Rroxscaffold_5G00363520

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0009916
Physical Location & Seq
Reverse (-)
44771708 .. 44775104
3397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00363520.1

Sequence Viewer

Length: 888 bp
ATGAAGACGATGGTGTCCGCGCCGCCGTGGAGTTGCGGGAGGAGCGATTTCCGATCGGGTTTCTGTCGGGTCTCGCCGCGTCTCGGACAAACAGAGAAGCCAAACTCCCATCCTTCCCAAATCGGGAAACTTCTTCTTTGCTTTGTCTGCAATTCCCTTCCCTTCCTCCAACTCTCATGGAAGGCTCAGGCAATGAACGTCCCAGTTTTGGGAAGATGGGTTACGGATGCAAGCATTACAGAAGGAGATGCCAGATTCGAGCTCCGTGTTGCAACGAGATCTACCCATGTCGCCATTGTCACAATGAAGCCACGCATGTTGAGCAACCCCTTTGATCGGCATGAGCTCGTTCGCCACGATGTTAAACAAGTTGTTTGTTCAGTCTGTGACACAGAGCAGCCGGTGGCTCAAGTTTGTACCAACTGCGGCGTTAGTATGGGGGAATATTTCTGTGATATTTGCAAGTTCTATGATGATGATACAGAGAAGGGGCAATTTCACTGTCATGATTGTGGGATCTGCAGAATCGGTGGTCGTGAAAATTTTTATCACTGCAAGAAGTGTGGGTCTTGCTATTCGATTGGCTTGCGTGATAATCACGTGTGTGTAGAGAACTCCATGCGGCACCACTGCCCCATTTGTTACGAGTTCCTTTTTGACTCGCTGAAAGACACTACTGTATTGAAATGTGGGCACACAATGCATTGTGAATGTTACAACGAAATGATAAAGCGGGACAAATATTGTTGTCCAATATGCTCCAAGTCAGTGATTGACATGTCTAGAACGTGGAAGAGAATAGATGAAGAGATAGAAGCAACTGTTATGCCCGAGGATTATCGGAATAAGAAGGTACTTGTTTTCATCCTTGTTCAGGTCTCCGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000731 GO:0002039 GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031347 GO:0031348 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032102 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0090304 GO:0140096 GO:1900424 GO:1900425 GO:1901360 GO:1901362 GO:1901483 GO:1901485 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-C3HC4 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

295

Amino Acids

33.73

Weight (kDa)

7.94

Isoelectric Point (pI)

