AT5G18650

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009916
Physical Location & Seq
Forward (+)
6217690 .. 6220702
3013 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G18650.1

Sequence Viewer

Length: 804 bp
ATGGAAGCTTCACCCAATGATCGACTTCATTTTGGCAAAATGGGTTTCGGGTGTAAGCATTACAAGAGGAGATGCCAAATCAGAGCTCCATGTTGCAACGAAGTCTTCGATTGTCGCCATTGTCACAACGAGAGCACTAGCACATTGCGCAATATCTACGACCGTCACGATCTTGTTCGTCAAGACGTTAAACAAGTGATTTGTTCTGTTTGCGATACAGAGCAGCCGGCAGCTCAAGTTTGTTCGAATTGTGGTGTCAACATGGGAGAATATTTTTGCAGCATCTGCATATTCTATGATGATGATACTGAAAAACAACAGTTTCATTGCGATGACTGTGGAATTTGCAGAGTTGGTGGGCGTGAGAATTTCTTCCATTGCAAGAAGTGTGGATCTTGTTATGCGGTTGGTCTGCGCAACAACCATCGCTGCGTTGAGAATTCAATGCGTCATCACTGTCCCATTTGTTACGAGTACCTTTTTGACTCTCTAAAGGACACAAATGTGATGAAATGCGGGCACACAATGCACGTAGAATGCTACAACGAGATGATCAAACGTGACAAGTTTTGTTGTCCAATTTGCTCGAGGTCAGTGATTGATATGTCTAAAACATGGCAGAGACTCGATGAAGAGATCGAAGCCACTGCTATGCCTTCAGATTACCGTGACAAGAAGGTTTGGATACTTTGCAACGATTGTAACGACACAACAGAAGTGCACTTCCACATAATCGGACAGAAATGTGGACATTGCAGATCATACAACACACGAGCGATTGCGCCTCCTGTTCTTCCTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000731 GO:0002039 GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031347 GO:0031348 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032102 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0090304 GO:0140096 GO:1900424 GO:1900425 GO:1901360 GO:1901362 GO:1901483 GO:1901485 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-C3HC4 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

267

Amino Acids

30.98

Weight (kDa)

6.9

Isoelectric Point (pI)

