Rorug03G0289400

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0013134
Physical Location & Seq
Forward (+)
29393629 .. 29394569
941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0289400.1

Sequence Viewer

Length: 837 bp
ATGTGGAAGCTGAAAATTGGGGCAGACACAGTAAGAGACGGTGGTGATCATCAATGGCTGAGGAGTGTGAACAATCACTTGGGCCGCCAAGTTTGGGAGTACCATCCAGAGCTTGGGACCTCTGAAGAGCTTCAACAAATCGAAGATGCTCGAAAAGGTTTCTGGGACAATCGATTTGAGACCAAGCACAGCTCTGAACTCCTCATGAGAATTCCGTTTGCAAAGGAGAACCCATGTGTGACTAATCTACCACAACTCAAAGTTAAAGATGCAGAAGAGGTGACAGAAGAGGTCGTGGCAACCACATTACGCAGGGCCATTAATTTTTATTCAACAATCCAGGCACATGATGGTCATTGGCCTGGGGATTATGGGGGTCCCATGTTTGGAGCTCTAAATGCTGTGTTATTCATAGAGCATCAACGGGAGATGTGTAGATATCTCTATAATCATCAGAATAAAGGTGGGGGATGGGGTCTACATATTGAGGGCCCAAGTACCATGTTTGGTACAGCACTAAATTATGTGCTGATGGAAATAGCACGAAAATGGATATTAGACCATGGTGGTGCGACTGCAATCACTTCATGGGGGAAGATGTGGCTTTCAGTACTTGGGGCATATGAATGGTCTGGAAATAATCCACTACCGCCAGAAGTATGGCTATGTCCTTACTCTCTCCCGGTTCATCCAGGAAGGATGTGGTGTCATTGTCGAATGGTGTATTTGCCTATGTCTTATCTGTATGGGAAGAGATTCGTTGGACCAATTACACCTACAATCCAAGTTAAACAGAACAAAGACAAAGGGAAAGTTTGGGAATTTCTGATGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

278

Amino Acids

32.08

Weight (kDa)