49.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CHY PF05495 112 - 149 1.7e-08 CHY zinc finger
zf-RING_2 PF13639 210 - 253 3.5e-06 Ring finger domain
zinc_ribbon_6 PF14599 258 - 287 5.1e-06 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
AccB1I GGYRCC 1 cut(s) 624
AccII CGCG 2 cut(s) 20, 79
AciI CCGC 7 cut(s) 18, 23, 36, 77, 426, 622, 733
AclWI GGATC 1 cut(s) 524
AcsI RAATTY 1 cut(s) 541
AcvI CACGTG 1 cut(s) 601
AfaI GTAC 2 cut(s) 418, 855
AfiI CCNNNNNNNGG 6 cut(s) 83, 123, 208, 209, 336, 874
AflIII ACRYGT 2 cut(s) 600, 777
AgsI TTSAA 1 cut(s) 685
AleI CACNNNNGTG 1 cut(s) 603
AluBI AGCT 2 cut(s) 262, 346
AluI AGCT 2 cut(s) 262, 346
Alw21I GWGCWC 2 cut(s) 264, 348
Alw26I GTCTC 3 cut(s) 76, 86, 883
AlwI GGATC 1 cut(s) 524
Ama87I CYCGRG 1 cut(s) 830
ApeKI GCWGC 1 cut(s) 397
ApoI RAATTY 1 cut(s) 541
AspLEI GCGC 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 830
BaeGI GKGCMC 1 cut(s) 696
BanI GGYRCC 1 cut(s) 624
BanII GRGCYC 2 cut(s) 264, 348
BarI GAAGNNNNNNTAC 2 cut(s) 205, 237
BbrPI CACGTG 1 cut(s) 601
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 2 cut(s) 264, 348
BbvI GCAGC 1 cut(s) 409
BccI CCATC 3 cut(s) 4, 117, 210
BceAI ACGGC 1 cut(s) 10
BcgI CGANNNNNNTGC 2 cut(s) 568, 602
BcoDI GTCTC 3 cut(s) 76, 86, 883
BfaI CTAG 1 cut(s) 783
BfmI CTRYAG 1 cut(s) 520
BglII AGATCT 1 cut(s) 278
BisI GCNGC 5 cut(s) 23, 77, 398, 427, 623
BlsI GCNGC 5 cut(s) 24, 78, 399, 428, 624
BmeT110I CYCGRG 1 cut(s) 830
BmiI GGNNCC 1 cut(s) 626
BmrI ACTGGG 1 cut(s) 197
BmsI GCATC 2 cut(s) 217, 238
BmuI ACTGGG 1 cut(s) 197
BpiI GAAGAC 1 cut(s) 11
Bpu10I CCTNAGC 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 393
BsaAI YACGTR 1 cut(s) 601
BsaI GGTCTC 2 cut(s) 76, 883
BsaJI CCNNGG 2 cut(s) 26, 831
Bsc4I CCNNNNNNNGG 6 cut(s) 83, 123, 208, 209, 336, 874
Bse118I RCCGGY 1 cut(s) 400
Bse1I ACTGG 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 198
BseDI CCNNGG 2 cut(s) 26, 831
BseGI GGATG 3 cut(s) 109, 232, 864
BseLI CCNNNNNNNGG 6 cut(s) 83, 123, 208, 209, 336, 874
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 1 cut(s) 55
BseSI GKGCMC 1 cut(s) 696
BseXI GCAGC 1 cut(s) 409
Bsh1236I CGCG 2 cut(s) 20, 79
Bsh1285I CGRYCG 1 cut(s) 56
BshNI GGYRCC 1 cut(s) 624
BsiEI CGRYCG 1 cut(s) 56
BsiHKAI GWGCWC 2 cut(s) 264, 348
BsiHKCI CYCGRG 1 cut(s) 830
BsiSI CCGG 1 cut(s) 401
BslFI GGGAC 2 cut(s) 185, 749
BslI CCNNNNNNNGG 6 cut(s) 83, 123, 208, 209, 336, 874
BsmAI GTCTC 3 cut(s) 76, 86, 883
BsmBI CGTCTC 1 cut(s) 86
BsmFI GGGAC 2 cut(s) 185, 749
Bso31I GGTCTC 2 cut(s) 76, 883
BsoBI CYCGRG 1 cut(s) 830
Bsp1286I GDGCHC 3 cut(s) 264, 348, 696
Bsp143I GATC 4 cut(s) 53, 278, 334, 516
BspACI CCGC 7 cut(s) 18, 23, 36, 77, 426, 622, 733
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 2 cut(s) 20, 79
BspHI TCATGA 1 cut(s) 505
BspLI GGNNCC 1 cut(s) 626
BspMAI CTGCAG 1 cut(s) 524
BspPI GGATC 1 cut(s) 524
BspT107I GGYRCC 1 cut(s) 624
BspTNI GGTCTC 2 cut(s) 76, 883
BsrDI GCAATG 1 cut(s) 198
BsrFI RCCGGY 1 cut(s) 400
