FvH4_1g28130

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013134
Physical Location & Seq
Reverse (-)
19995521 .. 19999352
3832 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28130.t1

Sequence Viewer

Length: 885 bp
ATGGTGGCGCAGCTCCTGGTGGGATGCATACCCATCAGCGGCGCCTTCAGAGGAGGAGGAGGAGGAGGAGGCAGAGCTCGGTGGATTACGGCGGCTTCATCCTCAGCAAGCGGCGGCCACCAGAAGCAGAATCACTACGGTGTTCTGGGGCTTACCCGCTACGCCACCTCCGCCGATATCAAGAGGGCTTATCGCCTTCTCGCTCGTAAGTTTCATCCTGATGTTTGCAAGGATTCTCAAGCTGAACAAGTATTCAAGAGCATCCGTCAAGCATACGAGATACTATCTAATGAAGCAACCAGGATTCAGTATGACCAAGAACTTAAATATCAGAAACAGACAGGTCGACAATGTACAGCACAGCGGAACTACAGTCCTGAATTCGAAGATGGTGTAAGGATCTATAAGTGGGATCAGGTGAGGCAGAACATGAAACGTGAGAGACAGTGGGAACATTATAATGTAAATGAAACATCAAATGGTAAATCAGATGAAGCATCTGAAAGAGAGCCATCCCAAGAGAGAGGTTCCTTCGGCGAAGTTCTTAGATCTGCCTTTGTGTCTCTGTTTTTATTGCATACTGTTGGATCCCTTTTGTCTCTCAGTTTTAGTAGTCTGATGGCCTTGTTGGACAGGAAGTTGGATGCTGGATATAAGATTGGTTATGTCATTGCATGGATTTTGGGTGGGAGGGGTGGTATCTTGCTCAGTCTGTGTTTATCTTTTGCTAGTTGGATTTGTGGAAAGACCAGCAGCAGTATGGTTTCTCTAGTGGTGGTAGCCTTGTGGGTTGGCTTGAATCTTGCAAGATTTGCACCACTTCCTCAAGGTGCTCTTCTTACACTTCTCTACATGTCCATCAAGCTACAAGGTGATAGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

295

Amino Acids

32.63

Weight (kDa)

9.57

Isoelectric Point (pI)