56.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CHY PF05495 18 - 91 3.1e-20 CHY zinc finger
zf-RING_2 PF13639 152 - 195 2.7e-06 Ring finger domain
zf-C3HC4 PF00097 153 - 195 3.6e-06 Zinc finger, C3HC4 type (RING finger)
zinc_ribbon_6 PF14599 200 - 258 6.2e-28 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 149, 416
AciI CCGC 2 cut(s) 404, 516
AclWI GGATC 1 cut(s) 400
AcsI RAATTY 3 cut(s) 342, 367, 439
AcuI CTGAAG 1 cut(s) 642
AfaI GTAC 1 cut(s) 476
AgsI TTSAA 1 cut(s) 444
AleI CACNNNNGTG 1 cut(s) 503
AluBI AGCT 3 cut(s) 8, 86, 233
AluI AGCT 3 cut(s) 8, 86, 233
Alw21I GWGCWC 3 cut(s) 88, 137, 723
Alw26I GTCTC 1 cut(s) 616
Alw44I GTGCAC 1 cut(s) 719
AlwI GGATC 1 cut(s) 400
AlwNI CAGNNNCTG 1 cut(s) 285
Ama87I CYCGRG 1 cut(s) 586
ApaLI GTGCAC 1 cut(s) 719
ApeKI GCWGC 4 cut(s) 223, 230, 279, 429
ApoI RAATTY 3 cut(s) 342, 367, 439
Asp700I GAANNNNTTC 1 cut(s) 371
AspLEI GCGC 3 cut(s) 150, 417, 784
AsuHPI GGTGA 1 cut(s) 3
AsuII TTCGAA 1 cut(s) 245
AvaI CYCGRG 1 cut(s) 586
BaeGI GKGCMC 2 cut(s) 522, 723
BanII GRGCYC 1 cut(s) 88
BauI CACGAG 1 cut(s) 771
BbsI GAAGAC 1 cut(s) 97
Bbv12I GWGCWC 3 cut(s) 88, 137, 723
BbvI GCAGC 4 cut(s) 235, 242, 291, 416
BccI CCATC 1 cut(s) 432
BcgI CGANNNNNNTGC 2 cut(s) 629, 663
BciVI GTATCC 1 cut(s) 678
BclI TGATCA 1 cut(s) 552
BcoDI GTCTC 1 cut(s) 616
BfaI CTAG 1 cut(s) 138
BfuI GTATCC 1 cut(s) 678
BisI GCNGC 4 cut(s) 224, 231, 280, 430
BlsI GCNGC 4 cut(s) 225, 232, 281, 431
BmeT110I CYCGRG 1 cut(s) 586
BmsI GCATC 2 cut(s) 62, 291
BpiI GAAGAC 1 cut(s) 97
Bpu14I TTCGAA 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 219
BsaAI YACGTR 1 cut(s) 532
Bse118I RCCGGY 1 cut(s) 226
Bse3DI GCAATG 4 cut(s) 143, 325, 376, 751
BseMI GCAATG 4 cut(s) 143, 325, 376, 751
BseRI GAGGAG 1 cut(s) 82
BseSI GKGCMC 2 cut(s) 522, 723
BseXI GCAGC 4 cut(s) 235, 242, 291, 416
Bsh1285I CGRYCG 1 cut(s) 163
BsiEI CGRYCG 1 cut(s) 163
BsiHKAI GWGCWC 3 cut(s) 88, 137, 723
BsiHKCI CYCGRG 1 cut(s) 586
BsiSI CCGG 1 cut(s) 227
BslFI GGGAC 1 cut(s) 444
BsmAI GTCTC 1 cut(s) 616
BsmFI GGGAC 1 cut(s) 444
BsmI GAATGC 1 cut(s) 542
BsoBI CYCGRG 1 cut(s) 586
Bsp119I TTCGAA 1 cut(s) 245
Bsp1286I GDGCHC 4 cut(s) 88, 137, 522, 723
Bsp143I GATC 6 cut(s) 19, 169, 392, 552, 636, 758
BspACI CCGC 2 cut(s) 404, 516
BspPI GGATC 1 cut(s) 400
BspT104I TTCGAA 1 cut(s) 245
BsrDI GCAATG 4 cut(s) 143, 325, 376, 751
BsrFI RCCGGY 1 cut(s) 226
BssAI RCCGGY 1 cut(s) 226
BssMI GATC 6 cut(s) 19, 169, 392, 552, 636, 758
BssSI CACGAG 1 cut(s) 771
Bst2BI CACGAG 1 cut(s) 771
Bst4CI ACNGT 5 cut(s) 164, 321, 338, 458, 668
Bst6I CTCTTC 1 cut(s) 627
BstAPI GCANNNNNTGC 2 cut(s) 285, 526
BstBAI YACGTR 1 cut(s) 532
BstBI TTCGAA 1 cut(s) 245
BstC8I GCNNGC 2 cut(s) 228, 518
