGGCGATCTCCTCCCTCCGTCGTCTAACCCTATCGGCCGAGACCTATTCCCTCACCGTCGAAGGCACCGCGACGGCAAATCTCGGAGTTACCGTAATCGCTCGAAAACGACGATTACTAGTGCTGCGTTTTCTTCAAGTTCTAATACCGGCGGGCAGAATCATTACGCTGTTTTGGGCATCGCTCGAAACGCCACACAAGGTGACATCAAGAGAGCTTATCGTTTGCTAGCTCGAAAGTTTCATCCTGATGTTAATAAGGACTCTAAAGCCGGAGAGCTATTCAAGAGTGTCCGTTGTTCCTACGAAGTACTATCTAATGAAGCTACAAGGACTCAGTACGACAGAGCACTTAAACTTCAAGAAAATTCCCGGTTCCATAGAGTGAAAAGGCACAGCTACACCCCTGAGGTTGAAGATGCCATGAAGTATTACTACACCTGGTCTGAGAAAAGACAAAGATCCAGACACGGGAGATTCTATGGACACTATTCTACATATCCAAACTCACATTTCTACGCTGAGACCGAGCCGCAAGAAGAAGAAGGAGTAGAAACAGCACCAGACCAGCGAGACTCATTTGTTGAAGCTCTCAAATCCGCCTTCTTATCGATGTTTCTTCTATATACATTCGGTTGCCTAGCATCTCTCACATTTAGCACATTCACAGCGTTGCTCGACAAGGAACTCGACATGGGTTACAAAGTCGGATTCATGATCGCTTGGATACTTGGCGGAAAAGGCGGTATCCTTCTTACTCTCTGCTTAACATTTGCAAGCTGGCTCTGTGGGAAAGCAAGCAGCAGCGTGGTGGTTCTTGTGTTAGTAGCAATGTGGGTTGGCTCTAATTTAGCTAGACATGCTCCTCTTCCACAAGGTGCTCTTCTCACCCTCCTCTACATGTCAATCAAACTTCAAGTCGACTCAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

333

Amino Acids

37.62

Weight (kDa)

9.69

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 77 - 138 3.8e-20 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013134)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18140
fragaria_vesca FvH4_1g28130 FvH4_1g28130
malus_domestica MD12G1003800.v1.1
prunus_persica Prupe.7G004300_v2.0.a1
pyrus_communis pycom12g00320
rosa_chinensis RchiOBHm_Chr3g0497071
rosa_laevigata RLG00000022482
rosa_multiflora Rmu_co8330937.1_g000001 Rmu_sc0011396.1_g000005 Rmu_ssc0000003.1_g000038
rosa_roxburghii Rroxscaffold_6G00388410
rosa_rugosa Rorug03G0289400
rosa_samantha Rh3AG333900 Rh3BG371000 Rh3CG367900 Rh3DG368900
rosa_wichuraiana Rw3G029310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 135
AccI GTMKAC 1 cut(s) 990
AccII CGCG 1 cut(s) 141
AciI CCGC 6 cut(s) 139, 222, 602, 669, 804, 813
AclWI GGATC 1 cut(s) 525
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 1 cut(s) 436
AdeI CACNNNGTG 2 cut(s) 272, 947
AfaI GTAC 2 cut(s) 381, 410
AfiI CCNNNNNNNGG 3 cut(s) 19, 38, 540
AflIII ACRYGT 1 cut(s) 969
AgsI TTSAA 6 cut(s) 207, 355, 431, 485, 656, 986
AhlI ACTAGT 1 cut(s) 188
AjnI CCWGG 1 cut(s) 509
AluBI AGCT 8 cut(s) 287, 302, 349, 395, 468, 659, 849, 923
AluI AGCT 8 cut(s) 287, 302, 349, 395, 468, 659, 849, 923
Alw21I GWGCWC 2 cut(s) 421, 952
Alw26I GTCTC 3 cut(s) 105, 587, 636
AlwI GGATC 1 cut(s) 525
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 3 cut(s) 194, 870, 873
ApoI RAATTY 1 cut(s) 436
ArsI GACNNNNNNTTYG 2 cut(s) 30, 972
AspS9I GGNCC 1 cut(s) 23
AsuC2I CCSGG 1 cut(s) 442
AsuHPI GGTGA 3 cut(s) 116, 284, 949
AsuNHI GCTAGC 1 cut(s) 298
AvaII GGWCC 1 cut(s) 23
AxyI CCTNAGG 1 cut(s) 477
