Rmu_sc0004892.1_g000003

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004892.1
OG0009916
Physical Location & Seq
Reverse (-)
4077 .. 8104
4028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004892.1_g000003.1.cds

Sequence Viewer

Length: 1131 bp
atggaaggctcaggcaatgaacgtcccagctttgggaagatgggttacggatgcaagcattacagaaggagatgccagattcgagctccgtgttgcaacgagatctacccatgtcgccattgtcacaatgaagccacgagcatgttgagcaacccctttgatcggcatgagctcgttcgccacgatgttaaacaggttgtttgttcagtctgtgacacagagcagccggggattcagacaaacagagaaggcagactcccatccttcccaaatcgggaaacttcttctttgctttgtctgcaattcccttcccttgctccaactctcatggaaggctcaggcaatgaacgtcccagctttgggaagatgggttacggatgcaagcattacagaaggagatgccagattcgagctccgtgttgcaacgagatctacccatgtcgccattgtcacaatgaagccacgagcatgttgagcaacccctttgatcggcatgagctcgttcgccacgatgttaaacaggttgtttgttcagtctgtgacacagagcagccggtggctcaagtttgtactaactgcggcgttagtatgggggaatatttctgtgatatttgcaagttctatgatgatgataccgagaaagggcaatttcactgtcatgattgtgggatctgcagaatcggtggtcgtgaaaatttttatcactgcaagaagtgtgggtcttgctattcgattggcttgcgtgataatcacctgtgtgtagagaactccatgcggcaccactgccccatttgttacgagttcctttttgactcgctgaaagacactactgtattgaaatgtgggcacacaatgcattgtgaatgttacaacgaaatgataaagcgggacaaatattgttgtccaatatgctccaagtcagtgattgacatgtctagaacgtggaagagaatagatgaagagatagaagcaactgttatgcccgaggattatcggaataagaaggtttggatcctgtgcaatgactgcaatgacacaaccgaagtttacttccacattattggccagaaatgcaaccactgcaaatcatacaacacccgcacaattgcccctccagttcttcctcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000731 GO:0002039 GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031347 GO:0031348 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032102 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0090304 GO:0140096 GO:1900424 GO:1900425 GO:1901360 GO:1901362 GO:1901483 GO:1901485 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-C3HC4 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

376

Amino Acids

43.42

Weight (kDa)

7.6

Isoelectric Point (pI)