BsrI ACTGG 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 400
BssECI CCNNGG 2 cut(s) 26, 831
BssMI GATC 4 cut(s) 53, 278, 334, 516
Bst4CI ACNGT 3 cut(s) 503, 679, 823
Bst6I CTCTTC 2 cut(s) 788, 801
BstAPI GCANNNNNTGC 1 cut(s) 700
BstBAI YACGTR 1 cut(s) 601
BstC8I GCNNGC 2 cut(s) 232, 587
BstDEI CTNAG 1 cut(s) 186
BstDSI CCRYGG 1 cut(s) 26
BstENI CCTNNNNNAGG 1 cut(s) 872
BstF5I GGATG 3 cut(s) 109, 232, 864
BstFNI CGCG 2 cut(s) 20, 79
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 4 cut(s) 56, 281, 337, 519
BstMAI GTCTC 3 cut(s) 76, 86, 883
BstMBI GATC 4 cut(s) 53, 278, 334, 516
BstMCI CGRYCG 1 cut(s) 56
BstMWI GCNNNNNNNGC 4 cut(s) 42, 147, 321, 700
BstNSI RCATGY 2 cut(s) 319, 781
BstSFI CTRYAG 1 cut(s) 520
BstSLI GKGCMC 1 cut(s) 696
BstUI CGCG 2 cut(s) 20, 79
BstV1I GCAGC 1 cut(s) 409
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 2 cut(s) 278, 516
BstYI RGATCY 2 cut(s) 278, 516
BtgI CCRYGG 1 cut(s) 26
BtsCI GGATG 3 cut(s) 109, 232, 864
BtsI GCAGTG 2 cut(s) 550, 628
BtsIMutI CAGTG 4 cut(s) 499, 550, 628, 774
Cac8I GCNNGC 2 cut(s) 232, 587
CciI TCATGA 1 cut(s) 505
CfoI GCGC 1 cut(s) 22
Cfr10I RCCGGY 1 cut(s) 400
CseI GACGC 1 cut(s) 68
Csp6I GTAC 2 cut(s) 417, 854
CspCI CAANNNNNGTGG 4 cut(s) 300, 335, 544, 579
CviAII CATG 7 cut(s) 177, 287, 316, 341, 506, 619, 778
CviJI RGCY 8 cut(s) 100, 185, 262, 310, 346, 400, 407, 585
CviKI_1 RGCY 8 cut(s) 100, 185, 262, 310, 346, 400, 407, 585
CviQI GTAC 2 cut(s) 417, 854
DdeI CTNAG 1 cut(s) 186
DpnI GATC 4 cut(s) 55, 280, 336, 518
DpnII GATC 4 cut(s) 53, 278, 334, 516
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
Eam1104I CTCTTC 2 cut(s) 788, 801
EarI CTCTTC 2 cut(s) 788, 801
Ecl136II GAGCTC 2 cut(s) 262, 346
Eco24I GRGCYC 2 cut(s) 264, 348
Eco31I GGTCTC 2 cut(s) 76, 883
Eco53kI GAGCTC 2 cut(s) 262, 346
Eco72I CACGTG 1 cut(s) 601
Eco88I CYCGRG 1 cut(s) 830
EcoICRI GAGCTC 2 cut(s) 262, 346
EcoNI CCTNNNNNAGG 1 cut(s) 872
EcoT22I ATGCAT 1 cut(s) 705
EcoT38I GRGCYC 2 cut(s) 264, 348
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 7 cut(s) 180, 290, 319, 344, 509, 622, 781
FaqI GGGAC 2 cut(s) 185, 749
FatI CATG 7 cut(s) 176, 286, 315, 340, 505, 618, 777
FauI CCCGC 2 cut(s) 29, 726
Fnu4HI GCNGC 5 cut(s) 23, 77, 398, 427, 623
FokI GGATG 3 cut(s) 96, 239, 851
FriOI GRGCYC 2 cut(s) 264, 348
Fsp4HI GCNGC 5 cut(s) 23, 77, 398, 427, 623
FspBI CTAG 1 cut(s) 783
GlaI GCGC 1 cut(s) 21
GluI GCNGC 5 cut(s) 23, 77, 398, 427, 623
HapII CCGG 1 cut(s) 401
HgaI GACGC 1 cut(s) 68
HhaI GCGC 1 cut(s) 22
Hin1II CATG 7 cut(s) 180, 290, 319, 344, 509, 622, 781
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HinfI GANTC 3 cut(s) 255, 525, 659
HpaII CCGG 1 cut(s) 401
Hpy188I TCNGA 3 cut(s) 53, 86, 843
Hpy188III TCNNGA 4 cut(s) 124, 506, 536, 783
HpyAV CCTTC 7 cut(s) 123, 167, 172, 175, 236, 481, 844
HpyCH4III ACNGT 3 cut(s) 503, 679, 823
HpyCH4IV ACGT 3 cut(s) 198, 600, 788
HpyCH4V TGCA 7 cut(s) 150, 230, 272, 462, 522, 555, 703
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 147, 321, 700