BanI GGYRCC 1 cut(s) 135
BarI GAAGNNNNNNTAC 2 cut(s) 488, 520
Bbv12I GWGCWC 2 cut(s) 421, 952
BbvI GCAGC 3 cut(s) 181, 882, 885
BceAI ACGGC 1 cut(s) 160
BciT130I CCWGG 1 cut(s) 511
BciVI GTATCC 2 cut(s) 789, 827
BcnI CCSGG 1 cut(s) 442
BcoDI GTCTC 3 cut(s) 105, 587, 636
BcuI ACTAGT 1 cut(s) 188
BfaI CTAG 4 cut(s) 189, 299, 710, 924
BfuI GTATCC 2 cut(s) 789, 827
BisI GCNGC 4 cut(s) 195, 602, 871, 874
BlsI GCNGC 4 cut(s) 196, 603, 872, 875
BmcAI AGTACT 1 cut(s) 381
Bme1390I CCNGG 2 cut(s) 442, 511
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 3 cut(s) 24, 137, 446
BmrFI CCNGG 2 cut(s) 442, 511
BmsI GCATC 3 cut(s) 258, 478, 722
BmtI GCTAGC 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 442
Bsa29I ATCGAT 1 cut(s) 680
BsaI GGTCTC 2 cut(s) 105, 587
BsaXI ACNNNNNCTCC 2 cut(s) 148, 178
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 38, 540
Bse118I RCCGGY 1 cut(s) 218
Bse21I CCTNAGG 1 cut(s) 477
Bse3DI GCAATG 1 cut(s) 906
BseBI CCWGG 1 cut(s) 511
BseCI ATCGAT 1 cut(s) 680
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 3 cut(s) 19, 38, 540
BseMI GCAATG 1 cut(s) 906
BseMII CTCAG 4 cut(s) 419, 468, 507, 582
BseRI GAGGAG 4 cut(s) 52, 71, 924, 953
BseX3I CGGCCG 1 cut(s) 106
BseXI GCAGC 3 cut(s) 181, 882, 885
Bsh1236I CGCG 1 cut(s) 141
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 135
BshVI ATCGAT 1 cut(s) 680
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 2 cut(s) 421, 952
BsiSI CCGG 4 cut(s) 72, 219, 342, 442
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 3 cut(s) 19, 38, 540
BsmAI GTCTC 3 cut(s) 105, 587, 636
BsmFI GGGAC 1 cut(s) 36
BsnI GGCC 1 cut(s) 108
Bso31I GGTCTC 2 cut(s) 105, 587
Bsp1286I GDGCHC 2 cut(s) 421, 952
Bsp143I GATC 3 cut(s) 76, 530, 786
BspACI CCGC 6 cut(s) 139, 222, 602, 669, 804, 813
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 4 cut(s) 418, 469, 508, 583
BspDI ATCGAT 1 cut(s) 680
BspFNI CGCG 1 cut(s) 141
BspHI TCATGA 1 cut(s) 783
BspLI GGNNCC 3 cut(s) 24, 137, 446
BspOI GCTAGC 1 cut(s) 302
BspPI GGATC 1 cut(s) 525
BspQI GCTCTTC 1 cut(s) 957
BspT107I GGYRCC 1 cut(s) 135
BspTNI GGTCTC 2 cut(s) 105, 587
BsrDI GCAATG 1 cut(s) 906
BsrFI RCCGGY 1 cut(s) 218
BssAI RCCGGY 1 cut(s) 218
BssMI GATC 3 cut(s) 76, 530, 786
Bst2UI CCWGG 1 cut(s) 511
Bst4CI ACNGT 3 cut(s) 47, 128, 164
Bst6I CTCTTC 3 cut(s) 61, 942, 957
BstC8I GCNNGC 5 cut(s) 224, 300, 847, 851, 868
BstDEI CTNAG 4 cut(s) 405, 477, 516, 591
BstF5I GGATG 1 cut(s) 313
BstFNI CGCG 1 cut(s) 141
BstKTI GATC 3 cut(s) 79, 533, 789
BstMAI GTCTC 3 cut(s) 105, 587, 636
BstMBI GATC 3 cut(s) 76, 530, 786
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 3 cut(s) 260, 810, 929
BstNI CCWGG 1 cut(s) 511
