RLG00000022482

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0013134
Physical Location & Seq
Reverse (-)
1365123 .. 1367523
2401 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022482

Sequence Viewer

Length: 933 bp
ATGGTAGGGCAGGTCCTGGTGGGATGCATACCCATCAGTGGCGCCTTGAGTTTCAGTAATTCGATAGGACCATGTCCCAGAGGAAGTGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAGGAGGCAGTGCTCGGCGGATTACGGCATCATCATCAGTAAACGGCGGCCACCAGAATCACTACGGTGTTCTGGGCCTTACACGCTATGCCACCTCCGCCGATATCAAGAGGGCTTATCGCCTTCTCGCTCGCAAGTATCATCCTGATGTTAGCAAGGATTCTCAAGCTGGACAAGTATTCAAGAGCATCCGTCAAGCATATGAGATACTATCTAATGAAGCAACCAGGATTGAGTATGACCAAGAACTTAAATTTCAGAAAGAGACTGCTAGACAATATAGAGGAAAACGGAACTACAGTCCTGAATTCGAAGATGGTGTAAGGATCTATAAGTGGGCTGAGGTGAGGCAGAAGATTAAACGTGAGAGACAGTGGGAACATTATAATGTAAATGGAGAGACATCATATGGTAAACCAGATGAAGCATCTGAAGGAGAGCCATCCCAGGAGAGAGGTTCCTTCAGCGAAGTGCTTAGATCTGCCTTTGTATCTCTGTTTTTATTGCAGATGTTTGGATCCCGTTTGTCTCTCACTTTTAGTAGTCTGATGGCTTTGTTTGATAGGAAGTTGGATGCTGGATATAAGATTGGGTACGTCATTGCATGGATCTTGGGTGGGAGGGGTGGTATCTTGCTCACTCTGTGTTTATCTTTTGCAAGTTGGGTTTGTGGAAAAACCAGCAGCAGTATGGTTGCTCTGGTGGTGGTAGCCATGTGGGTTGGCTCCAATCTTGCAAGATTTGCACCACTCCCGCAAGGTGCTCTTCTTACACTCCTCTACATGTCTATCAAGCTACAAGGTGATTTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

311

Amino Acids

34.29

Weight (kDa)

