Rh3DG368900

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0013134
Physical Location & Seq
Forward (+)
46601677 .. 46604259
2583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG368900.1

Sequence Viewer

Length: 924 bp
ATGGTAGGGCAGGTCCTGGTGGGATGCATACCCATCAGTGGCGCCTTGAGTTTCAGTAATTCGATACGACCATGTCCCATAGGAAGAGGAAGAGGAAGAGGAAGAGGAGGAGGCAGAGCTCGGCGGATTACGGCATCATCATCATCAGTAAACGGCGGCCACCAGAATCACTACGGTGTTCTGGGCCTTACACGCTATGCCACCTCCGCCGATATCAAGAGGGCTTATCGCCTTCTCGCTCGCAAGTATCATCCTGATGTTAGCAAGGATTCTCAAGCTGGACAAGTATTCAAGAGCATCCGTCAAGCATATGAGATACTATCTAATGAAGCAACCAGGATTGAGTATGACCAAGAACTCAAATTTCAGAAAGAGACTGGTAGACAATATAGAGGAAAACGGAACTACAGTCCTGAATTCGAAGATGGTGTAAGGATCTATAAGTGGGCTGAGGTGAGGCAGAAGATTAAACGTGAGAGACGGTGGGAACATTATAATGTAAATGGAGAGACATCATATGGTAAACCAGATGAAGCATCTGAAGGAGAGCCATCCCAGGAGAGAGGTTCCTTCAGCGAAGTGCTTAGATCTGCCTTTGTATCTTTGTTTTTATTGCAGATGTTTGGATCCCGTTTGTCTCTCACTTTTAGTAGTTTGATGGCCTTGTTTGATAGGAAGTTGGATGCTGGATATAAGATTGGTTACGTCATTGCATGGATCTTGGGTGGGAAGGGTGGTATCTTGCTCACTCTGTGTTTATCTTTTGCAAGTTGGGTTTGTGGAAAAACCAGCAGCAGTATGGTTGCTCTGGTGGTGGTAGCCATGTGGGTTGGCTCCAATCTTGCAAGATTTGCACCACTTCCGCAAGGTGCTCTTCTTACACTCCTCTACATGTCTATCAAGCTACAAGGTGATTTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

307

Amino Acids

34.13

Weight (kDa)