BstNSI RCATGY 2 cut(s) 932, 973
BstSCI CCNGG 2 cut(s) 440, 509
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 3 cut(s) 181, 882, 885
BstX2I RGATCY 1 cut(s) 530
BstYI RGATCY 1 cut(s) 530
BstZI CGGCCG 1 cut(s) 106
Bsu15I ATCGAT 1 cut(s) 680
Bsu36I CCTNAGG 1 cut(s) 477
BsuI GTATCC 2 cut(s) 789, 827
BsuRI GGCC 1 cut(s) 108
BsuTUI ATCGAT 1 cut(s) 680
BtgZI GCGATG 1 cut(s) 235
BtsCI GGATG 1 cut(s) 313
Cac8I GCNNGC 5 cut(s) 224, 300, 847, 851, 868
CciI TCATGA 1 cut(s) 783
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 1 cut(s) 23
ClaI ATCGAT 1 cut(s) 680
CsiI ACCWGGT 1 cut(s) 509
Csp6I GTAC 2 cut(s) 380, 409
CviAII CATG 5 cut(s) 493, 763, 784, 929, 970
CviQI GTAC 2 cut(s) 380, 409
DdeI CTNAG 4 cut(s) 405, 477, 516, 591
DpnI GATC 3 cut(s) 78, 532, 788
DpnII GATC 3 cut(s) 76, 530, 786
DraIII CACNNNGTG 2 cut(s) 272, 947
EaeI YGGCCR 1 cut(s) 106
EagI CGGCCG 1 cut(s) 106
Eam1104I CTCTTC 3 cut(s) 61, 942, 957
EarI CTCTTC 3 cut(s) 61, 942, 957
EciI GGCGGA 2 cut(s) 658, 819
EclXI CGGCCG 1 cut(s) 106
Eco31I GGTCTC 2 cut(s) 105, 587
Eco47I GGWCC 1 cut(s) 23
Eco52I CGGCCG 1 cut(s) 106
Eco81I CCTNAGG 1 cut(s) 477
EcoO109I RGGNCCY 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 509
FaeI CATG 5 cut(s) 496, 766, 787, 932, 973
FalI AAGNNNNNCTT 2 cut(s) 936, 968
FaqI GGGAC 1 cut(s) 36
FatI CATG 5 cut(s) 492, 762, 783, 928, 969
FauI CCCGC 1 cut(s) 215
FblI GTMKAC 1 cut(s) 990
Fnu4HI GCNGC 4 cut(s) 195, 602, 871, 874
FokI GGATG 1 cut(s) 300
Fsp4HI GCNGC 4 cut(s) 195, 602, 871, 874
FspBI CTAG 4 cut(s) 189, 299, 710, 924
GluI GCNGC 4 cut(s) 195, 602, 871, 874
HaeIII GGCC 1 cut(s) 108
HapII CCGG 4 cut(s) 72, 219, 342, 442
Hin1II CATG 5 cut(s) 496, 766, 787, 932, 973
HincII GTYRAC 1 cut(s) 991
HindII GTYRAC 1 cut(s) 991
HinfI GANTC 9 cut(s) 7, 51, 229, 332, 403, 546, 644, 780, 992
HpaII CCGG 4 cut(s) 72, 219, 342, 442
HphI GGTGA 3 cut(s) 116, 284, 949
Hpy166II GTNNAC 1 cut(s) 991
Hpy188I TCNGA 3 cut(s) 156, 517, 779
Hpy188III TCNNGA 6 cut(s) 280, 317, 355, 431, 534, 784
Hpy8I GTNNAC 1 cut(s) 991
Hpy99I CGWCG 5 cut(s) 51, 94, 132, 146, 184
HpyAV CCTTC 5 cut(s) 76, 126, 608, 682, 830
HpyCH4III ACNGT 3 cut(s) 47, 128, 164
HpyCH4V TGCA 2 cut(s) 4, 845
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 810, 929
HpyF3I CTNAG 4 cut(s) 405, 477, 516, 591
Hsp92II CATG 5 cut(s) 496, 766, 787, 932, 973
Kzo9I GATC 3 cut(s) 76, 530, 786
LguI GCTCTTC 1 cut(s) 957
LmnI GCTCC 1 cut(s) 937
Lsp1109I GCAGC 3 cut(s) 181, 882, 885
LweI GCATC 3 cut(s) 258, 478, 722
MabI ACCWGGT 1 cut(s) 509
MaeI CTAG 4 cut(s) 189, 299, 710, 924
MaeIII GTNAC 3 cut(s) 158, 272, 767
MalI GATC 3 cut(s) 78, 532, 788
MboI GATC 3 cut(s) 76, 530, 786
