Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8330937.1

Orthogroup ID

OG0013134

Physical Location & Seq

Genomic Coordinates Reverse (-)

535 .. 801

Gene Structure 267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8330937.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

atggccttgtttgataggaagttggatgctggatataagattggttacgtcattgcatggatcttgggtgggaagggtggtatcttgctcactctgtgtttatcttttgcaagttgggtttgtggaaaaaccagcagcagtatggttgctctggtggtggtagccatgtgggttggctccaatcttgcaagatttgcaccacttccgcaaggtgctcttcttacactcctctacatgtctatcaagctacaaggtgatttgaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

88

Amino Acids

9.41

Weight (kDa)

9.39

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18140
fragaria_vesca	FvH4_1g28130 FvH4_1g28130
malus_domestica	MD12G1003800.v1.1
prunus_persica	Prupe.7G004300_v2.0.a1
pyrus_communis	pycom12g00320
rosa_chinensis	RchiOBHm_Chr3g0497071
rosa_laevigata	RLG00000022482
rosa_multiflora	Rmu_co8330937.1_g000001 Rmu_sc0011396.1_g000005 Rmu_ssc0000003.1_g000038
rosa_roxburghii	Rroxscaffold_6G00388410
rosa_rugosa	Rorug03G0289400
rosa_samantha	Rh3AG333900 Rh3BG371000 Rh3CG367900 Rh3DG368900
rosa_wichuraiana	Rw3G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	206
AclWI	GGATC	1 cut(s)	68
AdeI	CACNNNGTG	1 cut(s)	96
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	262
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw21I	GWGCWC	1 cut(s)	217
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	147
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	178
BmsI	GCATC	1 cut(s)	16
Bse3DI	GCAATG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	51
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	147
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	1 cut(s)	206
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	178
BspPI	GGATC	1 cut(s)	68
BspQI	GCTCTTC	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	51
BssMI	GATC	1 cut(s)	60
Bst6I	CTCTTC	1 cut(s)	222
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNSI	RCATGY	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	31
CviAII	CATG	3 cut(s)	57, 166, 235
CviJI	RGCY	4 cut(s)	5, 164, 177, 247
CviKI_1	RGCY	4 cut(s)	5, 164, 177, 247
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
DraIII	CACNNNGTG	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
FaeI	CATG	3 cut(s)	60, 169, 238
FaiI	YATR	5 cut(s)	36, 58, 143, 167, 236
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FatI	CATG	3 cut(s)	56, 165, 234
Fnu4HI	GCNGC	1 cut(s)	136
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	136
GluI	GCNGC	1 cut(s)	136
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	60, 169, 238
HphI	GGTGA	1 cut(s)	266
HpyAV	CCTTC	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	4 cut(s)	56, 110, 188, 197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	3 cut(s)	60, 169, 238
Kzo9I	GATC	1 cut(s)	60
LguI	GCTCTTC	1 cut(s)	222
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	3 cut(s)	15, 137, 145
Lsp1109I	GCAGC	1 cut(s)	147
LweI	GCATC	1 cut(s)	16
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	1 cut(s)	209
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	1 cut(s)	262
MnlI	CCTC	1 cut(s)	239
MseI	TTAA	1 cut(s)	265
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	3 cut(s)	60, 169, 238
NlaIV	GGNNCC	1 cut(s)	178
NspI	RCATGY	1 cut(s)	238
PciI	ACATGT	1 cut(s)	234
PciSI	GCTCTTC	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	137
PscI	ACATGT	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	60
SapI	GCTCTTC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	265
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	4 cut(s)	51, 214, 249, 256
SfaNI	GCATC	1 cut(s)	16
Sse9I	AATT	1 cut(s)	262
SsiI	CCGC	1 cut(s)	206
TaiI	ACGT	1 cut(s)	51
TasI	AATT	1 cut(s)	262
Tru1I	TTAA	1 cut(s)	265
Tru9I	TTAA	1 cut(s)	265
TseI	GCWGC	1 cut(s)	135
XceI	RCATGY	1 cut(s)	238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.