9.9

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 56 - 117 3e-20 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013134)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18140
fragaria_vesca FvH4_1g28130 FvH4_1g28130
malus_domestica MD12G1003800.v1.1
prunus_persica Prupe.7G004300_v2.0.a1
pyrus_communis pycom12g00320
rosa_chinensis RchiOBHm_Chr3g0497071
rosa_laevigata RLG00000022482
rosa_multiflora Rmu_co8330937.1_g000001 Rmu_sc0011396.1_g000005 Rmu_ssc0000003.1_g000038
rosa_roxburghii Rroxscaffold_6G00388410
rosa_rugosa Rorug03G0289400
rosa_samantha Rh3AG333900 Rh3BG371000 Rh3CG367900 Rh3DG368900
rosa_wichuraiana Rw3G029310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 495
AccB1I GGYRCC 1 cut(s) 41
AccI GTMKAC 1 cut(s) 382
AciI CCGC 4 cut(s) 124, 156, 207, 863
AclWI GGATC 4 cut(s) 443, 621, 634, 725
AcoI YGGCCR 1 cut(s) 157
AcsI RAATTY 2 cut(s) 362, 416
AcuI CTGAAG 2 cut(s) 556, 561
AcyI GRCGYC 1 cut(s) 42
AdeI CACNNNGTG 1 cut(s) 753
AfiI CCNNNNNNNGG 1 cut(s) 38
AflIII ACRYGT 1 cut(s) 891
AgsI TTSAA 2 cut(s) 292, 919
AjnI CCWGG 3 cut(s) 15, 335, 555
AleI CACNNNNGTG 1 cut(s) 174
AluBI AGCT 3 cut(s) 119, 278, 904
AluI AGCT 3 cut(s) 119, 278, 904
Alw21I GWGCWC 2 cut(s) 121, 874
Alw26I GTCTC 4 cut(s) 368, 472, 503, 642
AlwI GGATC 4 cut(s) 443, 621, 634, 725
AlwNI CAGNNNCTG 1 cut(s) 16
AoxI GGCC 3 cut(s) 157, 184, 660
ApeKI GCWGC 1 cut(s) 792
ApoI RAATTY 2 cut(s) 362, 416
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 2 cut(s) 13, 184
AsuHPI GGTGA 2 cut(s) 466, 923
AsuII TTCGAA 1 cut(s) 420
AvaII GGWCC 1 cut(s) 13
BamHI GGATCC 1 cut(s) 626
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 121
Bbv12I GWGCWC 2 cut(s) 121, 874
BbvCI CCTCAGC 1 cut(s) 450
BbvI GCAGC 1 cut(s) 804
BccI CCATC 4 cut(s) 41, 419, 559, 652
BceAI ACGGC 2 cut(s) 147, 169
BciT130I CCWGG 3 cut(s) 17, 337, 557
BcoDI GTCTC 4 cut(s) 368, 472, 503, 642
BfmI CTRYAG 1 cut(s) 406
BfoI RGCGCY 1 cut(s) 45
BglII AGATCT 1 cut(s) 587
BisI GCNGC 2 cut(s) 157, 793
BlsI GCNGC 2 cut(s) 158, 794
Bme1390I CCNGG 3 cut(s) 17, 337, 557
Bme18I GGWCC 1 cut(s) 13
BmgT120I GGNCC 2 cut(s) 13, 184
BmiI GGNNCC 4 cut(s) 43, 568, 628, 835
BmrFI CCNGG 3 cut(s) 17, 337, 557
BmsI GCATC 5 cut(s) 14, 143, 306, 545, 673
Bpu10I CCTNAGC 1 cut(s) 450
Bpu14I TTCGAA 1 cut(s) 420
BpuEI CTTGAG 2 cut(s) 67, 258
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 555
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse1I ACTGG 1 cut(s) 382
Bse3DI GCAATG 1 cut(s) 708
BseBI CCWGG 3 cut(s) 17, 337, 557
BseDI CCNNGG 1 cut(s) 555
BseGI GGATG 5 cut(s) 29, 250, 297, 551, 688
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMI GCAATG 1 cut(s) 708
BseMII CTCAG 1 cut(s) 441
BseNI ACTGG 1 cut(s) 382
BseRI GAGGAG 3 cut(s) 120, 123, 875
BseXI GCAGC 1 cut(s) 804
BshFI GGCC 3 cut(s) 159, 186, 662
BshNI GGYRCC 1 cut(s) 41
BsiHKAI GWGCWC 2 cut(s) 121, 874
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 38
BsmAI GTCTC 4 cut(s) 368, 472, 503, 642
BsmBI CGTCTC 1 cut(s) 472
BsmFI GGGAC 1 cut(s) 60
BsnI GGCC 3 cut(s) 159, 186, 662
Bsp119I TTCGAA 1 cut(s) 420
Bsp1286I GDGCHC 2 cut(s) 121, 874
Bsp143I GATC 4 cut(s) 435, 587, 626, 717
BspACI CCGC 4 cut(s) 124, 156, 207, 863