41.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 44 - 105 1.6e-20 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013134)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18140
fragaria_vesca FvH4_1g28130 FvH4_1g28130
malus_domestica MD12G1003800.v1.1
prunus_persica Prupe.7G004300_v2.0.a1
pyrus_communis pycom12g00320
rosa_chinensis RchiOBHm_Chr3g0497071
rosa_laevigata RLG00000022482
rosa_multiflora Rmu_co8330937.1_g000001 Rmu_sc0011396.1_g000005 Rmu_ssc0000003.1_g000038
rosa_roxburghii Rroxscaffold_6G00388410
rosa_rugosa Rorug03G0289400
rosa_samantha Rh3AG333900 Rh3BG371000 Rh3CG367900 Rh3DG368900
rosa_wichuraiana Rw3G029310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 459
AccB1I GGYRCC 1 cut(s) 41
AccI GTMKAC 1 cut(s) 346
AciI CCGC 7 cut(s) 39, 92, 111, 114, 157, 171, 364
AclWI GGATC 4 cut(s) 407, 420, 582, 595
AcoI YGGCCR 1 cut(s) 115
AcsI RAATTY 1 cut(s) 380
AcuI CTGAAG 1 cut(s) 31
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 1 cut(s) 355
AfiI CCNNNNNNNGG 1 cut(s) 38
AflIII ACRYGT 1 cut(s) 852
AgsI TTSAA 2 cut(s) 256, 799
AjnI CCWGG 2 cut(s) 15, 299
AleI CACNNNNGTG 1 cut(s) 138
AluBI AGCT 4 cut(s) 13, 77, 242, 865
AluI AGCT 4 cut(s) 13, 77, 242, 865
Alw21I GWGCWC 2 cut(s) 79, 835
Alw26I GTCTC 3 cut(s) 436, 567, 603
AlwI GGATC 4 cut(s) 407, 420, 582, 595
AlwNI CAGNNNCTG 1 cut(s) 16
AoxI GGCC 2 cut(s) 115, 621
ApeKI GCWGC 2 cut(s) 10, 753
ApoI RAATTY 1 cut(s) 380
AspLEI GCGC 2 cut(s) 10, 44
AsuHPI GGTGA 2 cut(s) 430, 884
AsuII TTCGAA 1 cut(s) 384
BamHI GGATCC 1 cut(s) 587
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 79
Bbv12I GWGCWC 2 cut(s) 79, 835
BbvCI CCTCAGC 1 cut(s) 103
BbvI GCAGC 2 cut(s) 22, 765
BccI CCATC 5 cut(s) 41, 383, 520, 613, 866
BceAI ACGGC 1 cut(s) 105
BciT130I CCWGG 2 cut(s) 17, 301
BcoDI GTCTC 3 cut(s) 436, 567, 603
BfaI CTAG 2 cut(s) 729, 770
BfmI CTRYAG 1 cut(s) 370
BfoI RGCGCY 1 cut(s) 45
BglII AGATCT 1 cut(s) 548
BisI GCNGC 6 cut(s) 11, 40, 93, 112, 115, 754
BlsI GCNGC 6 cut(s) 12, 41, 94, 113, 116, 755
Bme1390I CCNGG 2 cut(s) 17, 301
BmiI GGNNCC 3 cut(s) 43, 529, 589
BmrFI CCNGG 2 cut(s) 17, 301
BmsI GCATC 4 cut(s) 14, 270, 506, 634
Bpu10I CCTNAGC 1 cut(s) 103
Bpu14I TTCGAA 1 cut(s) 384
BpuEI CTTGAG 2 cut(s) 222, 810
BsaHI GRCGYC 1 cut(s) 42
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 682, 712
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse3DI GCAATG 1 cut(s) 669
BseBI CCWGG 2 cut(s) 17, 301
BseGI GGATG 6 cut(s) 29, 98, 214, 261, 512, 649
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMI GCAATG 1 cut(s) 669
BseMII CTCAG 3 cut(s) 117, 616, 721
BseRI GAGGAG 6 cut(s) 66, 69, 72, 75, 78, 81
BseXI GCAGC 2 cut(s) 22, 765
BshFI GGCC 2 cut(s) 117, 623
BshNI GGYRCC 1 cut(s) 41
BsiHKAI GWGCWC 2 cut(s) 79, 835
BslI CCNNNNNNNGG 1 cut(s) 38
BsmAI GTCTC 3 cut(s) 436, 567, 603
BsnI GGCC 2 cut(s) 117, 623
Bsp119I TTCGAA 1 cut(s) 384
Bsp1286I GDGCHC 2 cut(s) 79, 835
Bsp1407I TGTACA 1 cut(s) 353
Bsp143I GATC 4 cut(s) 399, 412, 548, 587
BspACI CCGC 7 cut(s) 39, 92, 111, 114, 157, 171, 364
BspANI GGCC 2 cut(s) 117, 623
