Rroxscaffold_6G00388410

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013134
Physical Location & Seq
Reverse (-)
1350251 .. 1352818
2568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00388410.1

Sequence Viewer

Length: 810 bp
ATGGTAGGGCAGGTCCTGGTGGGATGCATACCCATCAGTGGCGCCTTGAGTTTCAGTAATTCGATACGACCATGTCCCATAGGAGGAGGAGGAGGAGGAGGAGGAGGCAGAGCTCGGCGGATTACGGCATCATCATCAGTAAACGGCGGCCACCAGAATCACTACGGTGTTCTGGGCCTTACTCGCTATGCCACCTCCGCCGATATCAAGAGGGCTTATCGCCTTCTCGCTCGCAAGTATCATCCTGATGTTAGCAAGGATTCTCAAGCTGGACAAGTATTCAAGAGCATTCGTCAAGCATATGAGATACTATCTAATGAAGCAACCAGGATTGAGTATGACCAAGAACTTAAATTTCAGAAAGAGACTGGTAGACAATATAGAGGAAAACGGAACTACAGTCCTGAATTCGAAGATGGTGTAAGGATGTATAAGTGGGCTGAGGTGAGGCAGAAGATTAAACGTGAGAGACAGTGGGAACATTATAATGTAAATGGAGAGACATCATATGGTAAACCAGATGAAGCATCTGAAGGAGAGCCATCCCAGGAGAGAGGTTCCTTCAGCGAAGTGCTTAGATCTGCCTTTGTATCTCTGTTTTTATTGCAGACGTTTGGATCCCGTTTGTCTCTCACTTTTAGTAGTCTGATGGCCTTGTTTGATAGGAAGTTGGATGCTGGATATAAGATTGGTTACGTCATTGCATGGATCTTGGGTGGGAGGGGGGTATCTTGCTCACTCTGTGTTTATCTTTTGCAAGTTGGGTTTGTGGAAAAACCAGCAGCAGTATGGTTGCTCTGGTGGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

269

Amino Acids

30.15

Weight (kDa)

9.51

Isoelectric Point (pI)