BspANI GGCC 3 cut(s) 159, 186, 662
BspCNI CTCAG 1 cut(s) 442
BspLI GGNNCC 4 cut(s) 43, 568, 628, 835
BspPI GGATC 4 cut(s) 443, 621, 634, 725
BspQI GCTCTTC 1 cut(s) 879
BspT104I TTCGAA 1 cut(s) 420
BspT107I GGYRCC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 708
BsrI ACTGG 1 cut(s) 382
BssECI CCNNGG 1 cut(s) 555
BssMI GATC 4 cut(s) 435, 587, 626, 717
BssNI GRCGYC 1 cut(s) 42
Bst2UI CCWGG 3 cut(s) 17, 337, 557
Bst4CI ACNGT 3 cut(s) 176, 410, 483
Bst6I CTCTTC 5 cut(s) 79, 85, 91, 97, 879
BstACI GRCGYC 1 cut(s) 42
BstAPI GCANNNNNTGC 1 cut(s) 851
BstBI TTCGAA 1 cut(s) 420
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 2 cut(s) 450, 584
BstF5I GGATG 5 cut(s) 29, 250, 297, 551, 688
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 4 cut(s) 438, 590, 629, 720
BstMAI GTCTC 4 cut(s) 368, 472, 503, 642
BstMBI GATC 4 cut(s) 435, 587, 626, 717
BstMWI GCNNNNNNNGC 3 cut(s) 192, 206, 851
BstNI CCWGG 3 cut(s) 17, 337, 557
BstNSI RCATGY 1 cut(s) 895
BstSCI CCNGG 3 cut(s) 15, 335, 555
BstSFI CTRYAG 1 cut(s) 406
BstV1I GCAGC 1 cut(s) 804
BstX2I RGATCY 4 cut(s) 435, 587, 626, 717
BstYI RGATCY 4 cut(s) 435, 587, 626, 717
BsuRI GGCC 3 cut(s) 159, 186, 662
BtsCI GGATG 5 cut(s) 29, 250, 297, 551, 688
BtsIMutI CAGTG 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 241
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 1 cut(s) 44
Cfr13I GGNCC 2 cut(s) 13, 184
CviAII CATG 4 cut(s) 72, 714, 823, 892
DdeI CTNAG 2 cut(s) 450, 584
DinI GGCGCC 1 cut(s) 43
DpnI GATC 4 cut(s) 437, 589, 628, 719
DpnII GATC 4 cut(s) 435, 587, 626, 717
DraIII CACNNNGTG 1 cut(s) 753
EaeI YGGCCR 1 cut(s) 157
Eam1104I CTCTTC 5 cut(s) 79, 85, 91, 97, 879
EarI CTCTTC 5 cut(s) 79, 85, 91, 97, 879
EciI GGCGGA 2 cut(s) 139, 196
Ecl136II GAGCTC 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 121
Eco32I GATATC 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 13
Eco53kI GAGCTC 1 cut(s) 119
Eco57I CTGAAG 2 cut(s) 556, 561
EcoICRI GAGCTC 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 13
EcoRI GAATTC 1 cut(s) 416
EcoRII CCWGG 3 cut(s) 15, 335, 555
EcoRV GATATC 1 cut(s) 214
EcoT22I ATGCAT 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 121
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
Esp3I CGTCTC 1 cut(s) 472
FaeI CATG 4 cut(s) 75, 717, 826, 895
FalI AAGNNNNNCTT 2 cut(s) 858, 890
FaqI GGGAC 1 cut(s) 60
FatI CATG 4 cut(s) 71, 713, 822, 891
FauNDI CATATG 2 cut(s) 310, 517
FblI GTMKAC 1 cut(s) 382
Fnu4HI GCNGC 2 cut(s) 157, 793
FokI GGATG 5 cut(s) 36, 237, 284, 538, 695
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 2 cut(s) 157, 793
GlaI GCGC 1 cut(s) 43
GluI GCNGC 2 cut(s) 157, 793
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 3 cut(s) 159, 186, 662
HhaI GCGC 1 cut(s) 44
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 4 cut(s) 75, 717, 826, 895
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HinfI GANTC 2 cut(s) 166, 269
HphI GGTGA 2 cut(s) 466, 923
Hpy166II GTNNAC 3 cut(s) 151, 383, 524
Hpy188I TCNGA 2 cut(s) 369, 541
Hpy188III TCNNGA 4 cut(s) 217, 254, 292, 413
Hpy8I GTNNAC 3 cut(s) 151, 383, 524
HpyAV CCTTC 4 cut(s) 242, 536, 580, 724
HpyCH4III ACNGT 3 cut(s) 176, 410, 483
HpyCH4IV ACGT 2 cut(s) 472, 705