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 3 cut(s) 198, 600, 788
Hsp92II CATG 7 cut(s) 180, 290, 319, 344, 509, 622, 781
HspAI GCGC 1 cut(s) 20
Kzo9I GATC 4 cut(s) 53, 278, 334, 516
LmnI GCTCC 3 cut(s) 42, 267, 764
LpnPI CCDG 5 cut(s) 173, 216, 265, 414, 860
Lsp1109I GCAGC 1 cut(s) 409
LweI GCATC 2 cut(s) 217, 238
MaeI CTAG 1 cut(s) 783
MaeII ACGT 3 cut(s) 198, 600, 788
MaeIII GTNAC 5 cut(s) 220, 298, 386, 641, 713
MalI GATC 4 cut(s) 55, 280, 336, 518
MboI GATC 4 cut(s) 53, 278, 334, 516
MboII GAAGA 5 cut(s) 16, 125, 225, 805, 818
MflI RGATCY 2 cut(s) 278, 516
MhlI GDGCHC 3 cut(s) 264, 348, 696
MluCI AATT 3 cut(s) 151, 494, 541
MlyI GAGTC 1 cut(s) 653
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 3 cut(s) 33, 176, 826
Mph1103I ATGCAT 1 cut(s) 705
MseI TTAA 1 cut(s) 363
MslI CAYNNNNRTG 3 cut(s) 504, 510, 603
MspI CCGG 1 cut(s) 401
MvnI CGCG 2 cut(s) 20, 79
MwoI GCNNNNNNNGC 4 cut(s) 42, 147, 321, 700
NdeII GATC 4 cut(s) 53, 278, 334, 516
NlaIII CATG 7 cut(s) 180, 290, 319, 344, 509, 622, 781
NlaIV GGNNCC 1 cut(s) 626
NmuCI GTSAC 2 cut(s) 298, 386
NsiI ATGCAT 1 cut(s) 705
NspI RCATGY 2 cut(s) 319, 781
OliI CACNNNNGTG 1 cut(s) 603
PagI TCATGA 1 cut(s) 505
PciI ACATGT 1 cut(s) 777
PcsI WCGNNNNNNNCGW 1 cut(s) 354
PfeI GAWTC 2 cut(s) 255, 525
PkrI GCNGC 5 cut(s) 24, 78, 399, 428, 624
Ple19I CGATCG 1 cut(s) 56
PleI GAGTC 1 cut(s) 653
PmaCI CACGTG 1 cut(s) 601
PmlI CACGTG 1 cut(s) 601
PpsI GAGTC 1 cut(s) 653
Ppu21I YACGTR 1 cut(s) 601
PscI ACATGT 1 cut(s) 777
Psp124BI GAGCTC 2 cut(s) 264, 348
PspCI CACGTG 1 cut(s) 601
PspN4I GGNNCC 1 cut(s) 626
PstI CTGCAG 1 cut(s) 524
PsuI RGATCY 2 cut(s) 278, 516
PvuI CGATCG 1 cut(s) 56
RsaI GTAC 2 cut(s) 418, 855
RsaNI GTAC 2 cut(s) 417, 854
RseI CAYNNNNRTG 3 cut(s) 504, 510, 603
SacI GAGCTC 2 cut(s) 264, 348
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 5 cut(s) 23, 77, 398, 427, 623
Sau3AI GATC 4 cut(s) 53, 278, 334, 516
SchI GAGTC 1 cut(s) 653
SduI GDGCHC 3 cut(s) 264, 348, 696
SetI ASST 7 cut(s) 201, 264, 348, 603, 791, 855, 879
SfaNI GCATC 2 cut(s) 217, 238
SfcI CTRYAG 1 cut(s) 520
SmiMI CAYNNNNRTG 3 cut(s) 504, 510, 603
SmlI CTYRAG 1 cut(s) 408
SmoI CTYRAG 1 cut(s) 408
Sse9I AATT 3 cut(s) 151, 494, 541
SsiI CCGC 7 cut(s) 18, 23, 36, 77, 426, 622, 733
SspI AATATT 2 cut(s) 446, 743
SspMI CTAG 1 cut(s) 783
SstI GAGCTC 2 cut(s) 264, 348
TaaI ACNGT 3 cut(s) 503, 679, 823
TaiI ACGT 3 cut(s) 201, 603, 791
TaqI TCGA 2 cut(s) 258, 578
TasI AATT 3 cut(s) 151, 494, 541
TauI GCSGC 4 cut(s) 25, 79, 429, 625
TfiI GAWTC 2 cut(s) 255, 525
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 4 cut(s) 506, 557, 635, 774
TseFI GTSAC 2 cut(s) 298, 386
TseI GCWGC 1 cut(s) 397
Tsp45I GTSAC 2 cut(s) 298, 386
TspDTI ATGAA 5 cut(s) 17, 209, 320, 819, 853
TspGWI ACGGA 3 cut(s) 239, 254, 871
TspRI CASTG 4 cut(s) 506, 557, 635, 774
XagI CCTNNNNNAGG 1 cut(s) 872
XapI RAATTY 1 cut(s) 541
XbaI TCTAGA 1 cut(s) 782
XceI RCATGY 2 cut(s) 319, 781
XspI CTAG 1 cut(s) 783
Zsp2I ATGCAT 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.