Rmu_ssc0000003.1_g000038

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000003.1
OG0013134
Physical Location & Seq
Reverse (-)
134180 .. 136589
2410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000003.1_g000038.1.cds

Sequence Viewer

Length: 921 bp
atggtagggctggtcctggtgggatgcatacccatcagtggcgccttgagtttcagtaattcgatacgaccatgtcccataggaagaggaagaggaagaggaagaggaggaggcagagctcggcggattacggcatcatcatcagtaaacggcggccaccagaatcactacggtgttctgggccttacacgctatgccacctccgccgatatcaagagggcttatcgccttctcgctcgcaagtatcatcctgatgttagcaaggattctcaagctggacaagtattcaagagcatccgtcaagcatatgagatactatctaatgaagcaaccaggattgagtatgaccaagaactcaaatttcagaaagagactggtagacaatatagaggaaaacggaactacagtcctgaattcgaagatggtgtaaggatctataagtgggctgaggtgaggcagaagattaaacgtgagagacggtgggaacattataatgtaaatggagagacatcatatgggaaacctgatgaagcatctgaaggagagccatcccaggagagaggttccttcagcgaagtgcttagatctgcctttgtatctttgtttttattgcagacgtttggatcccgtttgtctctcacttttagtagtttgatggccttgtttgataggaagttggatgctggatataagattggttacgtcattgcatggatcttgggtgggaagggtggtatcttgctcactctgtgtttatcttttgcaagttgggtttgtggaaaaaccagcagcagtatggttgctctggtggtggtagccatgtgggttggctccaatcttgcaagatttgcaccacttccgcaaggtgctcttcttacactcctctacatgtctatcaagctacaaggtgatttgaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

306

Amino Acids

34.0

Weight (kDa)