BstHHI GCGC 3 cut(s) 150, 417, 784
BstKTI GATC 6 cut(s) 22, 172, 395, 555, 639, 761
BstMAI GTCTC 1 cut(s) 616
BstMBI GATC 6 cut(s) 19, 169, 392, 552, 636, 758
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 3 cut(s) 147, 285, 526
BstSLI GKGCMC 2 cut(s) 522, 723
BstV1I GCAGC 4 cut(s) 235, 242, 291, 416
BstV2I GAAGAC 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 392
BstYI RGATCY 1 cut(s) 392
BsuI GTATCC 1 cut(s) 678
BtgZI GCGATG 2 cut(s) 345, 410
BtsI GCAGTG 1 cut(s) 645
BtsIMutI CAGTG 3 cut(s) 454, 600, 645
Cac8I GCNNGC 2 cut(s) 228, 518
CaiI CAGNNNCTG 1 cut(s) 285
CfoI GCGC 3 cut(s) 150, 417, 784
Cfr10I RCCGGY 1 cut(s) 226
CseI GACGC 1 cut(s) 437
Csp6I GTAC 1 cut(s) 475
CspCI CAANNNNNGTGG 2 cut(s) 370, 405
CviAII CATG 3 cut(s) 90, 262, 615
CviJI RGCY 5 cut(s) 8, 86, 226, 233, 644
CviKI_1 RGCY 5 cut(s) 8, 86, 226, 233, 644
CviQI GTAC 1 cut(s) 475
DpnI GATC 6 cut(s) 21, 171, 394, 554, 638, 760
DpnII GATC 6 cut(s) 19, 169, 392, 552, 636, 758
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
Ecl136II GAGCTC 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 88
Eco53kI GAGCTC 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 642
Eco88I CYCGRG 1 cut(s) 586
EcoICRI GAGCTC 1 cut(s) 86
EcoRI GAATTC 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 88
FaeI CATG 3 cut(s) 93, 265, 618
FaqI GGGAC 1 cut(s) 444
FatI CATG 3 cut(s) 89, 261, 614
FauI CCCGC 1 cut(s) 509
FbaI TGATCA 1 cut(s) 552
Fnu4HI GCNGC 4 cut(s) 224, 231, 280, 430
FriOI GRGCYC 1 cut(s) 88
Fsp4HI GCNGC 4 cut(s) 224, 231, 280, 430
FspBI CTAG 1 cut(s) 138
FspI TGCGCA 2 cut(s) 149, 416
GlaI GCGC 3 cut(s) 149, 416, 783
GluI GCNGC 4 cut(s) 224, 231, 280, 430
HapII CCGG 1 cut(s) 227
HgaI GACGC 1 cut(s) 437
HhaI GCGC 3 cut(s) 150, 417, 784
Hin1II CATG 3 cut(s) 93, 265, 618
Hin6I GCGC 3 cut(s) 148, 415, 782
HinP1I GCGC 3 cut(s) 148, 415, 782
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 2 cut(s) 485, 624
HpaII CCGG 1 cut(s) 227
HphI GGTGA 1 cut(s) 3
Hpy166II GTNNAC 3 cut(s) 259, 721, 749
Hpy188I TCNGA 3 cut(s) 83, 661, 737
Hpy188III TCNNGA 2 cut(s) 167, 182
Hpy8I GTNNAC 3 cut(s) 259, 721, 749
HpyAV CCTTC 2 cut(s) 666, 670
HpyCH4III ACNGT 5 cut(s) 164, 321, 338, 458, 668
HpyCH4IV ACGT 3 cut(s) 186, 531, 559
HpyCH4V TGCA 9 cut(s) 96, 279, 288, 348, 381, 529, 693, 721, 756
HpyF10VI GCNNNNNNNGC 3 cut(s) 147, 285, 526
HpySE526I ACGT 3 cut(s) 186, 531, 559
Hsp92II CATG 3 cut(s) 93, 265, 618
HspAI GCGC 3 cut(s) 148, 415, 782
KroI GCCGGC 1 cut(s) 226
KroNI GCCGGC 1 cut(s) 228
Ksp22I TGATCA 1 cut(s) 552
Kzo9I GATC 6 cut(s) 19, 169, 392, 552, 636, 758
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 1 cut(s) 240
Lsp1109I GCAGC 4 cut(s) 235, 242, 291, 416