HpyCH4V TGCA 6 cut(s) 27, 616, 713, 767, 845, 854
HpyF10VI GCNNNNNNNGC 3 cut(s) 192, 206, 851
HpyF3I CTNAG 2 cut(s) 450, 584
HpySE526I ACGT 2 cut(s) 472, 705
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 4 cut(s) 75, 717, 826, 895
HspAI GCGC 1 cut(s) 42
KasI GGCGCC 1 cut(s) 41
Kzo9I GATC 4 cut(s) 435, 587, 626, 717
LguI GCTCTTC 1 cut(s) 879
LmnI GCTCC 1 cut(s) 839
Lsp1109I GCAGC 1 cut(s) 804
LweI GCATC 5 cut(s) 14, 143, 306, 545, 673
MaeII ACGT 2 cut(s) 472, 705
MaeIII GTNAC 1 cut(s) 701
MalI GATC 4 cut(s) 437, 589, 628, 719
MboI GATC 4 cut(s) 435, 587, 626, 717
MboII GAAGA 7 cut(s) 96, 102, 108, 114, 434, 475, 866
MflI RGATCY 4 cut(s) 435, 587, 626, 717
MhlI GDGCHC 2 cut(s) 121, 874
MluCI AATT 4 cut(s) 58, 362, 416, 919
Mly113I GGCGCC 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 660
Mph1103I ATGCAT 1 cut(s) 29
MseI TTAA 2 cut(s) 468, 922
MslI CAYNNNNRTG 3 cut(s) 174, 255, 495
MspR9I CCNGG 3 cut(s) 17, 337, 557
MvaI CCWGG 3 cut(s) 17, 337, 557
MwoI GCNNNNNNNGC 3 cut(s) 192, 206, 851
NarI GGCGCC 1 cut(s) 42
NdeI CATATG 2 cut(s) 310, 517
NdeII GATC 4 cut(s) 435, 587, 626, 717
NlaIII CATG 4 cut(s) 75, 717, 826, 895
NlaIV GGNNCC 4 cut(s) 43, 568, 628, 835
NmeAIII GCCGAG 1 cut(s) 100
NsiI ATGCAT 1 cut(s) 29
NspI RCATGY 1 cut(s) 895
NspV TTCGAA 1 cut(s) 420
OliI CACNNNNGTG 1 cut(s) 174
PciI ACATGT 1 cut(s) 891
PciSI GCTCTTC 1 cut(s) 879
PfeI GAWTC 2 cut(s) 166, 269
PflFI GACNNNGTC 1 cut(s) 72
PkrI GCNGC 2 cut(s) 158, 794
PluTI GGCGCC 1 cut(s) 45
PpuMI RGGWCCY 1 cut(s) 13
PscI ACATGT 1 cut(s) 891
PsiI TTATAA 1 cut(s) 495
Psp124BI GAGCTC 1 cut(s) 121
Psp5II RGGWCCY 1 cut(s) 13
Psp6I CCWGG 3 cut(s) 15, 335, 555
PspGI CCWGG 3 cut(s) 15, 335, 555
PspN4I GGNNCC 4 cut(s) 43, 568, 628, 835
PspPI GGNCC 2 cut(s) 13, 184
PspPPI RGGWCCY 1 cut(s) 13
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 4 cut(s) 435, 587, 626, 717
PsyI GACNNNGTC 1 cut(s) 72
RseI CAYNNNNRTG 3 cut(s) 174, 255, 495
SacI GAGCTC 1 cut(s) 121
SapI GCTCTTC 1 cut(s) 879
SaqAI TTAA 2 cut(s) 468, 922
SatI GCNGC 2 cut(s) 157, 793
Sau3AI GATC 4 cut(s) 435, 587, 626, 717
Sau96I GGNCC 2 cut(s) 13, 184
ScrFI CCNGG 3 cut(s) 17, 337, 557
SduI GDGCHC 2 cut(s) 121, 874
SfaNI GCATC 5 cut(s) 14, 143, 306, 545, 673
SfcI CTRYAG 1 cut(s) 406
SfoI GGCGCC 1 cut(s) 43
SfuI TTCGAA 1 cut(s) 420
SinI GGWCC 1 cut(s) 13
SmiMI CAYNNNNRTG 3 cut(s) 174, 255, 495
SmlI CTYRAG 2 cut(s) 46, 273
SmoI CTYRAG 2 cut(s) 46, 273
Sse9I AATT 4 cut(s) 58, 362, 416, 919
SsiI CCGC 4 cut(s) 124, 156, 207, 863
SspDI GGCGCC 1 cut(s) 41
SstI GAGCTC 1 cut(s) 121
StyD4I CCNGG 3 cut(s) 15, 335, 555
TaaI ACNGT 3 cut(s) 176, 410, 483
TaiI ACGT 2 cut(s) 475, 708
TaqI TCGA 2 cut(s) 62, 420
TasI AATT 4 cut(s) 58, 362, 416, 919
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 2 cut(s) 166, 269
Tru1I TTAA 2 cut(s) 468, 922
Tru9I TTAA 2 cut(s) 468, 922
TscAI CASTG 1 cut(s) 43
TseI GCWGC 1 cut(s) 792
TspDTI ATGAA 2 cut(s) 342, 546
TspGWI ACGGA 2 cut(s) 290, 415
TspRI CASTG 1 cut(s) 43
Tth111I GACNNNGTC 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 13
XapI RAATTY 2 cut(s) 362, 416
XceI RCATGY 1 cut(s) 895
XcmI CCANNNNNNNNNTGG 1 cut(s) 796
XmiI GTMKAC 1 cut(s) 382
Zsp2I ATGCAT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.