9.9

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013134)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18140
fragaria_vesca FvH4_1g28130 FvH4_1g28130
malus_domestica MD12G1003800.v1.1
prunus_persica Prupe.7G004300_v2.0.a1
pyrus_communis pycom12g00320
rosa_chinensis RchiOBHm_Chr3g0497071
rosa_laevigata RLG00000022482
rosa_multiflora Rmu_co8330937.1_g000001 Rmu_sc0011396.1_g000005 Rmu_ssc0000003.1_g000038
rosa_roxburghii Rroxscaffold_6G00388410
rosa_rugosa Rorug03G0289400
rosa_samantha Rh3AG333900 Rh3BG371000 Rh3CG367900 Rh3DG368900
rosa_wichuraiana Rw3G029310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 492
AccB1I GGYRCC 1 cut(s) 41
AccI GTMKAC 1 cut(s) 379
AciI CCGC 4 cut(s) 124, 153, 204, 860
AclWI GGATC 4 cut(s) 440, 618, 631, 722
AcoI YGGCCR 1 cut(s) 154
AcsI RAATTY 2 cut(s) 359, 413
AcuI CTGAAG 2 cut(s) 553, 558
AcyI GRCGYC 1 cut(s) 42
AdeI CACNNNGTG 1 cut(s) 750
AfiI CCNNNNNNNGG 1 cut(s) 38
AflIII ACRYGT 1 cut(s) 888
AgsI TTSAA 2 cut(s) 289, 916
AjnI CCWGG 3 cut(s) 15, 332, 552
AleI CACNNNNGTG 1 cut(s) 171
AluBI AGCT 3 cut(s) 119, 275, 901
AluI AGCT 3 cut(s) 119, 275, 901
Alw21I GWGCWC 2 cut(s) 121, 871
Alw26I GTCTC 4 cut(s) 365, 469, 500, 639
AlwI GGATC 4 cut(s) 440, 618, 631, 722
AoxI GGCC 3 cut(s) 154, 181, 657
ApeKI GCWGC 1 cut(s) 789
ApoI RAATTY 2 cut(s) 359, 413
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 2 cut(s) 13, 181
AsuHPI GGTGA 2 cut(s) 463, 920
AsuII TTCGAA 1 cut(s) 417
AvaII GGWCC 1 cut(s) 13
BamHI GGATCC 1 cut(s) 623
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 121
Bbv12I GWGCWC 2 cut(s) 121, 871
BbvCI CCTCAGC 1 cut(s) 447
BbvI GCAGC 1 cut(s) 801
BccI CCATC 4 cut(s) 41, 416, 556, 649
BceAI ACGGC 2 cut(s) 147, 166
BciT130I CCWGG 3 cut(s) 17, 334, 554
BcoDI GTCTC 4 cut(s) 365, 469, 500, 639
BfmI CTRYAG 1 cut(s) 403
BfoI RGCGCY 1 cut(s) 45
BglII AGATCT 1 cut(s) 584
BisI GCNGC 2 cut(s) 154, 790
BlsI GCNGC 2 cut(s) 155, 791
Bme1390I CCNGG 3 cut(s) 17, 334, 554
Bme18I GGWCC 1 cut(s) 13
BmgT120I GGNCC 2 cut(s) 13, 181
BmiI GGNNCC 4 cut(s) 43, 565, 625, 832
BmrFI CCNGG 3 cut(s) 17, 334, 554
BmsI GCATC 5 cut(s) 14, 143, 303, 542, 670
Bpu10I CCTNAGC 1 cut(s) 447
Bpu14I TTCGAA 1 cut(s) 417
BpuEI CTTGAG 2 cut(s) 67, 255
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 552
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse1I ACTGG 1 cut(s) 379
Bse3DI GCAATG 1 cut(s) 705
BseBI CCWGG 3 cut(s) 17, 334, 554
BseDI CCNNGG 1 cut(s) 552
BseGI GGATG 5 cut(s) 29, 247, 294, 548, 685
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMI GCAATG 1 cut(s) 705
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 1 cut(s) 379
BseRI GAGGAG 3 cut(s) 120, 123, 872
BseXI GCAGC 1 cut(s) 801
BshFI GGCC 3 cut(s) 156, 183, 659
BshNI GGYRCC 1 cut(s) 41
BsiHKAI GWGCWC 2 cut(s) 121, 871
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 38
BsmAI GTCTC 4 cut(s) 365, 469, 500, 639
BsmBI CGTCTC 1 cut(s) 469
BsmFI GGGAC 1 cut(s) 60
BsnI GGCC 3 cut(s) 156, 183, 659
Bsp119I TTCGAA 1 cut(s) 417
Bsp1286I GDGCHC 2 cut(s) 121, 871
Bsp143I GATC 4 cut(s) 432, 584, 623, 714
BspACI CCGC 4 cut(s) 124, 153, 204, 860