BspCNI CTCAG 3 cut(s) 116, 615, 720
BspLI GGNNCC 3 cut(s) 43, 529, 589
BspPI GGATC 4 cut(s) 407, 420, 582, 595
BspQI GCTCTTC 1 cut(s) 840
BspT104I TTCGAA 1 cut(s) 384
BspT107I GGYRCC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 669
BsrGI TGTACA 1 cut(s) 353
BssMI GATC 4 cut(s) 399, 412, 548, 587
BssNI GRCGYC 1 cut(s) 42
Bst2UI CCWGG 2 cut(s) 17, 301
Bst4CI ACNGT 4 cut(s) 140, 374, 447, 583
Bst6I CTCTTC 1 cut(s) 840
BstACI GRCGYC 1 cut(s) 42
BstAPI GCANNNNNTGC 1 cut(s) 812
BstAUI TGTACA 1 cut(s) 353
BstBI TTCGAA 1 cut(s) 384
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 4 cut(s) 103, 545, 602, 707
BstF5I GGATG 6 cut(s) 29, 98, 214, 261, 512, 649
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 2 cut(s) 10, 44
BstKTI GATC 4 cut(s) 402, 415, 551, 590
BstMAI GTCTC 3 cut(s) 436, 567, 603
BstMBI GATC 4 cut(s) 399, 412, 548, 587
BstMWI GCNNNNNNNGC 2 cut(s) 170, 812
BstNI CCWGG 2 cut(s) 17, 301
BstNSI RCATGY 1 cut(s) 856
BstSCI CCNGG 2 cut(s) 15, 299
BstSFI CTRYAG 1 cut(s) 370
BstV1I GCAGC 2 cut(s) 22, 765
BstX2I RGATCY 3 cut(s) 399, 548, 587
BstYI RGATCY 3 cut(s) 399, 548, 587
BsuRI GGCC 2 cut(s) 117, 623
BtsCI GGATG 6 cut(s) 29, 98, 214, 261, 512, 649
BtsIMutI CAGTG 1 cut(s) 452
Cac8I GCNNGC 1 cut(s) 109
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 2 cut(s) 10, 44
Csp6I GTAC 1 cut(s) 354
CviAII CATG 3 cut(s) 430, 675, 853
CviQI GTAC 1 cut(s) 354
DdeI CTNAG 4 cut(s) 103, 545, 602, 707
DinI GGCGCC 1 cut(s) 43
DpnI GATC 4 cut(s) 401, 414, 550, 589
DpnII GATC 4 cut(s) 399, 412, 548, 587
EaeI YGGCCR 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 840
EarI CTCTTC 1 cut(s) 840
EciI GGCGGA 1 cut(s) 160
Ecl136II GAGCTC 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 79
Eco32I GATATC 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 77
EcoRI GAATTC 1 cut(s) 380
EcoRII CCWGG 2 cut(s) 15, 299
EcoRV GATATC 1 cut(s) 178
EcoT22I ATGCAT 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 79
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
FaeI CATG 3 cut(s) 433, 678, 856
FalI AAGNNNNNCTT 2 cut(s) 819, 851
FatI CATG 3 cut(s) 429, 674, 852
FauI CCCGC 1 cut(s) 164
FblI GTMKAC 1 cut(s) 346
Fnu4HI GCNGC 6 cut(s) 11, 40, 93, 112, 115, 754
FokI GGATG 6 cut(s) 36, 85, 201, 248, 499, 656
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 6 cut(s) 11, 40, 93, 112, 115, 754
FspBI CTAG 2 cut(s) 729, 770
GlaI GCGC 2 cut(s) 9, 43
GluI GCNGC 6 cut(s) 11, 40, 93, 112, 115, 754
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 2 cut(s) 117, 623
HhaI GCGC 2 cut(s) 10, 44
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 3 cut(s) 433, 678, 856
Hin6I GCGC 2 cut(s) 8, 42
HinP1I GCGC 2 cut(s) 8, 42
HincII GTYRAC 1 cut(s) 347
HindII GTYRAC 1 cut(s) 347
HinfI GANTC 4 cut(s) 130, 233, 304, 799
HphI GGTGA 2 cut(s) 430, 884
Hpy166II GTNNAC 1 cut(s) 347
Hpy188I TCNGA 5 cut(s) 50, 333, 490, 502, 618
Hpy188III TCNNGA 4 cut(s) 181, 218, 256, 377
Hpy8I GTNNAC 1 cut(s) 347
HpyAV CCTTC 3 cut(s) 55, 206, 541
HpyCH4III ACNGT 4 cut(s) 140, 374, 447, 583