9.87

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 59 - 120 3.1e-20 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013134)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18140
fragaria_vesca FvH4_1g28130 FvH4_1g28130
malus_domestica MD12G1003800.v1.1
prunus_persica Prupe.7G004300_v2.0.a1
pyrus_communis pycom12g00320
rosa_chinensis RchiOBHm_Chr3g0497071
rosa_laevigata RLG00000022482
rosa_multiflora Rmu_co8330937.1_g000001 Rmu_sc0011396.1_g000005 Rmu_ssc0000003.1_g000038
rosa_roxburghii Rroxscaffold_6G00388410
rosa_rugosa Rorug03G0289400
rosa_samantha Rh3AG333900 Rh3BG371000 Rh3CG367900 Rh3DG368900
rosa_wichuraiana Rw3G029310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 504
AccB1I GGYRCC 1 cut(s) 41
AciI CCGC 4 cut(s) 136, 165, 216, 872
AclWI GGATC 4 cut(s) 452, 630, 643, 734
AcoI YGGCCR 1 cut(s) 166
AcsI RAATTY 2 cut(s) 371, 425
AcuI CTGAAG 2 cut(s) 565, 570
AcyI GRCGYC 1 cut(s) 42
AdeI CACNNNGTG 1 cut(s) 762
AfaI GTAC 1 cut(s) 713
AfiI CCNNNNNNNGG 1 cut(s) 38
AflIII ACRYGT 1 cut(s) 900
AgsI TTSAA 2 cut(s) 301, 928
AjnI CCWGG 3 cut(s) 15, 344, 564
AleI CACNNNNGTG 1 cut(s) 183
AluBI AGCT 2 cut(s) 287, 913
AluI AGCT 2 cut(s) 287, 913
Alw21I GWGCWC 2 cut(s) 133, 883
Alw26I GTCTC 4 cut(s) 377, 481, 512, 651
AlwI GGATC 4 cut(s) 452, 630, 643, 734
AlwNI CAGNNNCTG 1 cut(s) 16
AoxI GGCC 2 cut(s) 166, 193
ApeKI GCWGC 1 cut(s) 801
ApoI RAATTY 2 cut(s) 371, 425
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 3 cut(s) 13, 68, 193
AsuHPI GGTGA 2 cut(s) 475, 932
AsuII TTCGAA 1 cut(s) 429
AvaII GGWCC 2 cut(s) 13, 68
BamHI GGATCC 1 cut(s) 635
BanI GGYRCC 1 cut(s) 41
Bbv12I GWGCWC 2 cut(s) 133, 883
BbvCI CCTCAGC 1 cut(s) 459
BbvI GCAGC 1 cut(s) 813
BccI CCATC 4 cut(s) 41, 428, 568, 661
BceAI ACGGC 2 cut(s) 159, 178
BciT130I CCWGG 3 cut(s) 17, 346, 566
BcoDI GTCTC 4 cut(s) 377, 481, 512, 651
BfaI CTAG 1 cut(s) 390
BfmI CTRYAG 1 cut(s) 415
BfoI RGCGCY 1 cut(s) 45
BglII AGATCT 1 cut(s) 596
BisI GCNGC 2 cut(s) 166, 802
BlsI GCNGC 2 cut(s) 167, 803
Bme1390I CCNGG 3 cut(s) 17, 346, 566
Bme18I GGWCC 2 cut(s) 13, 68
BmgT120I GGNCC 3 cut(s) 13, 68, 193
BmiI GGNNCC 4 cut(s) 43, 577, 637, 844
BmrFI CCNGG 3 cut(s) 17, 346, 566
BmsI GCATC 5 cut(s) 14, 155, 315, 554, 682
Bpu10I CCTNAGC 1 cut(s) 459
Bpu14I TTCGAA 1 cut(s) 429
BpuEI CTTGAG 2 cut(s) 67, 267
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 564
BsaXI ACNNNNNCTCC 2 cut(s) 730, 760
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse3DI GCAATG 1 cut(s) 717
BseBI CCWGG 3 cut(s) 17, 346, 566
BseDI CCNNGG 1 cut(s) 564
BseGI GGATG 5 cut(s) 29, 259, 306, 560, 697
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMI GCAATG 1 cut(s) 717
BseMII CTCAG 1 cut(s) 450
BseRI GAGGAG 3 cut(s) 132, 135, 884
BseXI GCAGC 1 cut(s) 813
BshFI GGCC 2 cut(s) 168, 195
BshNI GGYRCC 1 cut(s) 41
BsiHKAI GWGCWC 2 cut(s) 133, 883
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 38
BsmAI GTCTC 4 cut(s) 377, 481, 512, 651
BsmFI GGGAC 1 cut(s) 60
BsnI GGCC 2 cut(s) 168, 195
Bsp119I TTCGAA 1 cut(s) 429
Bsp1286I GDGCHC 2 cut(s) 133, 883
Bsp143I GATC 4 cut(s) 444, 596, 635, 726
BspACI CCGC 4 cut(s) 136, 165, 216, 872
