Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0009916

Physical Location & Seq

Genomic Coordinates Reverse (-)

49302344 .. 49306065

Gene Structure 3722 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG244700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGAAGGCTCAGGCAATGAACGTCCCAGTTTTGGGAAGATGGGTTACGGATGCAAGCATTACAGAAGGAGATGCCAGATTCGAGCTCCGTGTTGCAACGAGATCTACCCATGTCGCCATTGTCACAATGAAGCCACGAGCATGTTGAGCAACCCCTTTGATCGGCATGAGCTCGTTCGCCACGATGTTAAACAGGTTGTTTGTTCTGTCTGTGACACAGAGCAGCCGGTGGCTCAAGTTTGTACTAACTGCGGCGTTAGTATGGGGGAATATTTCTGTGATATTTGCAAGTTCTATGATGATGATACAGAGAAAGGGCAATTTCACTGTCATGATTGTGGGATCTGCAGAATCGGTGGTCGTGAAAATTTTTATCACTGCAAGAAGTGTGGGTCTTGCTATTCGATTGGCTTGCGTGGTAATCACCTGTGTGTAGAGAACTCCATGCGGCACCACTGCCCCATTTGTTACGAGTTCCTTTTTGACTCGCTGAAAGACACTACTGTATTGAAATGTGGGCACACAATGCATTGTGAATGTTACAACGAAATGATAAAGCGGGACAAATATTGTTGTCCAATATGCTCCAAGTCAGTGATTGACATGTCTAGAACATGGAAGAGAATAGATGAAGAGGTAGGCTTATCGAATTTAACTGCAAAATATTGTGGAAAATTGCAGTTAACTTATAGATTGGATCAAATATTTCTTGTGTCATTTGAATTTTCCGGTTACATGATATTAATGATGATTCCGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000731 GO:0002039 GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031347 GO:0031348 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032102 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0090304 GO:0140096 GO:1900424 GO:1900425 GO:1901360 GO:1901362 GO:1901483 GO:1901485 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko05162 map04115 map04120 map05162

Pfam Domains

Protein Families

zf-C3HC4 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

253

Amino Acids

29.31

Weight (kDa)