7.2

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_N PF13249 139 - 264 3.6e-22 Squalene-hopene cyclase N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013134)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18140
fragaria_vesca FvH4_1g28130 FvH4_1g28130
malus_domestica MD12G1003800.v1.1
prunus_persica Prupe.7G004300_v2.0.a1
pyrus_communis pycom12g00320
rosa_chinensis RchiOBHm_Chr3g0497071
rosa_laevigata RLG00000022482
rosa_multiflora Rmu_co8330937.1_g000001 Rmu_sc0011396.1_g000005 Rmu_ssc0000003.1_g000038
rosa_roxburghii Rroxscaffold_6G00388410
rosa_rugosa Rorug03G0289400
rosa_samantha Rh3AG333900 Rh3BG371000 Rh3CG367900 Rh3DG368900
rosa_wichuraiana Rw3G029310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 113
AccI GTMKAC 1 cut(s) 478
AciI CCGC 2 cut(s) 85, 650
AcsI RAATTY 2 cut(s) 210, 821
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 4 cut(s) 101, 499, 511, 612
AfiI CCNNNNNNNGG 3 cut(s) 94, 113, 386
AgsI TTSAA 2 cut(s) 134, 333
AjnI CCWGG 3 cut(s) 339, 361, 691
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AluBI AGCT 5 cut(s) 10, 112, 130, 192, 392
AluI AGCT 5 cut(s) 10, 112, 130, 192, 392
Alw21I GWGCWC 1 cut(s) 394
Alw26I GTCTC 2 cut(s) 30, 173
AoxI GGCC 4 cut(s) 82, 315, 359, 490
ApaI GGGCCC 1 cut(s) 494
ApoI RAATTY 2 cut(s) 210, 821
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AseI ATTAAT 1 cut(s) 321
Asp700I GAANNNNTTC 2 cut(s) 129, 755
AspS9I GGNCC 7 cut(s) 82, 117, 315, 377, 490, 491, 764
AsuC2I CCSGG 1 cut(s) 683
AsuHPI GGTGA 2 cut(s) 56, 292
AvaII GGWCC 3 cut(s) 117, 377, 764
BaeGI GKGCMC 1 cut(s) 494
BanII GRGCYC 2 cut(s) 394, 494
Bbv12I GWGCWC 1 cut(s) 394
BbvCI CCTCAGC 1 cut(s) 59
BccI CCATC 4 cut(s) 111, 344, 465, 526
BciT130I CCWGG 3 cut(s) 341, 363, 693
BclI TGATCA 1 cut(s) 46
BcnI CCSGG 1 cut(s) 683
BcoDI GTCTC 2 cut(s) 30, 173
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
BmcAI AGTACT 1 cut(s) 612
Bme1390I CCNGG 4 cut(s) 341, 363, 683, 693
Bme18I GGWCC 3 cut(s) 117, 377, 764
BmgT120I GGNCC 7 cut(s) 82, 117, 315, 377, 490, 491, 764
BmiI GGNNCC 4 cut(s) 118, 378, 379, 492
BmrFI CCNGG 4 cut(s) 341, 363, 683, 693
BmsI GCATC 3 cut(s) 136, 259, 427
Bpu10I CCTNAGC 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 683
Bsa29I ATCGAT 1 cut(s) 172
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 362, 562
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 113, 386
BseBI CCWGG 3 cut(s) 341, 363, 693
BseCI ATCGAT 1 cut(s) 172
BseDI CCNNGG 2 cut(s) 362, 562
BseGI GGATG 4 cut(s) 103, 476, 688, 705
BseLI CCNNNNNNNGG 3 cut(s) 94, 113, 386
BseMII CTCAG 1 cut(s) 50
BseRI GAGGAG 2 cut(s) 76, 191
BseSI GKGCMC 1 cut(s) 494
BshFI GGCC 4 cut(s) 84, 317, 361, 492
BshVI ATCGAT 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 394
BsiSI CCGG 1 cut(s) 683
BslFI GGGAC 3 cut(s) 130, 179, 363
BslI CCNNNNNNNGG 3 cut(s) 94, 113, 386
BsmAI GTCTC 2 cut(s) 30, 173
BsmBI CGTCTC 1 cut(s) 30
BsmFI GGGAC 3 cut(s) 130, 179, 363