42.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 53 - 114 2.4e-20 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013134)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18140
fragaria_vesca FvH4_1g28130 FvH4_1g28130
malus_domestica MD12G1003800.v1.1
prunus_persica Prupe.7G004300_v2.0.a1
pyrus_communis pycom12g00320
rosa_chinensis RchiOBHm_Chr3g0497071
rosa_laevigata RLG00000022482
rosa_multiflora Rmu_co8330937.1_g000001 Rmu_sc0011396.1_g000005 Rmu_ssc0000003.1_g000038
rosa_roxburghii Rroxscaffold_6G00388410
rosa_rugosa Rorug03G0289400
rosa_samantha Rh3AG333900 Rh3BG371000 Rh3CG367900 Rh3DG368900
rosa_wichuraiana Rw3G029310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 486
AccB1I GGYRCC 1 cut(s) 41
AccI GTMKAC 1 cut(s) 373
AciI CCGC 3 cut(s) 118, 147, 198
AclWI GGATC 3 cut(s) 612, 625, 716
AcoI YGGCCR 1 cut(s) 148
AcsI RAATTY 2 cut(s) 353, 407
AcuI CTGAAG 2 cut(s) 547, 552
AcyI GRCGYC 1 cut(s) 42
AdeI CACNNNGTG 1 cut(s) 743
AfiI CCNNNNNNNGG 2 cut(s) 38, 83
AgsI TTSAA 1 cut(s) 283
AjnI CCWGG 3 cut(s) 15, 326, 546
AleI CACNNNNGTG 1 cut(s) 165
AluBI AGCT 2 cut(s) 113, 269
AluI AGCT 2 cut(s) 113, 269
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 4 cut(s) 359, 463, 494, 633
AlwI GGATC 3 cut(s) 612, 625, 716
AlwNI CAGNNNCTG 1 cut(s) 16
AoxI GGCC 3 cut(s) 148, 175, 651
ApeKI GCWGC 1 cut(s) 782
ApoI RAATTY 2 cut(s) 353, 407
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 2 cut(s) 13, 175
AsuHPI GGTGA 1 cut(s) 457
AsuII TTCGAA 1 cut(s) 411
AvaII GGWCC 1 cut(s) 13
BamHI GGATCC 1 cut(s) 617
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 115
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 1 cut(s) 794
BccI CCATC 4 cut(s) 41, 410, 550, 643
BceAI ACGGC 2 cut(s) 141, 160
BciT130I CCWGG 3 cut(s) 17, 328, 548
BcoDI GTCTC 4 cut(s) 359, 463, 494, 633
BfmI CTRYAG 1 cut(s) 397
BfoI RGCGCY 1 cut(s) 45
BglII AGATCT 1 cut(s) 578
BisI GCNGC 2 cut(s) 148, 783
BlsI GCNGC 2 cut(s) 149, 784
Bme1390I CCNGG 3 cut(s) 17, 328, 548
Bme18I GGWCC 1 cut(s) 13
BmgT120I GGNCC 2 cut(s) 13, 175
BmiI GGNNCC 3 cut(s) 43, 559, 619
BmrFI CCNGG 3 cut(s) 17, 328, 548
BmsI GCATC 4 cut(s) 14, 137, 536, 664
Bpu10I CCTNAGC 1 cut(s) 441
Bpu14I TTCGAA 1 cut(s) 411
BpuEI CTTGAG 2 cut(s) 67, 249
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 546
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 83
Bse1I ACTGG 1 cut(s) 373
Bse3DI GCAATG 1 cut(s) 699
BseBI CCWGG 3 cut(s) 17, 328, 548
BseDI CCNNGG 1 cut(s) 546
BseGI GGATG 5 cut(s) 29, 241, 432, 542, 679
BseLI CCNNNNNNNGG 2 cut(s) 38, 83
BseMI GCAATG 1 cut(s) 699
BseMII CTCAG 1 cut(s) 432
BseNI ACTGG 1 cut(s) 373
BseRI GAGGAG 7 cut(s) 99, 102, 105, 108, 111, 114, 117
BseXI GCAGC 1 cut(s) 794
BshFI GGCC 3 cut(s) 150, 177, 653
BshNI GGYRCC 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 115
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 2 cut(s) 38, 83
BsmAI GTCTC 4 cut(s) 359, 463, 494, 633
BsmFI GGGAC 1 cut(s) 60
BsmI GAATGC 1 cut(s) 288
BsnI GGCC 3 cut(s) 150, 177, 653
Bsp119I TTCGAA 1 cut(s) 411