BspANI GGCC 2 cut(s) 168, 195
BspCNI CTCAG 1 cut(s) 451
BspLI GGNNCC 4 cut(s) 43, 577, 637, 844
BspPI GGATC 4 cut(s) 452, 630, 643, 734
BspQI GCTCTTC 1 cut(s) 888
BspT104I TTCGAA 1 cut(s) 429
BspT107I GGYRCC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 717
BssECI CCNNGG 1 cut(s) 564
BssMI GATC 4 cut(s) 444, 596, 635, 726
BssNI GRCGYC 1 cut(s) 42
Bst2UI CCWGG 3 cut(s) 17, 346, 566
Bst4CI ACNGT 3 cut(s) 185, 419, 492
Bst6I CTCTTC 6 cut(s) 85, 91, 97, 103, 109, 888
BstACI GRCGYC 1 cut(s) 42
BstAPI GCANNNNNTGC 1 cut(s) 860
BstBI TTCGAA 1 cut(s) 429
BstC8I GCNNGC 1 cut(s) 250
BstDEI CTNAG 2 cut(s) 459, 593
BstF5I GGATG 5 cut(s) 29, 259, 306, 560, 697
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 4 cut(s) 447, 599, 638, 729
BstMAI GTCTC 4 cut(s) 377, 481, 512, 651
BstMBI GATC 4 cut(s) 444, 596, 635, 726
BstMWI GCNNNNNNNGC 3 cut(s) 201, 215, 860
BstNI CCWGG 3 cut(s) 17, 346, 566
BstNSI RCATGY 1 cut(s) 904
BstSCI CCNGG 3 cut(s) 15, 344, 564
BstSFI CTRYAG 1 cut(s) 415
BstV1I GCAGC 1 cut(s) 813
BstX2I RGATCY 4 cut(s) 444, 596, 635, 726
BstYI RGATCY 4 cut(s) 444, 596, 635, 726
BsuRI GGCC 2 cut(s) 168, 195
BtsCI GGATG 5 cut(s) 29, 259, 306, 560, 697
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 3 cut(s) 43, 133, 497
Cac8I GCNNGC 1 cut(s) 250
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 1 cut(s) 44
Cfr13I GGNCC 3 cut(s) 13, 68, 193
Csp6I GTAC 1 cut(s) 712
CviAII CATG 4 cut(s) 72, 723, 832, 901
CviQI GTAC 1 cut(s) 712
DdeI CTNAG 2 cut(s) 459, 593
DinI GGCGCC 1 cut(s) 43
DpnI GATC 4 cut(s) 446, 598, 637, 728
DpnII GATC 4 cut(s) 444, 596, 635, 726
DraIII CACNNNGTG 1 cut(s) 762
EaeI YGGCCR 1 cut(s) 166
Eam1104I CTCTTC 6 cut(s) 85, 91, 97, 103, 109, 888
EarI CTCTTC 6 cut(s) 85, 91, 97, 103, 109, 888
EciI GGCGGA 2 cut(s) 151, 205
Eco32I GATATC 1 cut(s) 223
Eco47I GGWCC 2 cut(s) 13, 68
Eco57I CTGAAG 2 cut(s) 565, 570
EcoO109I RGGNCCY 1 cut(s) 13
EcoRI GAATTC 1 cut(s) 425
EcoRII CCWGG 3 cut(s) 15, 344, 564
EcoRV GATATC 1 cut(s) 223
EcoT22I ATGCAT 1 cut(s) 29
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
FaeI CATG 4 cut(s) 75, 726, 835, 904
FalI AAGNNNNNCTT 2 cut(s) 867, 899
FaqI GGGAC 1 cut(s) 60
FatI CATG 4 cut(s) 71, 722, 831, 900
FauI CCCGC 1 cut(s) 879
FauNDI CATATG 2 cut(s) 319, 526
Fnu4HI GCNGC 2 cut(s) 166, 802
FokI GGATG 5 cut(s) 36, 246, 293, 547, 704
Fsp4HI GCNGC 2 cut(s) 166, 802
FspBI CTAG 1 cut(s) 390
GlaI GCGC 1 cut(s) 43
GluI GCNGC 2 cut(s) 166, 802
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 2 cut(s) 168, 195
HhaI GCGC 1 cut(s) 44
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 4 cut(s) 75, 726, 835, 904
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HinfI GANTC 2 cut(s) 175, 278
HphI GGTGA 2 cut(s) 475, 932
Hpy166II GTNNAC 2 cut(s) 160, 533
Hpy188I TCNGA 3 cut(s) 378, 550, 666
Hpy188III TCNNGA 4 cut(s) 226, 263, 301, 422
Hpy8I GTNNAC 2 cut(s) 160, 533
HpyAV CCTTC 3 cut(s) 251, 545, 589
HpyCH4III ACNGT 3 cut(s) 185, 419, 492
HpyCH4IV ACGT 2 cut(s) 481, 714
HpyCH4V TGCA 6 cut(s) 27, 625, 722, 776, 854, 863
HpyF10VI GCNNNNNNNGC 3 cut(s) 201, 215, 860
HpyF3I CTNAG 2 cut(s) 459, 593