BsnI GGCC 4 cut(s) 84, 317, 361, 492
Bso31I GGTCTC 1 cut(s) 173
Bsp120I GGGCCC 1 cut(s) 490
Bsp1286I GDGCHC 2 cut(s) 394, 494
Bsp143I GATC 1 cut(s) 46
Bsp19I CCATGG 1 cut(s) 562
BspACI CCGC 2 cut(s) 85, 650
BspANI GGCC 4 cut(s) 84, 317, 361, 492
BspCNI CTCAG 1 cut(s) 51
BspDI ATCGAT 1 cut(s) 172
BspHI TCATGA 1 cut(s) 204
BspLI GGNNCC 4 cut(s) 118, 378, 379, 492
BspQI GCTCTTC 1 cut(s) 120
BspTNI GGTCTC 1 cut(s) 173
BssECI CCNNGG 2 cut(s) 362, 562
BssMI GATC 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 562
Bst2UI CCWGG 3 cut(s) 341, 363, 693
Bst4CI ACNGT 2 cut(s) 31, 41
Bst6I CTCTTC 4 cut(s) 120, 270, 282, 746
BstDEI CTNAG 1 cut(s) 59
BstDSI CCRYGG 1 cut(s) 562
BstF5I GGATG 4 cut(s) 103, 476, 688, 705
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 2 cut(s) 30, 173
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstNI CCWGG 3 cut(s) 341, 363, 693
BstSCI CCNGG 4 cut(s) 339, 361, 681, 691
BstSLI GKGCMC 1 cut(s) 494
BstXI CCANNNNNNTGG 1 cut(s) 660
Bsu15I ATCGAT 1 cut(s) 172
BsuRI GGCC 4 cut(s) 84, 317, 361, 492
BsuTUI ATCGAT 1 cut(s) 172
BtgI CCRYGG 1 cut(s) 562
BtsCI GGATG 4 cut(s) 103, 476, 688, 705
CciI TCATGA 1 cut(s) 204
Cfr13I GGNCC 7 cut(s) 82, 117, 315, 377, 490, 491, 764
ClaI ATCGAT 1 cut(s) 172
Csp6I GTAC 4 cut(s) 100, 498, 510, 611
CviAII CATG 7 cut(s) 205, 234, 347, 382, 502, 563, 588
CviQI GTAC 4 cut(s) 100, 498, 510, 611
DdeI CTNAG 1 cut(s) 59
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Eam1104I CTCTTC 4 cut(s) 120, 270, 282, 746
EarI CTCTTC 4 cut(s) 120, 270, 282, 746
Ecl136II GAGCTC 1 cut(s) 392
Eco130I CCWWGG 1 cut(s) 562
Eco24I GRGCYC 2 cut(s) 394, 494
Eco31I GGTCTC 1 cut(s) 173
Eco32I GATATC 1 cut(s) 440
Eco47I GGWCC 3 cut(s) 117, 377, 764
Eco53kI GAGCTC 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 144
EcoICRI GAGCTC 1 cut(s) 392
EcoO109I RGGNCCY 3 cut(s) 117, 377, 490
EcoRI GAATTC 1 cut(s) 210
EcoRII CCWGG 3 cut(s) 339, 361, 691
EcoRV GATATC 1 cut(s) 440
EcoT14I CCWWGG 1 cut(s) 562
EcoT38I GRGCYC 2 cut(s) 394, 494
ErhI CCWWGG 1 cut(s) 562
Esp3I CGTCTC 1 cut(s) 30
FaeI CATG 7 cut(s) 208, 237, 350, 385, 505, 566, 591
FaqI GGGAC 3 cut(s) 130, 179, 363
FatI CATG 7 cut(s) 204, 233, 346, 381, 501, 562, 587
FauNDI CATATG 1 cut(s) 622
FbaI TGATCA 1 cut(s) 46
FblI GTMKAC 1 cut(s) 478
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 4 cut(s) 90, 483, 675, 712
FriOI GRGCYC 2 cut(s) 394, 494
Fsp4HI GCNGC 1 cut(s) 85
GluI GCNGC 1 cut(s) 85
HaeIII GGCC 4 cut(s) 84, 317, 361, 492
HapII CCGG 1 cut(s) 683
Hin1II CATG 7 cut(s) 208, 237, 350, 385, 505, 566, 591
HinfI GANTC 1 cut(s) 756
HpaII CCGG 1 cut(s) 683
HphI GGTGA 2 cut(s) 56, 292
Hpy166II GTNNAC 2 cut(s) 70, 479
Hpy188I TCNGA 4 cut(s) 124, 196, 456, 828
Hpy188III TCNNGA 3 cut(s) 107, 205, 633
Hpy8I GTNNAC 2 cut(s) 70, 479
HpyAV CCTTC 1 cut(s) 690
HpyCH4III ACNGT 2 cut(s) 31, 41
HpyCH4V TGCA 3 cut(s) 221, 272, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 1 cut(s) 59