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 3 cut(s) 578, 617, 708
BspACI CCGC 3 cut(s) 118, 147, 198
BspANI GGCC 3 cut(s) 150, 177, 653
BspCNI CTCAG 1 cut(s) 433
BspLI GGNNCC 3 cut(s) 43, 559, 619
BspPI GGATC 3 cut(s) 612, 625, 716
BspT104I TTCGAA 1 cut(s) 411
BspT107I GGYRCC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 699
BsrI ACTGG 1 cut(s) 373
BssECI CCNNGG 1 cut(s) 546
BssMI GATC 3 cut(s) 578, 617, 708
BssNI GRCGYC 1 cut(s) 42
Bst2UI CCWGG 3 cut(s) 17, 328, 548
Bst4CI ACNGT 3 cut(s) 167, 401, 474
BstACI GRCGYC 1 cut(s) 42
BstBI TTCGAA 1 cut(s) 411
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 2 cut(s) 441, 575
BstF5I GGATG 5 cut(s) 29, 241, 432, 542, 679
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 3 cut(s) 581, 620, 711
BstMAI GTCTC 4 cut(s) 359, 463, 494, 633
BstMBI GATC 3 cut(s) 578, 617, 708
BstMWI GCNNNNNNNGC 2 cut(s) 183, 197
BstNI CCWGG 3 cut(s) 17, 328, 548
BstSCI CCNGG 3 cut(s) 15, 326, 546
BstSFI CTRYAG 1 cut(s) 397
BstV1I GCAGC 1 cut(s) 794
BstX2I RGATCY 3 cut(s) 578, 617, 708
BstYI RGATCY 3 cut(s) 578, 617, 708
BsuRI GGCC 3 cut(s) 150, 177, 653
BtsCI GGATG 5 cut(s) 29, 241, 432, 542, 679
BtsIMutI CAGTG 2 cut(s) 43, 479
Cac8I GCNNGC 1 cut(s) 232
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 1 cut(s) 44
Cfr13I GGNCC 2 cut(s) 13, 175
CviAII CATG 2 cut(s) 72, 705
CviJI RGCY 8 cut(s) 113, 150, 177, 215, 269, 440, 541, 653
CviKI_1 RGCY 8 cut(s) 113, 150, 177, 215, 269, 440, 541, 653
DdeI CTNAG 2 cut(s) 441, 575
DinI GGCGCC 1 cut(s) 43
DpnI GATC 3 cut(s) 580, 619, 710
DpnII GATC 3 cut(s) 578, 617, 708
DraIII CACNNNGTG 1 cut(s) 743
EaeI YGGCCR 1 cut(s) 148
EciI GGCGGA 2 cut(s) 133, 187
Ecl136II GAGCTC 1 cut(s) 113
Eco24I GRGCYC 1 cut(s) 115
Eco32I GATATC 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 13
Eco53kI GAGCTC 1 cut(s) 113
Eco57I CTGAAG 2 cut(s) 547, 552
EcoICRI GAGCTC 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 13
EcoRI GAATTC 1 cut(s) 407
EcoRII CCWGG 3 cut(s) 15, 326, 546
EcoRV GATATC 1 cut(s) 205
EcoT22I ATGCAT 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 115
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
FaeI CATG 2 cut(s) 75, 708
FaqI GGGAC 1 cut(s) 60
FatI CATG 2 cut(s) 71, 704
FauNDI CATATG 2 cut(s) 301, 508
FblI GTMKAC 1 cut(s) 373
Fnu4HI GCNGC 2 cut(s) 148, 783
FokI GGATG 5 cut(s) 36, 228, 439, 529, 686
FriOI GRGCYC 1 cut(s) 115
Fsp4HI GCNGC 2 cut(s) 148, 783
GlaI GCGC 1 cut(s) 43
GluI GCNGC 2 cut(s) 148, 783
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 3 cut(s) 150, 177, 653
HhaI GCGC 1 cut(s) 44
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 2 cut(s) 75, 708
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HinfI GANTC 2 cut(s) 157, 260
HphI GGTGA 1 cut(s) 457
Hpy166II GTNNAC 3 cut(s) 142, 374, 515
Hpy188I TCNGA 3 cut(s) 360, 532, 648
Hpy188III TCNNGA 4 cut(s) 208, 245, 283, 404
Hpy8I GTNNAC 3 cut(s) 142, 374, 515
HpyAV CCTTC 3 cut(s) 233, 527, 571
HpyCH4III ACNGT 3 cut(s) 167, 401, 474
HpyCH4IV ACGT 3 cut(s) 463, 611, 696