HpySE526I ACGT 2 cut(s) 481, 714
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 4 cut(s) 75, 726, 835, 904
HspAI GCGC 1 cut(s) 42
KasI GGCGCC 1 cut(s) 41
Kzo9I GATC 4 cut(s) 444, 596, 635, 726
LguI GCTCTTC 1 cut(s) 888
LmnI GCTCC 1 cut(s) 848
Lsp1109I GCAGC 1 cut(s) 813
LweI GCATC 5 cut(s) 14, 155, 315, 554, 682
MaeI CTAG 1 cut(s) 390
MaeII ACGT 2 cut(s) 481, 714
MalI GATC 4 cut(s) 446, 598, 637, 728
MboI GATC 4 cut(s) 444, 596, 635, 726
MboII GAAGA 8 cut(s) 102, 108, 114, 120, 126, 443, 484, 875
MflI RGATCY 4 cut(s) 444, 596, 635, 726
MhlI GDGCHC 2 cut(s) 133, 883
MluCI AATT 4 cut(s) 58, 371, 425, 928
Mly113I GGCGCC 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 669
Mph1103I ATGCAT 1 cut(s) 29
MseI TTAA 3 cut(s) 369, 477, 931
MslI CAYNNNNRTG 3 cut(s) 183, 264, 504
MspR9I CCNGG 3 cut(s) 17, 346, 566
MvaI CCWGG 3 cut(s) 17, 346, 566
MwoI GCNNNNNNNGC 3 cut(s) 201, 215, 860
NarI GGCGCC 1 cut(s) 42
NdeI CATATG 2 cut(s) 319, 526
NdeII GATC 4 cut(s) 444, 596, 635, 726
NlaIII CATG 4 cut(s) 75, 726, 835, 904
NlaIV GGNNCC 4 cut(s) 43, 577, 637, 844
NmeAIII GCCGAG 1 cut(s) 112
NsiI ATGCAT 1 cut(s) 29
NspI RCATGY 1 cut(s) 904
NspV TTCGAA 1 cut(s) 429
OliI CACNNNNGTG 1 cut(s) 183
PciI ACATGT 1 cut(s) 900
PciSI GCTCTTC 1 cut(s) 888
PfeI GAWTC 2 cut(s) 175, 278
PflFI GACNNNGTC 1 cut(s) 72
PkrI GCNGC 2 cut(s) 167, 803
PluTI GGCGCC 1 cut(s) 45
PpuMI RGGWCCY 1 cut(s) 13
PscI ACATGT 1 cut(s) 900
PsiI TTATAA 1 cut(s) 504
Psp5II RGGWCCY 1 cut(s) 13
Psp6I CCWGG 3 cut(s) 15, 344, 564
PspGI CCWGG 3 cut(s) 15, 344, 564
PspN4I GGNNCC 4 cut(s) 43, 577, 637, 844
PspPI GGNCC 3 cut(s) 13, 68, 193
PspPPI RGGWCCY 1 cut(s) 13
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 4 cut(s) 444, 596, 635, 726
PsyI GACNNNGTC 1 cut(s) 72
RsaI GTAC 1 cut(s) 713
RsaNI GTAC 1 cut(s) 712
RseI CAYNNNNRTG 3 cut(s) 183, 264, 504
SapI GCTCTTC 1 cut(s) 888
SaqAI TTAA 3 cut(s) 369, 477, 931
SatI GCNGC 2 cut(s) 166, 802
Sau3AI GATC 4 cut(s) 444, 596, 635, 726
Sau96I GGNCC 3 cut(s) 13, 68, 193
ScrFI CCNGG 3 cut(s) 17, 346, 566
SduI GDGCHC 2 cut(s) 133, 883
SfaNI GCATC 5 cut(s) 14, 155, 315, 554, 682
SfcI CTRYAG 1 cut(s) 415
SfoI GGCGCC 1 cut(s) 43
SfuI TTCGAA 1 cut(s) 429
SinI GGWCC 2 cut(s) 13, 68
SmiMI CAYNNNNRTG 3 cut(s) 183, 264, 504
SmlI CTYRAG 2 cut(s) 46, 282
SmoI CTYRAG 2 cut(s) 46, 282
Sse9I AATT 4 cut(s) 58, 371, 425, 928
SsiI CCGC 4 cut(s) 136, 165, 216, 872
SspDI GGCGCC 1 cut(s) 41
SspMI CTAG 1 cut(s) 390
StyD4I CCNGG 3 cut(s) 15, 344, 564
TaaI ACNGT 3 cut(s) 185, 419, 492
TaiI ACGT 2 cut(s) 484, 717
TaqI TCGA 2 cut(s) 62, 429
TasI AATT 4 cut(s) 58, 371, 425, 928
TauI GCSGC 1 cut(s) 168
TfiI GAWTC 2 cut(s) 175, 278
Tru1I TTAA 3 cut(s) 369, 477, 931
Tru9I TTAA 3 cut(s) 369, 477, 931
TscAI CASTG 3 cut(s) 43, 133, 497
TseI GCWGC 1 cut(s) 801
TspDTI ATGAA 2 cut(s) 351, 555
TspGWI ACGGA 2 cut(s) 299, 424
TspRI CASTG 3 cut(s) 43, 133, 497
Tth111I GACNNNGTC 1 cut(s) 72
VpaK11BI GGWCC 2 cut(s) 13, 68
XapI RAATTY 2 cut(s) 371, 425
XceI RCATGY 1 cut(s) 904
XcmI CCANNNNNNNNNTGG 1 cut(s) 805
XspI CTAG 1 cut(s) 390
Zsp2I ATGCAT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.