FvH4_4g17350

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0009916
Physical Location & Seq
Reverse (-)
21278642 .. 21281938
3297 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17350.t1

Sequence Viewer

Length: 804 bp
ATGGAAGCCTCAGGCAATGAACGTCGAAGTTTTGGGAAGATGGGTTACGGATGCAAGCATTACAGAAGGAGATGCCGGATTCGAGCTCCGTGCTGCAACGAGATCTACCCATGTCGCCATTGCCACAACGAGGCCACGAGCATGTTGAGCAACCCCTTTGATCGGCATGAGCTCGTTCGACACGATGTTAAACAAGTTATTTGTTCTGTCTGTGACACAGAGCAGCCGGTGGCTCGAGATTGCACTAACTGCGGCGTCAGTATGGGGGAATATTTCTGTGATATTTGCAAGTTCTATGATGATGATACTGAGAAAGGGCAATTTCACTGTGATGATTGTGGGATCTGCAGAATCGGTGGCCGTGAAAATTTTTATCACTGCAAAAAGTGTGGGTCTTGCTATTCGATCAGCTTGCTTGATAACCACCTGTGTGTAGAGAACTCCATGCGGCACCACTGCCCCATTTGCTACGAGTTCCTTTTTGACTCTCTGAAAGACACCACTGTAATGAAATGTGGGCACACGATGCATTGTGAATGTTACAACGAAATGATAAAGCGGGACAAATATTGTTGTCCAATATGCTCCAAGTCCGTGATTGACATGTCTAGAACTTGGAAGAGAATCGATGAAGAGATCGAAGCAACCGTTATGCCCGAGGATTATCGGAATAAAAAGGTTTGGATCCTCTGCAATGACTGCAATGACACAACCGAAGTTTTCTTCCACATTATTGGCCAGAAATGCAACCACTGCAAATCATACAACACTCGCACAATTGCCCCTCCAGTTCTTCCTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000731 GO:0002039 GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031347 GO:0031348 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032102 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0090304 GO:0140096 GO:1900424 GO:1900425 GO:1901360 GO:1901362 GO:1901483 GO:1901485 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-C3HC4 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

268

Amino Acids

31.14

Weight (kDa)

6.87

Isoelectric Point (pI)