BspANI GGCC 3 cut(s) 156, 183, 659
BspCNI CTCAG 1 cut(s) 439
BspLI GGNNCC 4 cut(s) 43, 565, 625, 832
BspPI GGATC 4 cut(s) 440, 618, 631, 722
BspQI GCTCTTC 1 cut(s) 876
BspT104I TTCGAA 1 cut(s) 417
BspT107I GGYRCC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 705
BsrI ACTGG 1 cut(s) 379
BssECI CCNNGG 1 cut(s) 552
BssMI GATC 4 cut(s) 432, 584, 623, 714
BssNI GRCGYC 1 cut(s) 42
Bst2UI CCWGG 3 cut(s) 17, 334, 554
Bst4CI ACNGT 3 cut(s) 173, 407, 480
Bst6I CTCTTC 5 cut(s) 79, 85, 91, 97, 876
BstACI GRCGYC 1 cut(s) 42
BstAPI GCANNNNNTGC 1 cut(s) 848
BstBI TTCGAA 1 cut(s) 417
BstC8I GCNNGC 1 cut(s) 238
BstDEI CTNAG 2 cut(s) 447, 581
BstF5I GGATG 5 cut(s) 29, 247, 294, 548, 685
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 4 cut(s) 435, 587, 626, 717
BstMAI GTCTC 4 cut(s) 365, 469, 500, 639
BstMBI GATC 4 cut(s) 432, 584, 623, 714
BstMWI GCNNNNNNNGC 3 cut(s) 189, 203, 848
BstNI CCWGG 3 cut(s) 17, 334, 554
BstNSI RCATGY 1 cut(s) 892
BstSCI CCNGG 3 cut(s) 15, 332, 552
BstSFI CTRYAG 1 cut(s) 403
BstV1I GCAGC 1 cut(s) 801
BstX2I RGATCY 4 cut(s) 432, 584, 623, 714
BstYI RGATCY 4 cut(s) 432, 584, 623, 714
BsuRI GGCC 3 cut(s) 156, 183, 659
BtsCI GGATG 5 cut(s) 29, 247, 294, 548, 685
BtsIMutI CAGTG 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 238
CfoI GCGC 1 cut(s) 44
Cfr13I GGNCC 2 cut(s) 13, 181
CviAII CATG 4 cut(s) 72, 711, 820, 889
DdeI CTNAG 2 cut(s) 447, 581
DinI GGCGCC 1 cut(s) 43
DpnI GATC 4 cut(s) 434, 586, 625, 716
DpnII GATC 4 cut(s) 432, 584, 623, 714
DraIII CACNNNGTG 1 cut(s) 750
EaeI YGGCCR 1 cut(s) 154
Eam1104I CTCTTC 5 cut(s) 79, 85, 91, 97, 876
EarI CTCTTC 5 cut(s) 79, 85, 91, 97, 876
EciI GGCGGA 2 cut(s) 139, 193
Ecl136II GAGCTC 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 121
Eco32I GATATC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 13
Eco53kI GAGCTC 1 cut(s) 119
Eco57I CTGAAG 2 cut(s) 553, 558
EcoICRI GAGCTC 1 cut(s) 119
EcoRI GAATTC 1 cut(s) 413
EcoRII CCWGG 3 cut(s) 15, 332, 552
EcoRV GATATC 1 cut(s) 211
EcoT22I ATGCAT 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 121
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
Esp3I CGTCTC 1 cut(s) 469
FaeI CATG 4 cut(s) 75, 714, 823, 892
FalI AAGNNNNNCTT 2 cut(s) 855, 887
FaqI GGGAC 1 cut(s) 60
FatI CATG 4 cut(s) 71, 710, 819, 888
FauNDI CATATG 2 cut(s) 307, 514
FblI GTMKAC 1 cut(s) 379
Fnu4HI GCNGC 2 cut(s) 154, 790
FokI GGATG 5 cut(s) 36, 234, 281, 535, 692
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 2 cut(s) 154, 790
GlaI GCGC 1 cut(s) 43
GluI GCNGC 2 cut(s) 154, 790
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 3 cut(s) 156, 183, 659
HhaI GCGC 1 cut(s) 44
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 4 cut(s) 75, 714, 823, 892
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HinfI GANTC 2 cut(s) 163, 266
HphI GGTGA 2 cut(s) 463, 920
Hpy166II GTNNAC 2 cut(s) 148, 380
Hpy188I TCNGA 2 cut(s) 366, 538
Hpy188III TCNNGA 4 cut(s) 214, 251, 289, 410
Hpy8I GTNNAC 2 cut(s) 148, 380
HpyAV CCTTC 4 cut(s) 239, 533, 577, 721
HpyCH4III ACNGT 3 cut(s) 173, 407, 480
HpyCH4IV ACGT 3 cut(s) 469, 617, 702