56.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 777
AciI CCGC 4 cut(s) 579, 775, 886, 1099
AclWI GGATC 3 cut(s) 677, 1006, 1019
AcoI YGGCCR 1 cut(s) 1063
AcsI RAATTY 1 cut(s) 694
AfaI GTAC 1 cut(s) 571
AfiI CCNNNNNNNGG 8 cut(s) 32, 33, 162, 274, 359, 360, 489, 642
AflIII ACRYGT 1 cut(s) 930
AgsI TTSAA 1 cut(s) 838
AleI CACNNNNGTG 1 cut(s) 756
AluBI AGCT 6 cut(s) 30, 86, 172, 357, 413, 499
AluI AGCT 6 cut(s) 30, 86, 172, 357, 413, 499
Alw21I GWGCWC 4 cut(s) 88, 174, 415, 501
AlwI GGATC 3 cut(s) 677, 1006, 1019
Ama87I CYCGRG 1 cut(s) 983
AoxI GGCC 1 cut(s) 1063
ApeKI GCWGC 2 cut(s) 223, 550
ApoI RAATTY 1 cut(s) 694
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 1 cut(s) 743
AvaI CYCGRG 1 cut(s) 983
BaeGI GKGCMC 1 cut(s) 849
BalI TGGCCA 1 cut(s) 1065
BamHI GGATCC 1 cut(s) 1011
BanI GGYRCC 1 cut(s) 777
BanII GRGCYC 4 cut(s) 88, 174, 415, 501
BarI GAAGNNNNNNTAC 4 cut(s) 29, 61, 356, 388
BauI CACGAG 2 cut(s) 136, 463
Bbv12I GWGCWC 4 cut(s) 88, 174, 415, 501
BbvI GCAGC 2 cut(s) 235, 562
BccI CCATC 3 cut(s) 34, 268, 361
BcgI CGANNNNNNTGC 2 cut(s) 721, 755
BcnI CCSGG 1 cut(s) 228
BfaI CTAG 1 cut(s) 936
BfmI CTRYAG 1 cut(s) 673
BglII AGATCT 2 cut(s) 102, 429
BisI GCNGC 4 cut(s) 224, 551, 580, 776
BlsI GCNGC 4 cut(s) 225, 552, 581, 777
Bme1390I CCNGG 1 cut(s) 228
BmeT110I CYCGRG 1 cut(s) 983
BmiI GGNNCC 2 cut(s) 779, 1013
BmrFI CCNGG 1 cut(s) 228
BmsI GCATC 4 cut(s) 41, 62, 368, 389
BpmI CTGGAG 1 cut(s) 1098
Bpu10I CCTNAGC 2 cut(s) 10, 337
BpuEI CTTGAG 1 cut(s) 546
BpuMI CCSGG 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 227, 984
Bsc4I CCNNNNNNNGG 8 cut(s) 32, 33, 162, 274, 359, 360, 489, 642
Bse118I RCCGGY 1 cut(s) 553
Bse1I ACTGG 1 cut(s) 1115
Bse3DI GCAATG 4 cut(s) 22, 349, 1027, 1036
BseDI CCNNGG 2 cut(s) 227, 984
BseGI GGATG 3 cut(s) 56, 260, 383
BseLI CCNNNNNNNGG 8 cut(s) 32, 33, 162, 274, 359, 360, 489, 642
BseMI GCAATG 4 cut(s) 22, 349, 1027, 1036
BseMII CTCAG 2 cut(s) 24, 351
BseNI ACTGG 1 cut(s) 1115
BseSI GKGCMC 1 cut(s) 849
BseXI GCAGC 2 cut(s) 235, 562
BseYI CCCAGC 2 cut(s) 26, 353
BshFI GGCC 1 cut(s) 1065
BshNI GGYRCC 1 cut(s) 777
BsiHKAI GWGCWC 4 cut(s) 88, 174, 415, 501
BsiHKCI CYCGRG 1 cut(s) 983
BsiSI CCGG 2 cut(s) 227, 554
BslFI GGGAC 3 cut(s) 9, 336, 902
BslI CCNNNNNNNGG 8 cut(s) 32, 33, 162, 274, 359, 360, 489, 642
BsmFI GGGAC 3 cut(s) 9, 336, 902
BsnI GGCC 1 cut(s) 1065
BsoBI CYCGRG 1 cut(s) 983
Bsp1286I GDGCHC 5 cut(s) 88, 174, 415, 501, 849
Bsp143I GATC 6 cut(s) 102, 160, 429, 487, 669, 1011
BspACI CCGC 4 cut(s) 579, 775, 886, 1099