56.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CHY PF05495 18 - 91 1.5e-20 CHY zinc finger
zf-RING_2 PF13639 152 - 195 4.2e-06 Ring finger domain
zinc_ribbon_6 PF14599 200 - 258 1.4e-27 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 450
AciI CCGC 3 cut(s) 252, 448, 559
AclWI GGATC 3 cut(s) 350, 679, 692
AcoI YGGCCR 2 cut(s) 358, 736
AcsI RAATTY 1 cut(s) 367
AcyI GRCGYC 1 cut(s) 255
AfiI CCNNNNNNNGG 2 cut(s) 130, 162
AflIII ACRYGT 1 cut(s) 603
AleI CACNNNNGTG 1 cut(s) 429
AluBI AGCT 3 cut(s) 86, 172, 411
AluI AGCT 3 cut(s) 86, 172, 411
Alw21I GWGCWC 2 cut(s) 88, 174
AlwI GGATC 3 cut(s) 350, 679, 692
Ama87I CYCGRG 2 cut(s) 234, 656
AoxI GGCC 3 cut(s) 132, 358, 736
ApeKI GCWGC 2 cut(s) 93, 223
ApoI RAATTY 1 cut(s) 367
AvaI CYCGRG 2 cut(s) 234, 656
AxyI CCTNAGG 1 cut(s) 10
BaeGI GKGCMC 1 cut(s) 522
BalI TGGCCA 1 cut(s) 738
BamHI GGATCC 1 cut(s) 684
BanI GGYRCC 1 cut(s) 450
BanII GRGCYC 2 cut(s) 88, 174
BarI GAAGNNNNNNTAC 2 cut(s) 29, 61
BauI CACGAG 1 cut(s) 136
Bbv12I GWGCWC 2 cut(s) 88, 174
BbvI GCAGC 2 cut(s) 80, 235
BccI CCATC 1 cut(s) 34
BceAI ACGGC 1 cut(s) 345
BcgI CGANNNNNNTGC 4 cut(s) 72, 106, 394, 428
BfaI CTAG 1 cut(s) 609
BfmI CTRYAG 1 cut(s) 346
BglII AGATCT 1 cut(s) 102
BisI GCNGC 4 cut(s) 94, 224, 253, 449
BlsI GCNGC 4 cut(s) 95, 225, 254, 450
BmeT110I CYCGRG 2 cut(s) 234, 656
BmiI GGNNCC 2 cut(s) 452, 686
BmsI GCATC 3 cut(s) 41, 62, 516
BpmI CTGGAG 1 cut(s) 771
Bsa29I ATCGAT 1 cut(s) 627
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 657
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 162
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 788
Bse21I CCTNAGG 1 cut(s) 10
Bse3DI GCAATG 4 cut(s) 22, 118, 700, 709
BseCI ATCGAT 1 cut(s) 627
BseDI CCNNGG 1 cut(s) 657
BseGI GGATG 1 cut(s) 56
BseLI CCNNNNNNNGG 2 cut(s) 130, 162
BseMI GCAATG 4 cut(s) 22, 118, 700, 709
BseMII CTCAG 2 cut(s) 24, 300
BseNI ACTGG 1 cut(s) 788
BseSI GKGCMC 1 cut(s) 522
BseXI GCAGC 2 cut(s) 80, 235
BshFI GGCC 3 cut(s) 134, 360, 738
BshNI GGYRCC 1 cut(s) 450
BshVI ATCGAT 1 cut(s) 627
BsiHKAI GWGCWC 2 cut(s) 88, 174
BsiHKCI CYCGRG 2 cut(s) 234, 656
BsiSI CCGG 2 cut(s) 76, 227
BslFI GGGAC 1 cut(s) 575
BslI CCNNNNNNNGG 2 cut(s) 130, 162
BsmFI GGGAC 1 cut(s) 575
BsnI GGCC 3 cut(s) 134, 360, 738
BsoBI CYCGRG 2 cut(s) 234, 656
Bsp1286I GDGCHC 3 cut(s) 88, 174, 522
Bsp143I GATC 6 cut(s) 102, 160, 342, 405, 636, 684
BspACI CCGC 3 cut(s) 252, 448, 559
BspANI GGCC 3 cut(s) 134, 360, 738
BspCNI CTCAG 2 cut(s) 23, 301
BspDI ATCGAT 1 cut(s) 627
BspLI GGNNCC 2 cut(s) 452, 686
BspMAI CTGCAG 1 cut(s) 350
BspPI GGATC 3 cut(s) 350, 679, 692
BspT107I GGYRCC 1 cut(s) 450
BsrDI GCAATG 4 cut(s) 22, 118, 700, 709
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 1 cut(s) 788
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 657
BssMI GATC 6 cut(s) 102, 160, 342, 405, 636, 684