Hsp92II CATG 7 cut(s) 208, 237, 350, 385, 505, 566, 591
KflI GGGWCCC 1 cut(s) 377
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 1 cut(s) 46
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 389
LweI GCATC 3 cut(s) 136, 259, 427
MaeIII GTNAC 2 cut(s) 238, 280
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 6 cut(s) 137, 155, 287, 299, 607, 763
MhlI GDGCHC 2 cut(s) 394, 494
MluCI AATT 6 cut(s) 15, 210, 322, 520, 768, 821
MmeI TCCRAC 1 cut(s) 742
MnlI CCTC 6 cut(s) 54, 130, 212, 271, 283, 481
MroXI GAANNNNTTC 2 cut(s) 129, 755
MseI TTAA 3 cut(s) 264, 321, 789
MslI CAYNNNNRTG 3 cut(s) 547, 567, 625
MspI CCGG 1 cut(s) 683
MspR9I CCNGG 4 cut(s) 341, 363, 683, 693
MvaI CCWGG 3 cut(s) 341, 363, 693
MwoI GCNNNNNNNGC 1 cut(s) 398
NciI CCSGG 1 cut(s) 683
NcoI CCATGG 1 cut(s) 562
NdeI CATATG 1 cut(s) 622
NdeII GATC 1 cut(s) 46
NlaIII CATG 7 cut(s) 208, 237, 350, 385, 505, 566, 591
NlaIV GGNNCC 4 cut(s) 118, 378, 379, 492
NmuCI GTSAC 2 cut(s) 238, 280
PagI TCATGA 1 cut(s) 204
PciSI GCTCTTC 1 cut(s) 120
PdmI GAANNNNTTC 2 cut(s) 129, 755
PfeI GAWTC 1 cut(s) 756
PflMI CCANNNNNTGG 1 cut(s) 113
PfoI TCCNGGA 1 cut(s) 691
PkrI GCNGC 1 cut(s) 86
PpuMI RGGWCCY 2 cut(s) 117, 377
PshBI ATTAAT 1 cut(s) 321
Psp124BI GAGCTC 1 cut(s) 394
Psp5II RGGWCCY 2 cut(s) 117, 377
Psp6I CCWGG 3 cut(s) 339, 361, 691
PspGI CCWGG 3 cut(s) 339, 361, 691
PspN4I GGNNCC 4 cut(s) 118, 378, 379, 492
PspOMI GGGCCC 1 cut(s) 490
PspPI GGNCC 7 cut(s) 82, 117, 315, 377, 490, 491, 764
PspPPI RGGWCCY 2 cut(s) 117, 377
RsaI GTAC 4 cut(s) 101, 499, 511, 612
RsaNI GTAC 4 cut(s) 100, 498, 510, 611
RseI CAYNNNNRTG 3 cut(s) 547, 567, 625
SacI GAGCTC 1 cut(s) 394
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 3 cut(s) 264, 321, 789
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 7 cut(s) 82, 117, 315, 377, 490, 491, 764
ScaI AGTACT 1 cut(s) 612
ScrFI CCNGG 4 cut(s) 341, 363, 683, 693
SduI GDGCHC 2 cut(s) 394, 494
SfaNI GCATC 3 cut(s) 136, 259, 427
SinI GGWCC 3 cut(s) 117, 377, 764
SmiMI CAYNNNNRTG 3 cut(s) 547, 567, 625
Sse9I AATT 6 cut(s) 15, 210, 322, 520, 768, 821
SsiI CCGC 2 cut(s) 85, 650
SstI GAGCTC 1 cut(s) 394
StyD4I CCNGG 4 cut(s) 339, 361, 681, 691
StyI CCWWGG 1 cut(s) 562
TaaI ACNGT 2 cut(s) 31, 41
TaqI TCGA 4 cut(s) 141, 151, 172, 715
TasI AATT 6 cut(s) 15, 210, 322, 520, 768, 821
TatI WGTACW 1 cut(s) 610
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 1 cut(s) 756
Tru1I TTAA 3 cut(s) 264, 321, 789
Tru9I TTAA 3 cut(s) 264, 321, 789
TseFI GTSAC 2 cut(s) 238, 280
Tsp45I GTSAC 2 cut(s) 238, 280
TspDTI ATGAA 4 cut(s) 400, 576, 639, 677
TspGWI ACGGA 1 cut(s) 204
Van91I CCANNNNNTGG 1 cut(s) 113
VpaK11BI GGWCC 3 cut(s) 117, 377, 764
VspI ATTAAT 1 cut(s) 321
XapI RAATTY 2 cut(s) 210, 821
XcmI CCANNNNNNNNNTGG 3 cut(s) 110, 347, 699
XmiI GTMKAC 1 cut(s) 478
XmnI GAANNNNTTC 2 cut(s) 129, 755
ZrmI AGTACT 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.