Rh4AG230500

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0009916
Physical Location & Seq
Reverse (-)
53347143 .. 53351591
4449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG230500.1

Sequence Viewer

Length: 570 bp
ATGGAAGGCTCAGGCAATGAACGTCCCAGTTTTGGGAAGATGGGTTACGGATGCAAGCATTACAGAAGGAGATGCCAGATTCGAGCTCCGTGTTGCAACGAGATCTACCCATGTCGCCATTGTCACAATGAAGCCACGAGCATGTTGAGCAACCCCTTTGATCGGCATGAGCTCGTTCGCCACGATGTTAAACAGGTTGTTTGTTCAGTCTGTGACACAGAGCAGCCGGTGGCTCAAGTTTGTACTAACTGCGGCATTAGTATGGGGGAATATTTCTGTGATATTTGCAAGTTCTATGATGATGATACAGAGAAAGGGCAATTTCACTGTCATGATTGTGGGATCTGCAGAATCGGTGGTCGTGAAAATTTTTATCACTGCAAGAAGTGTGGGTCTTGCTATTCGATTGGCTTGCGTGATAATCACCTGTGTGTAGAGAACTCCATGCGTCACCACTGCCCCATTTGTTACGAGTTCCTTTTTGACTCGTTGAAAGACACTACTGTATTGAAATGTGGGCACACAATGCATTGTGAATGTTACAACGAAATGATAAAGCGTGATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000731 GO:0002039 GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031347 GO:0031348 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032102 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0090304 GO:0140096 GO:1900424 GO:1900425 GO:1901360 GO:1901362 GO:1901483 GO:1901485 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-C3HC4 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

189

Amino Acids

21.88

Weight (kDa)