BspANI GGCC 1 cut(s) 1065
BspCNI CTCAG 2 cut(s) 23, 350
BspHI TCATGA 1 cut(s) 658
BspLI GGNNCC 2 cut(s) 779, 1013
BspMAI CTGCAG 1 cut(s) 677
BspPI GGATC 3 cut(s) 677, 1006, 1019
BspT107I GGYRCC 1 cut(s) 777
BsrDI GCAATG 4 cut(s) 22, 349, 1027, 1036
BsrFI RCCGGY 1 cut(s) 553
BsrI ACTGG 1 cut(s) 1115
BssAI RCCGGY 1 cut(s) 553
BssECI CCNNGG 2 cut(s) 227, 984
BssMI GATC 6 cut(s) 102, 160, 429, 487, 669, 1011
BssSI CACGAG 2 cut(s) 136, 463
Bst2BI CACGAG 2 cut(s) 136, 463
Bst4CI ACNGT 3 cut(s) 656, 832, 976
Bst6I CTCTTC 2 cut(s) 941, 954
BstAPI GCANNNNNTGC 3 cut(s) 853, 1026, 1080
BstC8I GCNNGC 3 cut(s) 56, 383, 740
BstDEI CTNAG 2 cut(s) 10, 337
BstF5I GGATG 3 cut(s) 56, 260, 383
BstKTI GATC 6 cut(s) 105, 163, 432, 490, 672, 1014
BstMBI GATC 6 cut(s) 102, 160, 429, 487, 669, 1011
BstMWI GCNNNNNNNGC 7 cut(s) 147, 298, 474, 853, 1026, 1071, 1080
BstNSI RCATGY 3 cut(s) 145, 472, 934
BstSCI CCNGG 1 cut(s) 226
BstSFI CTRYAG 1 cut(s) 673
BstSLI GKGCMC 1 cut(s) 849
BstV1I GCAGC 2 cut(s) 235, 562
BstX2I RGATCY 4 cut(s) 102, 429, 669, 1011
BstXI CCANNNNNNTGG 1 cut(s) 1061
BstYI RGATCY 4 cut(s) 102, 429, 669, 1011
BsuRI GGCC 1 cut(s) 1065
BtsCI GGATG 3 cut(s) 56, 260, 383
BtsI GCAGTG 3 cut(s) 703, 781, 1078
BtsIMutI CAGTG 5 cut(s) 652, 703, 781, 927, 1078
Cac8I GCNNGC 3 cut(s) 56, 383, 740
CciI TCATGA 1 cut(s) 658
Cfr10I RCCGGY 1 cut(s) 553
Csp6I GTAC 1 cut(s) 570
CspCI CAANNNNNGTGG 2 cut(s) 697, 732
CviQI GTAC 1 cut(s) 570
DdeI CTNAG 2 cut(s) 10, 337
DpnI GATC 6 cut(s) 104, 162, 431, 489, 671, 1013
DpnII GATC 6 cut(s) 102, 160, 429, 487, 669, 1011
EaeI YGGCCR 1 cut(s) 1063
Eam1104I CTCTTC 2 cut(s) 941, 954
EarI CTCTTC 2 cut(s) 941, 954
Ecl136II GAGCTC 4 cut(s) 86, 172, 413, 499
Eco24I GRGCYC 4 cut(s) 88, 174, 415, 501
Eco53kI GAGCTC 4 cut(s) 86, 172, 413, 499
Eco88I CYCGRG 1 cut(s) 983
EcoICRI GAGCTC 4 cut(s) 86, 172, 413, 499
EcoT22I ATGCAT 1 cut(s) 858
EcoT38I GRGCYC 4 cut(s) 88, 174, 415, 501
FaqI GGGAC 3 cut(s) 9, 336, 902
FauI CCCGC 2 cut(s) 879, 1106
Fnu4HI GCNGC 4 cut(s) 224, 551, 580, 776
FokI GGATG 3 cut(s) 63, 247, 390
FriOI GRGCYC 4 cut(s) 88, 174, 415, 501
Fsp4HI GCNGC 4 cut(s) 224, 551, 580, 776
FspBI CTAG 1 cut(s) 936
GluI GCNGC 4 cut(s) 224, 551, 580, 776
GsaI CCCAGC 2 cut(s) 30, 357
GsuI CTGGAG 1 cut(s) 1098
HaeIII GGCC 1 cut(s) 1065
HapII CCGG 2 cut(s) 227, 554
HinfI GANTC 6 cut(s) 79, 232, 255, 406, 678, 812
HpaII CCGG 2 cut(s) 227, 554
HphI GGTGA 1 cut(s) 743
Hpy166II GTNNAC 1 cut(s) 1048
Hpy188I TCNGA 2 cut(s) 237, 996
Hpy188III TCNNGA 4 cut(s) 275, 659, 689, 936