MboII GAAGA 8 cut(s) 48, 195, 497, 620, 623, 680, 929, 944
MflI RGATCY 1 cut(s) 530
MhlI GDGCHC 2 cut(s) 421, 952
MluCI AATT 2 cut(s) 436, 916
MlyI GAGTC 4 cut(s) 326, 397, 638, 986
MmeI TCCRAC 1 cut(s) 757
MnlI CCTC 9 cut(s) 70, 73, 92, 96, 132, 472, 945, 971, 974
MseI TTAA 3 cut(s) 324, 423, 836
MslI CAYNNNNRTG 1 cut(s) 318
MspI CCGG 4 cut(s) 72, 219, 342, 442
MspR9I CCNGG 2 cut(s) 442, 511
MvaI CCWGG 1 cut(s) 511
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 3 cut(s) 260, 810, 929
NciI CCSGG 1 cut(s) 442
NdeII GATC 3 cut(s) 76, 530, 786
NheI GCTAGC 1 cut(s) 298
NlaIII CATG 5 cut(s) 496, 766, 787, 932, 973
NlaIV GGNNCC 3 cut(s) 24, 137, 446
NmeAIII GCCGAG 1 cut(s) 134
NmuCI GTSAC 1 cut(s) 272
NspI RCATGY 2 cut(s) 932, 973
PagI TCATGA 1 cut(s) 783
PciI ACATGT 1 cut(s) 969
PciSI GCTCTTC 1 cut(s) 957
PcsI WCGNNNNNNNCGW 3 cut(s) 160, 179, 594
PfeI GAWTC 4 cut(s) 51, 229, 546, 780
PkrI GCNGC 4 cut(s) 196, 603, 872, 875
PleI GAGTC 4 cut(s) 326, 397, 638, 986
PpsI GAGTC 4 cut(s) 326, 397, 638, 986
PpuMI RGGWCCY 1 cut(s) 23
PscI ACATGT 1 cut(s) 969
Psp5II RGGWCCY 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 509
PspGI CCWGG 1 cut(s) 509
PspN4I GGNNCC 3 cut(s) 24, 137, 446
PspPI GGNCC 1 cut(s) 23
PspPPI RGGWCCY 1 cut(s) 23
PsuI RGATCY 1 cut(s) 530
RsaI GTAC 2 cut(s) 381, 410
RsaNI GTAC 2 cut(s) 380, 409
RseI CAYNNNNRTG 1 cut(s) 318
SalI GTCGAC 1 cut(s) 989
SapI GCTCTTC 1 cut(s) 957
SaqAI TTAA 3 cut(s) 324, 423, 836
SatI GCNGC 4 cut(s) 195, 602, 871, 874
Sau3AI GATC 3 cut(s) 76, 530, 786
Sau96I GGNCC 1 cut(s) 23
ScaI AGTACT 1 cut(s) 381
SchI GAGTC 4 cut(s) 326, 397, 638, 986
ScrFI CCNGG 2 cut(s) 442, 511
SduI GDGCHC 2 cut(s) 421, 952
SexAI ACCWGGT 1 cut(s) 509
SfaNI GCATC 3 cut(s) 258, 478, 722
SinI GGWCC 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 318
SpeI ACTAGT 1 cut(s) 188
Sse9I AATT 2 cut(s) 436, 916
SsiI CCGC 6 cut(s) 139, 222, 602, 669, 804, 813
SspMI CTAG 4 cut(s) 189, 299, 710, 924
StyD4I CCNGG 2 cut(s) 440, 509
TaaI ACNGT 3 cut(s) 47, 128, 164
TaqI TCGA 9 cut(s) 49, 130, 173, 256, 304, 680, 747, 759, 990
TaqII GACCGA 1 cut(s) 611
TasI AATT 2 cut(s) 436, 916
TatI WGTACW 1 cut(s) 379
TauI GCSGC 1 cut(s) 604
TfiI GAWTC 4 cut(s) 51, 229, 546, 780
Tru1I TTAA 3 cut(s) 324, 423, 836
Tru9I TTAA 3 cut(s) 324, 423, 836
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 3 cut(s) 194, 870, 873
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 4 cut(s) 302, 405, 509, 772
TspGWI ACGGA 2 cut(s) 78, 353
VpaK11BI GGWCC 1 cut(s) 23
XapI RAATTY 1 cut(s) 436
XceI RCATGY 2 cut(s) 932, 973
XmiI GTMKAC 1 cut(s) 990
XspI CTAG 4 cut(s) 189, 299, 710, 924
ZrmI AGTACT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.