6.85

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CHY PF05495 18 - 91 2.6e-21 CHY zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 252
AclWI GGATC 1 cut(s) 350
AcsI RAATTY 1 cut(s) 367
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 3 cut(s) 32, 33, 162
AgsI TTSAA 2 cut(s) 493, 511
AleI CACNNNNGTG 1 cut(s) 429
AluBI AGCT 2 cut(s) 86, 172
AluI AGCT 2 cut(s) 86, 172
Alw21I GWGCWC 2 cut(s) 88, 174
AlwI GGATC 1 cut(s) 350
ApeKI GCWGC 1 cut(s) 223
ApoI RAATTY 1 cut(s) 367
AsuHPI GGTGA 2 cut(s) 416, 443
BaeGI GKGCMC 1 cut(s) 522
BanII GRGCYC 2 cut(s) 88, 174
BarI GAAGNNNNNNTAC 2 cut(s) 29, 61
BauI CACGAG 1 cut(s) 136
Bbv12I GWGCWC 2 cut(s) 88, 174
BbvI GCAGC 1 cut(s) 235
BccI CCATC 1 cut(s) 34
BcgI CGANNNNNNTGC 2 cut(s) 394, 428
BfmI CTRYAG 1 cut(s) 346
BglII AGATCT 1 cut(s) 102
BisI GCNGC 2 cut(s) 224, 253
BlsI GCNGC 2 cut(s) 225, 254
BmrI ACTGGG 1 cut(s) 21
BmsI GCATC 2 cut(s) 41, 62
BmuI ACTGGG 1 cut(s) 21
Bpu10I CCTNAGC 1 cut(s) 10
BpuEI CTTGAG 1 cut(s) 219
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 33, 162
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 27
Bse3DI GCAATG 1 cut(s) 22
BseGI GGATG 1 cut(s) 56
BseLI CCNNNNNNNGG 3 cut(s) 32, 33, 162
BseMI GCAATG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 27
BseSI GKGCMC 1 cut(s) 522
BseXI GCAGC 1 cut(s) 235
BsiHKAI GWGCWC 2 cut(s) 88, 174
BsiSI CCGG 1 cut(s) 227
BslFI GGGAC 1 cut(s) 9
BslI CCNNNNNNNGG 3 cut(s) 32, 33, 162
BsmFI GGGAC 1 cut(s) 9
Bsp1286I GDGCHC 3 cut(s) 88, 174, 522
Bsp143I GATC 3 cut(s) 102, 160, 342
BspACI CCGC 1 cut(s) 252
BspCNI CTCAG 1 cut(s) 23
BspHI TCATGA 1 cut(s) 331
BspMAI CTGCAG 1 cut(s) 350
BspPI GGATC 1 cut(s) 350
BsrDI GCAATG 1 cut(s) 22
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 226
BssMI GATC 3 cut(s) 102, 160, 342
BssSI CACGAG 1 cut(s) 136
Bst2BI CACGAG 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 329, 505
BstAPI GCANNNNNTGC 1 cut(s) 526
BstC8I GCNNGC 2 cut(s) 56, 413
BstDEI CTNAG 1 cut(s) 10
BstF5I GGATG 1 cut(s) 56
BstKTI GATC 3 cut(s) 105, 163, 345
BstMBI GATC 3 cut(s) 102, 160, 342
BstMWI GCNNNNNNNGC 2 cut(s) 147, 526
BstNSI RCATGY 1 cut(s) 145
BstSFI CTRYAG 1 cut(s) 346
BstSLI GKGCMC 1 cut(s) 522
BstV1I GCAGC 1 cut(s) 235
BstX2I RGATCY 2 cut(s) 102, 342
BstYI RGATCY 2 cut(s) 102, 342
BtsCI GGATG 1 cut(s) 56
BtsI GCAGTG 2 cut(s) 376, 454
BtsIMutI CAGTG 3 cut(s) 325, 376, 454
Cac8I GCNNGC 2 cut(s) 56, 413
CciI TCATGA 1 cut(s) 331
Cfr10I RCCGGY 1 cut(s) 226
CseI GACGC 1 cut(s) 437
Csp6I GTAC 1 cut(s) 243
CspCI CAANNNNNGTGG 2 cut(s) 370, 405
CviAII CATG 5 cut(s) 111, 142, 167, 332, 445
CviJI RGCY 7 cut(s) 9, 86, 134, 172, 226, 233, 411
CviKI_1 RGCY 7 cut(s) 9, 86, 134, 172, 226, 233, 411
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 1 cut(s) 10
DpnI GATC 3 cut(s) 104, 162, 344
DpnII GATC 3 cut(s) 102, 160, 342
Ecl136II GAGCTC 2 cut(s) 86, 172
Eco24I GRGCYC 2 cut(s) 88, 174
Eco53kI GAGCTC 2 cut(s) 86, 172
EcoICRI GAGCTC 2 cut(s) 86, 172
EcoT22I ATGCAT 1 cut(s) 531
EcoT38I GRGCYC 2 cut(s) 88, 174
FaeI CATG 5 cut(s) 114, 145, 170, 335, 448
FaiI YATR 7 cut(s) 112, 143, 168, 263, 297, 333, 446
FaqI GGGAC 1 cut(s) 9
FatI CATG 5 cut(s) 110, 141, 166, 331, 444
Fnu4HI GCNGC 2 cut(s) 224, 253
FokI GGATG 1 cut(s) 63
FriOI GRGCYC 2 cut(s) 88, 174
Fsp4HI GCNGC 2 cut(s) 224, 253
GluI GCNGC 2 cut(s) 224, 253
HapII CCGG 1 cut(s) 227
HgaI GACGC 1 cut(s) 437
Hin1II CATG 5 cut(s) 114, 145, 170, 335, 448
HinfI GANTC 3 cut(s) 79, 351, 485
HpaII CCGG 1 cut(s) 227
HphI GGTGA 2 cut(s) 416, 443
Hpy188III TCNNGA 2 cut(s) 332, 362
HpyAV CCTTC 1 cut(s) 60
HpyCH4III ACNGT 2 cut(s) 329, 505
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 6 cut(s) 54, 96, 288, 348, 381, 529
HpyF10VI GCNNNNNNNGC 2 cut(s) 147, 526
HpyF3I CTNAG 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 22
Hsp92II CATG 5 cut(s) 114, 145, 170, 335, 448
Kzo9I GATC 3 cut(s) 102, 160, 342
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 5 cut(s) 40, 89, 179, 240, 440
Lsp1109I GCAGC 1 cut(s) 235
LweI GCATC 2 cut(s) 41, 62
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 6 cut(s) 44, 122, 212, 449, 467, 539
MalI GATC 3 cut(s) 104, 162, 344
MboI GATC 3 cut(s) 102, 160, 342
MboII GAAGA 1 cut(s) 49
MflI RGATCY 2 cut(s) 102, 342
MhlI GDGCHC 3 cut(s) 88, 174, 522
MluCI AATT 2 cut(s) 320, 367
MlyI GAGTC 1 cut(s) 479
Mph1103I ATGCAT 1 cut(s) 531
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 5 cut(s) 140, 260, 330, 336, 429
MspI CCGG 1 cut(s) 227
MwoI GCNNNNNNNGC 2 cut(s) 147, 526
NdeII GATC 3 cut(s) 102, 160, 342
NlaIII CATG 5 cut(s) 114, 145, 170, 335, 448
NmuCI GTSAC 3 cut(s) 122, 212, 449
NsiI ATGCAT 1 cut(s) 531
NspI RCATGY 1 cut(s) 145
OliI CACNNNNGTG 1 cut(s) 429
PagI TCATGA 1 cut(s) 331
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PfeI GAWTC 2 cut(s) 79, 351
PkrI GCNGC 2 cut(s) 225, 254
PleI GAGTC 1 cut(s) 479
PpsI GAGTC 1 cut(s) 479
Psp124BI GAGCTC 2 cut(s) 88, 174
PstI CTGCAG 1 cut(s) 350
PsuI RGATCY 2 cut(s) 102, 342
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
RseI CAYNNNNRTG 5 cut(s) 140, 260, 330, 336, 429
SacI GAGCTC 2 cut(s) 88, 174
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 2 cut(s) 224, 253
Sau3AI GATC 3 cut(s) 102, 160, 342
SchI GAGTC 1 cut(s) 479
SduI GDGCHC 3 cut(s) 88, 174, 522
SetI ASST 5 cut(s) 25, 88, 174, 198, 429
SfaNI GCATC 2 cut(s) 41, 62
SfcI CTRYAG 1 cut(s) 346
SmiMI CAYNNNNRTG 5 cut(s) 140, 260, 330, 336, 429
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 2 cut(s) 320, 367
SsiI CCGC 1 cut(s) 252
SspI AATATT 1 cut(s) 272
SstI GAGCTC 2 cut(s) 88, 174
TaaI ACNGT 2 cut(s) 329, 505
TaiI ACGT 1 cut(s) 25
TaqI TCGA 2 cut(s) 82, 404
TasI AATT 2 cut(s) 320, 367
TatI WGTACW 1 cut(s) 242
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 2 cut(s) 79, 351
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 3 cut(s) 332, 383, 461
TseFI GTSAC 3 cut(s) 122, 212, 449
TseI GCWGC 1 cut(s) 223
Tsp45I GTSAC 3 cut(s) 122, 212, 449
TspDTI ATGAA 2 cut(s) 33, 144
TspGWI ACGGA 2 cut(s) 63, 78
TspRI CASTG 3 cut(s) 332, 383, 461
XapI RAATTY 1 cut(s) 367
XceI RCATGY 1 cut(s) 145
Zsp2I ATGCAT 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.