BssNI GRCGYC 1 cut(s) 255
BssSI CACGAG 1 cut(s) 136
Bst2BI CACGAG 1 cut(s) 136
Bst4CI ACNGT 3 cut(s) 329, 505, 649
Bst6I CTCTTC 2 cut(s) 614, 627
BstACI GRCGYC 1 cut(s) 255
BstAPI GCANNNNNTGC 4 cut(s) 249, 526, 699, 753
BstC8I GCNNGC 2 cut(s) 56, 413
BstDEI CTNAG 2 cut(s) 10, 309
BstF5I GGATG 1 cut(s) 56
BstKTI GATC 6 cut(s) 105, 163, 345, 408, 639, 687
BstMBI GATC 6 cut(s) 102, 160, 342, 405, 636, 684
BstMWI GCNNNNNNNGC 7 cut(s) 147, 249, 465, 526, 699, 744, 753
BstNSI RCATGY 2 cut(s) 145, 607
BstSFI CTRYAG 1 cut(s) 346
BstSLI GKGCMC 1 cut(s) 522
BstV1I GCAGC 2 cut(s) 80, 235
BstX2I RGATCY 3 cut(s) 102, 342, 684
BstXI CCANNNNNNTGG 1 cut(s) 734
BstYI RGATCY 3 cut(s) 102, 342, 684
Bsu15I ATCGAT 1 cut(s) 627
Bsu36I CCTNAGG 1 cut(s) 10
BsuRI GGCC 3 cut(s) 134, 360, 738
BsuTUI ATCGAT 1 cut(s) 627
BtsCI GGATG 1 cut(s) 56
BtsI GCAGTG 3 cut(s) 376, 454, 751
BtsIMutI CAGTG 5 cut(s) 325, 376, 454, 501, 751
Cac8I GCNNGC 2 cut(s) 56, 413
Cfr10I RCCGGY 1 cut(s) 226
ClaI ATCGAT 1 cut(s) 627
CseI GACGC 1 cut(s) 244
CspCI CAANNNNNGTGG 2 cut(s) 370, 405
CviAII CATG 5 cut(s) 111, 142, 167, 445, 604
CviJI RGCY 9 cut(s) 8, 86, 134, 172, 226, 233, 360, 411, 738
CviKI_1 RGCY 9 cut(s) 8, 86, 134, 172, 226, 233, 360, 411, 738
DdeI CTNAG 2 cut(s) 10, 309
DpnI GATC 6 cut(s) 104, 162, 344, 407, 638, 686
DpnII GATC 6 cut(s) 102, 160, 342, 405, 636, 684
EaeI YGGCCR 2 cut(s) 358, 736
Eam1104I CTCTTC 2 cut(s) 614, 627
EarI CTCTTC 2 cut(s) 614, 627
Ecl136II GAGCTC 2 cut(s) 86, 172
Eco24I GRGCYC 2 cut(s) 88, 174
Eco53kI GAGCTC 2 cut(s) 86, 172
Eco81I CCTNAGG 1 cut(s) 10
Eco88I CYCGRG 2 cut(s) 234, 656
EcoICRI GAGCTC 2 cut(s) 86, 172
EcoT22I ATGCAT 1 cut(s) 531
EcoT38I GRGCYC 2 cut(s) 88, 174
FaeI CATG 5 cut(s) 114, 145, 170, 448, 607
FaqI GGGAC 1 cut(s) 575
FatI CATG 5 cut(s) 110, 141, 166, 444, 603
FauI CCCGC 1 cut(s) 552
Fnu4HI GCNGC 4 cut(s) 94, 224, 253, 449
FokI GGATG 1 cut(s) 63
FriOI GRGCYC 2 cut(s) 88, 174
Fsp4HI GCNGC 4 cut(s) 94, 224, 253, 449
FspBI CTAG 1 cut(s) 609
GluI GCNGC 4 cut(s) 94, 224, 253, 449
GsuI CTGGAG 1 cut(s) 771
HaeIII GGCC 3 cut(s) 134, 360, 738
HapII CCGG 2 cut(s) 76, 227
HgaI GACGC 1 cut(s) 244
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 5 cut(s) 114, 145, 170, 448, 607
HinfI GANTC 4 cut(s) 79, 351, 485, 624
HpaII CCGG 2 cut(s) 76, 227
Hpy188I TCNGA 2 cut(s) 492, 669
Hpy188III TCNNGA 2 cut(s) 236, 609
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 1 cut(s) 60
HpyCH4III ACNGT 3 cut(s) 329, 505, 649
HpyCH4IV ACGT 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 7 cut(s) 147, 249, 465, 526, 699, 744, 753
HpyF3I CTNAG 2 cut(s) 10, 309
HpySE526I ACGT 1 cut(s) 22
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 5 cut(s) 114, 145, 170, 448, 607
Kzo9I GATC 6 cut(s) 102, 160, 342, 405, 636, 684
LmnI GCTCC 2 cut(s) 91, 590
LpnPI CCDG 4 cut(s) 89, 240, 440, 752