7.41

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CHY	PF05495	18 - 91	3.5e-21	CHY zinc finger
zf-RING_2	PF13639	152 - 195	3.4e-06	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18650
fragaria_vesca	FvH4_4g17350
malus_domestica	MD13G1172900.v1.1 MD16G1174300.v1.1
prunus_persica	Prupe.1G141000_v2.0.a1 Prupe.1G141000_v2.0.a1 Prupe.1G141000_v2.0.a1
pyrus_communis	pycom13g14840 pycom16g14590
rosa_chinensis	RchiOBHm_Chr4g0421291
rosa_laevigata	RLG00000007700
rosa_multiflora	Rmu_sc0004892.1_g000003 Rmu_sc0007721.1_g000004
rosa_roxburghii	Rroxscaffold_5G00363520
rosa_rugosa	Rorug04G0169400
rosa_samantha	Rh4AG230500 Rh4BG229900 Rh4BG233500 Rh4CG244700 Rh4DG229200
rosa_wichuraiana	Rw4G020330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	450
AciI	CCGC	3 cut(s)	252, 448, 559
AclWI	GGATC	2 cut(s)	350, 705
AcsI	RAATTY	3 cut(s)	367, 649, 722
AfaI	GTAC	2 cut(s)	244, 758
AfiI	CCNNNNNNNGG	3 cut(s)	32, 33, 162
AflIII	ACRYGT	1 cut(s)	603
AgsI	TTSAA	2 cut(s)	511, 722
AleI	CACNNNNGTG	1 cut(s)	429
AluBI	AGCT	2 cut(s)	86, 172
AluI	AGCT	2 cut(s)	86, 172
Alw21I	GWGCWC	2 cut(s)	88, 174
AlwI	GGATC	2 cut(s)	350, 705
ApeKI	GCWGC	1 cut(s)	223
ApoI	RAATTY	3 cut(s)	367, 649, 722
AseI	ATTAAT	1 cut(s)	743
AsuHPI	GGTGA	1 cut(s)	416
BaeGI	GKGCMC	1 cut(s)	522
BanI	GGYRCC	1 cut(s)	450
BanII	GRGCYC	2 cut(s)	88, 174
BarI	GAAGNNNNNNTAC	2 cut(s)	29, 61
BauI	CACGAG	1 cut(s)	136
Bbv12I	GWGCWC	2 cut(s)	88, 174
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	1 cut(s)	34
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BfaI	CTAG	1 cut(s)	609
BfmI	CTRYAG	1 cut(s)	346
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	3 cut(s)	224, 253, 449
BlsI	GCNGC	3 cut(s)	225, 254, 450
BmiI	GGNNCC	1 cut(s)	452
BmrI	ACTGGG	1 cut(s)	21
BmsI	GCATC	2 cut(s)	41, 62
BmuI	ACTGGG	1 cut(s)	21
Bpu10I	CCTNAGC	1 cut(s)	10
BpuEI	CTTGAG	1 cut(s)	219
BsaWI	WCCGGW	1 cut(s)	728
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 33, 162
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	22
BseGI	GGATG	1 cut(s)	56
BseLI	CCNNNNNNNGG	3 cut(s)	32, 33, 162
BseMI	GCAATG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	27
BseSI	GKGCMC	1 cut(s)	522
BseXI	GCAGC	1 cut(s)	235
BshNI	GGYRCC	1 cut(s)	450
BsiHKAI	GWGCWC	2 cut(s)	88, 174
BsiSI	CCGG	2 cut(s)	227, 729
BslFI	GGGAC	2 cut(s)	9, 575
BslI	CCNNNNNNNGG	3 cut(s)	32, 33, 162
BsmFI	GGGAC	2 cut(s)	9, 575
Bsp1286I	GDGCHC	3 cut(s)	88, 174, 522
Bsp143I	GATC	4 cut(s)	102, 160, 342, 697
BspACI	CCGC	3 cut(s)	252, 448, 559
BspCNI	CTCAG	1 cut(s)	23
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	452
BspMAI	CTGCAG	1 cut(s)	350
BspPI	GGATC	2 cut(s)	350, 705
BspT107I	GGYRCC	1 cut(s)	450
BsrDI	GCAATG	1 cut(s)	22