LweI GCATC 2 cut(s) 62, 291
MaeI CTAG 1 cut(s) 138
MaeII ACGT 3 cut(s) 186, 531, 559
MaeIII GTNAC 6 cut(s) 122, 164, 467, 560, 668, 701
MalI GATC 6 cut(s) 21, 171, 394, 554, 638, 760
MboI GATC 6 cut(s) 19, 169, 392, 552, 636, 758
MboII GAAGA 4 cut(s) 97, 364, 644, 785
MflI RGATCY 1 cut(s) 392
MhlI GDGCHC 4 cut(s) 88, 137, 522, 723
MluCI AATT 5 cut(s) 247, 342, 367, 439, 579
MlyI GAGTC 2 cut(s) 479, 618
MnlI CCTC 3 cut(s) 60, 582, 795
MroNI GCCGGC 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 371
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 3 cut(s) 330, 503, 650
MspI CCGG 1 cut(s) 227
Mva1269I GAATGC 1 cut(s) 542
MwoI GCNNNNNNNGC 3 cut(s) 147, 285, 526
NaeI GCCGGC 1 cut(s) 228
NdeII GATC 6 cut(s) 19, 169, 392, 552, 636, 758
NgoMIV GCCGGC 1 cut(s) 226
NlaIII CATG 3 cut(s) 93, 265, 618
NmuCI GTSAC 4 cut(s) 122, 164, 560, 668
NsbI TGCGCA 2 cut(s) 149, 416
NspV TTCGAA 1 cut(s) 245
OliI CACNNNNGTG 1 cut(s) 503
PaeR7I CTCGAG 1 cut(s) 586
PcsI WCGNNNNNNNCGW 3 cut(s) 105, 165, 702
PctI GAATGC 1 cut(s) 542
PdiI GCCGGC 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 371
PkrI GCNGC 4 cut(s) 225, 232, 281, 431
PleI GAGTC 2 cut(s) 479, 618
PpsI GAGTC 2 cut(s) 479, 618
Ppu21I YACGTR 1 cut(s) 532
Psp124BI GAGCTC 1 cut(s) 88
PspXI VCTCGAGB 1 cut(s) 586
PstNI CAGNNNCTG 1 cut(s) 285
PsuI RGATCY 1 cut(s) 392
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
RseI CAYNNNNRTG 3 cut(s) 330, 503, 650
SacI GAGCTC 1 cut(s) 88
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 4 cut(s) 224, 231, 280, 430
Sau3AI GATC 6 cut(s) 19, 169, 392, 552, 636, 758
SchI GAGTC 2 cut(s) 479, 618
SduI GDGCHC 4 cut(s) 88, 137, 522, 723
SetI ASST 9 cut(s) 10, 88, 189, 235, 480, 534, 562, 593, 681
SfaNI GCATC 2 cut(s) 62, 291
Sfr274I CTCGAG 1 cut(s) 586
SfuI TTCGAA 1 cut(s) 245
SlaI CTCGAG 1 cut(s) 586
SmiMI CAYNNNNRTG 3 cut(s) 330, 503, 650
SmlI CTYRAG 2 cut(s) 234, 586
SmoI CTYRAG 2 cut(s) 234, 586
Sse9I AATT 5 cut(s) 247, 342, 367, 439, 579
SsiI CCGC 2 cut(s) 404, 516
SspI AATATT 1 cut(s) 272
SspMI CTAG 1 cut(s) 138
SstI GAGCTC 1 cut(s) 88
TaaI ACNGT 5 cut(s) 164, 321, 338, 458, 668
TaiI ACGT 3 cut(s) 189, 534, 562
TaqI TCGA 6 cut(s) 22, 108, 245, 587, 627, 639
TasI AATT 5 cut(s) 247, 342, 367, 439, 579
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 3 cut(s) 461, 600, 652
TseFI GTSAC 4 cut(s) 122, 164, 560, 668
TseI GCWGC 4 cut(s) 223, 230, 279, 429
Tsp45I GTSAC 4 cut(s) 122, 164, 560, 668
TspDTI ATGAA 4 cut(s) 17, 314, 524, 645
TspRI CASTG 3 cut(s) 461, 600, 652
VneI GTGCAC 1 cut(s) 719
XapI RAATTY 3 cut(s) 342, 367, 439
XhoI CTCGAG 1 cut(s) 586
XmnI GAANNNNTTC 1 cut(s) 371
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.