HpyCH4V TGCA 6 cut(s) 27, 613, 710, 764, 842, 851
HpyF10VI GCNNNNNNNGC 3 cut(s) 189, 203, 848
HpyF3I CTNAG 2 cut(s) 447, 581
HpySE526I ACGT 3 cut(s) 469, 617, 702
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 4 cut(s) 75, 714, 823, 892
HspAI GCGC 1 cut(s) 42
KasI GGCGCC 1 cut(s) 41
Kzo9I GATC 4 cut(s) 432, 584, 623, 714
LguI GCTCTTC 1 cut(s) 876
LmnI GCTCC 1 cut(s) 836
Lsp1109I GCAGC 1 cut(s) 801
LweI GCATC 5 cut(s) 14, 143, 303, 542, 670
MaeII ACGT 3 cut(s) 469, 617, 702
MaeIII GTNAC 1 cut(s) 698
MalI GATC 4 cut(s) 434, 586, 625, 716
MboI GATC 4 cut(s) 432, 584, 623, 714
MboII GAAGA 7 cut(s) 96, 102, 108, 114, 431, 472, 863
MflI RGATCY 4 cut(s) 432, 584, 623, 714
MhlI GDGCHC 2 cut(s) 121, 871
MluCI AATT 4 cut(s) 58, 359, 413, 916
Mly113I GGCGCC 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 657
Mph1103I ATGCAT 1 cut(s) 29
MseI TTAA 2 cut(s) 465, 919
MslI CAYNNNNRTG 3 cut(s) 171, 252, 492
MspR9I CCNGG 3 cut(s) 17, 334, 554
MvaI CCWGG 3 cut(s) 17, 334, 554
MwoI GCNNNNNNNGC 3 cut(s) 189, 203, 848
NarI GGCGCC 1 cut(s) 42
NdeI CATATG 2 cut(s) 307, 514
NdeII GATC 4 cut(s) 432, 584, 623, 714
NlaIII CATG 4 cut(s) 75, 714, 823, 892
NlaIV GGNNCC 4 cut(s) 43, 565, 625, 832
NmeAIII GCCGAG 1 cut(s) 100
NsiI ATGCAT 1 cut(s) 29
NspI RCATGY 1 cut(s) 892
NspV TTCGAA 1 cut(s) 417
OliI CACNNNNGTG 1 cut(s) 171
PciI ACATGT 1 cut(s) 888
PciSI GCTCTTC 1 cut(s) 876
PfeI GAWTC 2 cut(s) 163, 266
PflFI GACNNNGTC 1 cut(s) 72
PkrI GCNGC 2 cut(s) 155, 791
PluTI GGCGCC 1 cut(s) 45
PscI ACATGT 1 cut(s) 888
PsiI TTATAA 1 cut(s) 492
Psp124BI GAGCTC 1 cut(s) 121
Psp6I CCWGG 3 cut(s) 15, 332, 552
PspGI CCWGG 3 cut(s) 15, 332, 552
PspN4I GGNNCC 4 cut(s) 43, 565, 625, 832
PspPI GGNCC 2 cut(s) 13, 181
PsuI RGATCY 4 cut(s) 432, 584, 623, 714
PsyI GACNNNGTC 1 cut(s) 72
RseI CAYNNNNRTG 3 cut(s) 171, 252, 492
SacI GAGCTC 1 cut(s) 121
SapI GCTCTTC 1 cut(s) 876
SaqAI TTAA 2 cut(s) 465, 919
SatI GCNGC 2 cut(s) 154, 790
Sau3AI GATC 4 cut(s) 432, 584, 623, 714
Sau96I GGNCC 2 cut(s) 13, 181
ScrFI CCNGG 3 cut(s) 17, 334, 554
SduI GDGCHC 2 cut(s) 121, 871
SfaNI GCATC 5 cut(s) 14, 143, 303, 542, 670
SfcI CTRYAG 1 cut(s) 403
SfoI GGCGCC 1 cut(s) 43
SfuI TTCGAA 1 cut(s) 417
SinI GGWCC 1 cut(s) 13
SmiMI CAYNNNNRTG 3 cut(s) 171, 252, 492
SmlI CTYRAG 2 cut(s) 46, 270
SmoI CTYRAG 2 cut(s) 46, 270
Sse9I AATT 4 cut(s) 58, 359, 413, 916
SsiI CCGC 4 cut(s) 124, 153, 204, 860
SspDI GGCGCC 1 cut(s) 41
SstI GAGCTC 1 cut(s) 121
StyD4I CCNGG 3 cut(s) 15, 332, 552
TaaI ACNGT 3 cut(s) 173, 407, 480
TaiI ACGT 3 cut(s) 472, 620, 705
TaqI TCGA 2 cut(s) 62, 417
TasI AATT 4 cut(s) 58, 359, 413, 916
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 2 cut(s) 163, 266
Tru1I TTAA 2 cut(s) 465, 919
Tru9I TTAA 2 cut(s) 465, 919
TscAI CASTG 1 cut(s) 43
TseI GCWGC 1 cut(s) 789
TspDTI ATGAA 2 cut(s) 339, 543
TspGWI ACGGA 2 cut(s) 287, 412
TspRI CASTG 1 cut(s) 43
Tth111I GACNNNGTC 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 13
XapI RAATTY 2 cut(s) 359, 413
XceI RCATGY 1 cut(s) 892
XcmI CCANNNNNNNNNTGG 1 cut(s) 793
XmiI GTMKAC 1 cut(s) 379
Zsp2I ATGCAT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.