BsrFI	RCCGGY	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	27
BssAI	RCCGGY	1 cut(s)	226
BssMI	GATC	4 cut(s)	102, 160, 342, 697
BssSI	CACGAG	1 cut(s)	136
Bst2BI	CACGAG	1 cut(s)	136
Bst4CI	ACNGT	2 cut(s)	329, 505
Bst6I	CTCTTC	2 cut(s)	614, 627
BstAPI	GCANNNNNTGC	1 cut(s)	526
BstC8I	GCNNGC	2 cut(s)	56, 413
BstDEI	CTNAG	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	56
BstKTI	GATC	4 cut(s)	105, 163, 345, 700
BstMBI	GATC	4 cut(s)	102, 160, 342, 697
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 526
BstNSI	RCATGY	2 cut(s)	145, 607
BstSFI	CTRYAG	1 cut(s)	346
BstSLI	GKGCMC	1 cut(s)	522
BstV1I	GCAGC	1 cut(s)	235
BstX2I	RGATCY	2 cut(s)	102, 342
BstYI	RGATCY	2 cut(s)	102, 342
BtsCI	GGATG	1 cut(s)	56
BtsI	GCAGTG	2 cut(s)	376, 454
BtsIMutI	CAGTG	4 cut(s)	325, 376, 454, 600
Cac8I	GCNNGC	2 cut(s)	56, 413
CciI	TCATGA	1 cut(s)	331
Cfr10I	RCCGGY	1 cut(s)	226
Csp6I	GTAC	2 cut(s)	243, 757
CspCI	CAANNNNNGTGG	2 cut(s)	370, 405
CviAII	CATG	8 cut(s)	111, 142, 167, 332, 445, 604, 615, 736
CviJI	RGCY	8 cut(s)	9, 86, 134, 172, 226, 233, 411, 642
CviKI_1	RGCY	8 cut(s)	9, 86, 134, 172, 226, 233, 411, 642
CviQI	GTAC	2 cut(s)	243, 757
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	4 cut(s)	104, 162, 344, 699
DpnII	GATC	4 cut(s)	102, 160, 342, 697
Eam1104I	CTCTTC	2 cut(s)	614, 627
EarI	CTCTTC	2 cut(s)	614, 627
Ecl136II	GAGCTC	2 cut(s)	86, 172
Eco24I	GRGCYC	2 cut(s)	88, 174
Eco53kI	GAGCTC	2 cut(s)	86, 172
EcoICRI	GAGCTC	2 cut(s)	86, 172
EcoT22I	ATGCAT	1 cut(s)	531
EcoT38I	GRGCYC	2 cut(s)	88, 174
FaeI	CATG	8 cut(s)	114, 145, 170, 335, 448, 607, 618, 739
FaqI	GGGAC	2 cut(s)	9, 575
FatI	CATG	8 cut(s)	110, 141, 166, 331, 444, 603, 614, 735
FauI	CCCGC	1 cut(s)	552
Fnu4HI	GCNGC	3 cut(s)	224, 253, 449
FokI	GGATG	1 cut(s)	63
FriOI	GRGCYC	2 cut(s)	88, 174
Fsp4HI	GCNGC	3 cut(s)	224, 253, 449
FspBI	CTAG	1 cut(s)	609
GluI	GCNGC	3 cut(s)	224, 253, 449
HapII	CCGG	2 cut(s)	227, 729
Hin1II	CATG	8 cut(s)	114, 145, 170, 335, 448, 607, 618, 739
HincII	GTYRAC	1 cut(s)	684
HindII	GTYRAC	1 cut(s)	684
HinfI	GANTC	4 cut(s)	79, 351, 485, 751
HpaI	GTTAAC	1 cut(s)	684
HpaII	CCGG	2 cut(s)	227, 729
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	684
Hpy188III	TCNNGA	3 cut(s)	332, 362, 609
Hpy8I	GTNNAC	1 cut(s)	684
HpyAV	CCTTC	1 cut(s)	60
HpyCH4III	ACNGT	2 cut(s)	329, 505
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	8 cut(s)	54, 96, 288, 348, 381, 529, 659, 679
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 526
HpyF3I	CTNAG	1 cut(s)	10
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	8 cut(s)	114, 145, 170, 335, 448, 607, 618, 739
KspAI	GTTAAC	1 cut(s)	684
Kzo9I	GATC	4 cut(s)	102, 160, 342, 697
LmnI	GCTCC	2 cut(s)	91, 590
LpnPI	CCDG	6 cut(s)	40, 89, 179, 240, 440, 742