HpyCH4IV ACGT 1 cut(s) 436
HpyCH4V TGCA 6 cut(s) 27, 228, 577, 674, 806, 815
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 812
HpyF3I CTNAG 4 cut(s) 103, 545, 602, 707
HpySE526I ACGT 1 cut(s) 436
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 3 cut(s) 433, 678, 856
HspAI GCGC 2 cut(s) 8, 42
KasI GGCGCC 1 cut(s) 41
Kzo9I GATC 4 cut(s) 399, 412, 548, 587
LguI GCTCTTC 1 cut(s) 840
LmnI GCTCC 1 cut(s) 18
Lsp1109I GCAGC 2 cut(s) 22, 765
LweI GCATC 4 cut(s) 14, 270, 506, 634
MaeI CTAG 2 cut(s) 729, 770
MaeII ACGT 1 cut(s) 436
MalI GATC 4 cut(s) 401, 414, 550, 589
MboI GATC 4 cut(s) 399, 412, 548, 587
MboII GAAGA 2 cut(s) 398, 827
MflI RGATCY 3 cut(s) 399, 548, 587
MhlI GDGCHC 2 cut(s) 79, 835
MluCI AATT 1 cut(s) 380
Mly113I GGCGCC 1 cut(s) 42
MmeI TCCRAC 4 cut(s) 565, 609, 621, 713
Mph1103I ATGCAT 1 cut(s) 29
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 3 cut(s) 138, 219, 459
MspA1I CMGCKG 2 cut(s) 39, 364
MspR9I CCNGG 2 cut(s) 17, 301
MvaI CCWGG 2 cut(s) 17, 301
MwoI GCNNNNNNNGC 2 cut(s) 170, 812
NarI GGCGCC 1 cut(s) 42
NdeII GATC 4 cut(s) 399, 412, 548, 587
NlaIII CATG 3 cut(s) 433, 678, 856
NlaIV GGNNCC 3 cut(s) 43, 529, 589
NsiI ATGCAT 1 cut(s) 29
NspI RCATGY 1 cut(s) 856
NspV TTCGAA 1 cut(s) 384
OliI CACNNNNGTG 1 cut(s) 138
PciI ACATGT 1 cut(s) 852
PciSI GCTCTTC 1 cut(s) 840
PfeI GAWTC 4 cut(s) 130, 233, 304, 799
PkrI GCNGC 6 cut(s) 12, 41, 94, 113, 116, 755
PluTI GGCGCC 1 cut(s) 45
PscI ACATGT 1 cut(s) 852
PsiI TTATAA 1 cut(s) 459
Psp124BI GAGCTC 1 cut(s) 79
Psp6I CCWGG 2 cut(s) 15, 299
PspGI CCWGG 2 cut(s) 15, 299
PspN4I GGNNCC 3 cut(s) 43, 529, 589
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 3 cut(s) 399, 548, 587
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
RseI CAYNNNNRTG 3 cut(s) 138, 219, 459
SacI GAGCTC 1 cut(s) 79
SalI GTCGAC 1 cut(s) 345
SapI GCTCTTC 1 cut(s) 840
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 6 cut(s) 11, 40, 93, 112, 115, 754
Sau3AI GATC 4 cut(s) 399, 412, 548, 587
ScrFI CCNGG 2 cut(s) 17, 301
SduI GDGCHC 2 cut(s) 79, 835
SfaNI GCATC 4 cut(s) 14, 270, 506, 634
SfcI CTRYAG 1 cut(s) 370
SfoI GGCGCC 1 cut(s) 43
SfuI TTCGAA 1 cut(s) 384
SmiMI CAYNNNNRTG 3 cut(s) 138, 219, 459
SmlI CTYRAG 2 cut(s) 237, 825
SmoI CTYRAG 2 cut(s) 237, 825
Sse9I AATT 1 cut(s) 380
SsiI CCGC 7 cut(s) 39, 92, 111, 114, 157, 171, 364
SspDI GGCGCC 1 cut(s) 41
SspMI CTAG 2 cut(s) 729, 770
SstI GAGCTC 1 cut(s) 79
StyD4I CCNGG 2 cut(s) 15, 299
TaaI ACNGT 4 cut(s) 140, 374, 447, 583
TaiI ACGT 1 cut(s) 439
TaqI TCGA 2 cut(s) 346, 384
TasI AATT 1 cut(s) 380
TatI WGTACW 1 cut(s) 353
TauI GCSGC 4 cut(s) 42, 95, 114, 117
TfiI GAWTC 4 cut(s) 130, 233, 304, 799
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 1 cut(s) 452
TseI GCWGC 2 cut(s) 10, 753
TspDTI ATGAA 6 cut(s) 87, 203, 306, 446, 483, 507
TspGWI ACGGA 1 cut(s) 254
TspRI CASTG 1 cut(s) 452
XapI RAATTY 1 cut(s) 380
XceI RCATGY 1 cut(s) 856
XcmI CCANNNNNNNNNTGG 1 cut(s) 757
XmiI GTMKAC 1 cut(s) 346
XspI CTAG 2 cut(s) 729, 770
Zsp2I ATGCAT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.