HpyCH4V TGCA 4 cut(s) 27, 607, 704, 757
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 197
HpyF3I CTNAG 2 cut(s) 441, 575
HpySE526I ACGT 3 cut(s) 463, 611, 696
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 2 cut(s) 75, 708
HspAI GCGC 1 cut(s) 42
KasI GGCGCC 1 cut(s) 41
Kzo9I GATC 3 cut(s) 578, 617, 708
Lsp1109I GCAGC 1 cut(s) 794
LweI GCATC 4 cut(s) 14, 137, 536, 664
MaeII ACGT 3 cut(s) 463, 611, 696
MaeIII GTNAC 1 cut(s) 692
MalI GATC 3 cut(s) 580, 619, 710
MboI GATC 3 cut(s) 578, 617, 708
MboII GAAGA 2 cut(s) 425, 466
MflI RGATCY 3 cut(s) 578, 617, 708
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 3 cut(s) 58, 353, 407
Mly113I GGCGCC 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 651
Mph1103I ATGCAT 1 cut(s) 29
MseI TTAA 2 cut(s) 351, 459
MslI CAYNNNNRTG 3 cut(s) 165, 246, 486
MspR9I CCNGG 3 cut(s) 17, 328, 548
Mva1269I GAATGC 1 cut(s) 288
MvaI CCWGG 3 cut(s) 17, 328, 548
MwoI GCNNNNNNNGC 2 cut(s) 183, 197
NarI GGCGCC 1 cut(s) 42
NdeI CATATG 2 cut(s) 301, 508
NdeII GATC 3 cut(s) 578, 617, 708
NlaIII CATG 2 cut(s) 75, 708
NlaIV GGNNCC 3 cut(s) 43, 559, 619
NmeAIII GCCGAG 1 cut(s) 94
NsiI ATGCAT 1 cut(s) 29
NspV TTCGAA 1 cut(s) 411
OliI CACNNNNGTG 1 cut(s) 165
PctI GAATGC 1 cut(s) 288
PfeI GAWTC 2 cut(s) 157, 260
PflFI GACNNNGTC 1 cut(s) 72
PkrI GCNGC 2 cut(s) 149, 784
PluTI GGCGCC 1 cut(s) 45
PpuMI RGGWCCY 1 cut(s) 13
PsiI TTATAA 1 cut(s) 486
Psp124BI GAGCTC 1 cut(s) 115
Psp5II RGGWCCY 1 cut(s) 13
Psp6I CCWGG 3 cut(s) 15, 326, 546
PspGI CCWGG 3 cut(s) 15, 326, 546
PspN4I GGNNCC 3 cut(s) 43, 559, 619
PspPI GGNCC 2 cut(s) 13, 175
PspPPI RGGWCCY 1 cut(s) 13
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 3 cut(s) 578, 617, 708
PsyI GACNNNGTC 1 cut(s) 72
RseI CAYNNNNRTG 3 cut(s) 165, 246, 486
SacI GAGCTC 1 cut(s) 115
SaqAI TTAA 2 cut(s) 351, 459
SatI GCNGC 2 cut(s) 148, 783
Sau3AI GATC 3 cut(s) 578, 617, 708
Sau96I GGNCC 2 cut(s) 13, 175
ScrFI CCNGG 3 cut(s) 17, 328, 548
SduI GDGCHC 1 cut(s) 115
SetI ASST 9 cut(s) 15, 115, 197, 271, 447, 466, 559, 614, 699
SfaNI GCATC 4 cut(s) 14, 137, 536, 664
SfcI CTRYAG 1 cut(s) 397
SfoI GGCGCC 1 cut(s) 43
SfuI TTCGAA 1 cut(s) 411
SinI GGWCC 1 cut(s) 13
SmiMI CAYNNNNRTG 3 cut(s) 165, 246, 486
SmlI CTYRAG 2 cut(s) 46, 264
SmoI CTYRAG 2 cut(s) 46, 264
Sse9I AATT 3 cut(s) 58, 353, 407
SsiI CCGC 3 cut(s) 118, 147, 198
SspDI GGCGCC 1 cut(s) 41
SstI GAGCTC 1 cut(s) 115
StyD4I CCNGG 3 cut(s) 15, 326, 546
TaaI ACNGT 3 cut(s) 167, 401, 474
TaiI ACGT 3 cut(s) 466, 614, 699
TaqI TCGA 2 cut(s) 62, 411
TasI AATT 3 cut(s) 58, 353, 407
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 2 cut(s) 157, 260
Tru1I TTAA 2 cut(s) 351, 459
Tru9I TTAA 2 cut(s) 351, 459
TscAI CASTG 2 cut(s) 43, 479
TseI GCWGC 1 cut(s) 782
TspDTI ATGAA 2 cut(s) 333, 537
TspGWI ACGGA 1 cut(s) 406
TspRI CASTG 2 cut(s) 43, 479
Tth111I GACNNNGTC 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 13
XapI RAATTY 2 cut(s) 353, 407
XcmI CCANNNNNNNNNTGG 1 cut(s) 786
XmiI GTMKAC 1 cut(s) 373
Zsp2I ATGCAT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.