Lsp1109I GCAGC 2 cut(s) 80, 235
LweI GCATC 3 cut(s) 41, 62, 516
MaeI CTAG 1 cut(s) 609
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 3 cut(s) 44, 212, 539
MalI GATC 6 cut(s) 104, 162, 344, 407, 638, 686
MboI GATC 6 cut(s) 102, 160, 342, 405, 636, 684
MboII GAAGA 5 cut(s) 49, 631, 644, 715, 785
MfeI CAATTG 1 cut(s) 777
MflI RGATCY 3 cut(s) 102, 342, 684
MhlI GDGCHC 3 cut(s) 88, 174, 522
MlsI TGGCCA 1 cut(s) 738
MluCI AATT 3 cut(s) 320, 367, 777
MluNI TGGCCA 1 cut(s) 738
MlyI GAGTC 1 cut(s) 479
MnlI CCTC 5 cut(s) 19, 124, 652, 698, 795
Mox20I TGGCCA 1 cut(s) 738
Mph1103I ATGCAT 1 cut(s) 531
MscI TGGCCA 1 cut(s) 738
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 4 cut(s) 140, 330, 429, 506
Msp20I TGGCCA 1 cut(s) 738
MspI CCGG 2 cut(s) 76, 227
MunI CAATTG 1 cut(s) 777
MwoI GCNNNNNNNGC 7 cut(s) 147, 249, 465, 526, 699, 744, 753
NdeII GATC 6 cut(s) 102, 160, 342, 405, 636, 684
NlaIII CATG 5 cut(s) 114, 145, 170, 448, 607
NlaIV GGNNCC 2 cut(s) 452, 686
NmuCI GTSAC 1 cut(s) 212
NsiI ATGCAT 1 cut(s) 531
NspI RCATGY 2 cut(s) 145, 607
OliI CACNNNNGTG 1 cut(s) 429
PaeR7I CTCGAG 1 cut(s) 234
PciI ACATGT 1 cut(s) 603
PcsI WCGNNNNNNNCGW 2 cut(s) 180, 645
PfeI GAWTC 3 cut(s) 79, 351, 624
PkrI GCNGC 4 cut(s) 95, 225, 254, 450
PleI GAGTC 1 cut(s) 479
PpsI GAGTC 1 cut(s) 479
PscI ACATGT 1 cut(s) 603
Psp124BI GAGCTC 2 cut(s) 88, 174
PspN4I GGNNCC 2 cut(s) 452, 686
PstI CTGCAG 1 cut(s) 350
PsuI RGATCY 3 cut(s) 102, 342, 684
RseI CAYNNNNRTG 4 cut(s) 140, 330, 429, 506
SacI GAGCTC 2 cut(s) 88, 174
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 4 cut(s) 94, 224, 253, 449
Sau3AI GATC 6 cut(s) 102, 160, 342, 405, 636, 684
SchI GAGTC 1 cut(s) 479
SduI GDGCHC 3 cut(s) 88, 174, 522
SetI ASST 6 cut(s) 25, 88, 174, 413, 429, 681
SfaNI GCATC 3 cut(s) 41, 62, 516
SfcI CTRYAG 1 cut(s) 346
Sfr274I CTCGAG 1 cut(s) 234
SlaI CTCGAG 1 cut(s) 234
SmiMI CAYNNNNRTG 4 cut(s) 140, 330, 429, 506
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 3 cut(s) 320, 367, 777
SsiI CCGC 3 cut(s) 252, 448, 559
SspI AATATT 2 cut(s) 272, 569
SspMI CTAG 1 cut(s) 609
SstI GAGCTC 2 cut(s) 88, 174
TaaI ACNGT 3 cut(s) 329, 505, 649
TaiI ACGT 1 cut(s) 25
TaqI TCGA 7 cut(s) 25, 82, 178, 235, 404, 627, 639
TasI AATT 3 cut(s) 320, 367, 777
TauI GCSGC 2 cut(s) 255, 451
TfiI GAWTC 3 cut(s) 79, 351, 624
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 5 cut(s) 332, 383, 461, 508, 758
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 2 cut(s) 93, 223
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 3 cut(s) 33, 524, 645
TspGWI ACGGA 3 cut(s) 63, 78, 583
TspRI CASTG 5 cut(s) 332, 383, 461, 508, 758
XapI RAATTY 1 cut(s) 367
XbaI TCTAGA 1 cut(s) 608
XceI RCATGY 2 cut(s) 145, 607
XhoI CTCGAG 1 cut(s) 234
XspI CTAG 1 cut(s) 609
Zsp2I ATGCAT 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.