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	2 cut(s)	41, 62
MaeI	CTAG	1 cut(s)	609
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	6 cut(s)	44, 122, 212, 467, 539, 731
MalI	GATC	4 cut(s)	104, 162, 344, 699
MboI	GATC	4 cut(s)	102, 160, 342, 697
MboII	GAAGA	3 cut(s)	49, 631, 644
MflI	RGATCY	2 cut(s)	102, 342
MhlI	GDGCHC	3 cut(s)	88, 174, 522
MluCI	AATT	5 cut(s)	320, 367, 649, 674, 722
MlyI	GAGTC	1 cut(s)	479
MnlI	CCTC	1 cut(s)	628
Mph1103I	ATGCAT	1 cut(s)	531
MseI	TTAA	4 cut(s)	189, 653, 683, 743
MslI	CAYNNNNRTG	4 cut(s)	140, 330, 336, 429
MspI	CCGG	2 cut(s)	227, 729
MwoI	GCNNNNNNNGC	2 cut(s)	147, 526
NdeII	GATC	4 cut(s)	102, 160, 342, 697
NlaIII	CATG	8 cut(s)	114, 145, 170, 335, 448, 607, 618, 739
NlaIV	GGNNCC	1 cut(s)	452
NmuCI	GTSAC	2 cut(s)	122, 212
NsiI	ATGCAT	1 cut(s)	531
NspI	RCATGY	2 cut(s)	145, 607
OliI	CACNNNNGTG	1 cut(s)	429
PagI	TCATGA	1 cut(s)	331
PciI	ACATGT	1 cut(s)	603
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PfeI	GAWTC	3 cut(s)	79, 351, 751
PkrI	GCNGC	3 cut(s)	225, 254, 450
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
PscI	ACATGT	1 cut(s)	603
PshBI	ATTAAT	1 cut(s)	743
Psp124BI	GAGCTC	2 cut(s)	88, 174
PspN4I	GGNNCC	1 cut(s)	452
PstI	CTGCAG	1 cut(s)	350
PsuI	RGATCY	2 cut(s)	102, 342
RsaI	GTAC	2 cut(s)	244, 758
RsaNI	GTAC	2 cut(s)	243, 757
RseI	CAYNNNNRTG	4 cut(s)	140, 330, 336, 429
SacI	GAGCTC	2 cut(s)	88, 174
SaqAI	TTAA	4 cut(s)	189, 653, 683, 743
SatI	GCNGC	3 cut(s)	224, 253, 449
Sau3AI	GATC	4 cut(s)	102, 160, 342, 697
SchI	GAGTC	1 cut(s)	479
SduI	GDGCHC	3 cut(s)	88, 174, 522
SetI	ASST	6 cut(s)	25, 88, 174, 198, 429, 639
SfaNI	GCATC	2 cut(s)	41, 62
SfcI	CTRYAG	1 cut(s)	346
SmiMI	CAYNNNNRTG	4 cut(s)	140, 330, 336, 429
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
Sse9I	AATT	5 cut(s)	320, 367, 649, 674, 722
SsiI	CCGC	3 cut(s)	252, 448, 559
SspI	AATATT	4 cut(s)	272, 569, 665, 705
SspMI	CTAG	1 cut(s)	609
SstI	GAGCTC	2 cut(s)	88, 174
TaaI	ACNGT	2 cut(s)	329, 505
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	3 cut(s)	82, 404, 647
TasI	AATT	5 cut(s)	320, 367, 649, 674, 722
TatI	WGTACW	1 cut(s)	242
TauI	GCSGC	2 cut(s)	255, 451
TfiI	GAWTC	3 cut(s)	79, 351, 751
Tru1I	TTAA	4 cut(s)	189, 653, 683, 743
Tru9I	TTAA	4 cut(s)	189, 653, 683, 743
TscAI	CASTG	4 cut(s)	332, 383, 461, 600
TseFI	GTSAC	2 cut(s)	122, 212
TseI	GCWGC	1 cut(s)	223
Tsp45I	GTSAC	2 cut(s)	122, 212
TspDTI	ATGAA	3 cut(s)	33, 144, 645
TspGWI	ACGGA	3 cut(s)	63, 78, 744
TspRI	CASTG	4 cut(s)	332, 383, 461, 600
VspI	ATTAAT	1 cut(s)	743
XapI	RAATTY	3 cut(s)	367, 649, 722
XbaI	TCTAGA	1 cut(s)	608
XceI	RCATGY	2 cut(s)	145, 607
XspI	CTAG	1 cut(s)	609
Zsp2I	ATGCAT	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.