Hpy8I GTNNAC 1 cut(s) 1048
HpyAV CCTTC 7 cut(s) 60, 242, 274, 318, 326, 387, 997
HpyCH4III ACNGT 3 cut(s) 656, 832, 976
HpyCH4IV ACGT 3 cut(s) 22, 349, 941
HpyF10VI GCNNNNNNNGC 7 cut(s) 147, 298, 474, 853, 1026, 1071, 1080
HpyF3I CTNAG 2 cut(s) 10, 337
HpySE526I ACGT 3 cut(s) 22, 349, 941
Kzo9I GATC 6 cut(s) 102, 160, 429, 487, 669, 1011
LmnI GCTCC 4 cut(s) 91, 322, 418, 917
Lsp1109I GCAGC 2 cut(s) 235, 562
LweI GCATC 4 cut(s) 41, 62, 368, 389
MaeI CTAG 1 cut(s) 936
MaeII ACGT 3 cut(s) 22, 349, 941
MaeIII GTNAC 8 cut(s) 44, 122, 212, 371, 449, 539, 794, 866
MalI GATC 6 cut(s) 104, 162, 431, 489, 671, 1013
MboI GATC 6 cut(s) 102, 160, 429, 487, 669, 1011
MboII GAAGA 6 cut(s) 49, 276, 376, 958, 971, 1112
MfeI CAATTG 1 cut(s) 1104
MflI RGATCY 4 cut(s) 102, 429, 669, 1011
MhlI GDGCHC 5 cut(s) 88, 174, 415, 501, 849
MlsI TGGCCA 1 cut(s) 1065
MluCI AATT 4 cut(s) 302, 647, 694, 1104
MluNI TGGCCA 1 cut(s) 1065
MlyI GAGTC 2 cut(s) 249, 806
MmeI TCCRAC 1 cut(s) 344
MnlI CCTC 2 cut(s) 979, 1122
Mox20I TGGCCA 1 cut(s) 1065
Mph1103I ATGCAT 1 cut(s) 858
MscI TGGCCA 1 cut(s) 1065
MseI TTAA 2 cut(s) 189, 516
MslI CAYNNNNRTG 5 cut(s) 140, 467, 657, 663, 756
Msp20I TGGCCA 1 cut(s) 1065
MspI CCGG 2 cut(s) 227, 554
MspR9I CCNGG 1 cut(s) 228
MunI CAATTG 1 cut(s) 1104
MwoI GCNNNNNNNGC 7 cut(s) 147, 298, 474, 853, 1026, 1071, 1080
NciI CCSGG 1 cut(s) 228
NdeII GATC 6 cut(s) 102, 160, 429, 487, 669, 1011
NlaIV GGNNCC 2 cut(s) 779, 1013
NmuCI GTSAC 4 cut(s) 122, 212, 449, 539
NsiI ATGCAT 1 cut(s) 858
NspI RCATGY 3 cut(s) 145, 472, 934
OliI CACNNNNGTG 1 cut(s) 756
PagI TCATGA 1 cut(s) 658
PciI ACATGT 1 cut(s) 930
PcsI WCGNNNNNNNCGW 2 cut(s) 180, 507
PfeI GAWTC 4 cut(s) 79, 232, 406, 678
PkrI GCNGC 4 cut(s) 225, 552, 581, 777
PleI GAGTC 2 cut(s) 249, 806
PpsI GAGTC 2 cut(s) 249, 806
PscI ACATGT 1 cut(s) 930
Psp124BI GAGCTC 4 cut(s) 88, 174, 415, 501
PspFI CCCAGC 2 cut(s) 26, 353
PspN4I GGNNCC 2 cut(s) 779, 1013
PstI CTGCAG 1 cut(s) 677
PsuI RGATCY 4 cut(s) 102, 429, 669, 1011
RsaI GTAC 1 cut(s) 571
RsaNI GTAC 1 cut(s) 570
RseI CAYNNNNRTG 5 cut(s) 140, 467, 657, 663, 756
SacI GAGCTC 4 cut(s) 88, 174, 415, 501
SaqAI TTAA 2 cut(s) 189, 516
SatI GCNGC 4 cut(s) 224, 551, 580, 776
Sau3AI GATC 6 cut(s) 102, 160, 429, 487, 669, 1011
SchI GAGTC 2 cut(s) 249, 806
ScrFI CCNGG 1 cut(s) 228
SduI GDGCHC 5 cut(s) 88, 174, 415, 501, 849
SfaNI GCATC 4 cut(s) 41, 62, 368, 389
SfcI CTRYAG 1 cut(s) 673
SmiMI CAYNNNNRTG 5 cut(s) 140, 467, 657, 663, 756
SmlI CTYRAG 1 cut(s) 561
SmoI CTYRAG 1 cut(s) 561
Sse9I AATT 4 cut(s) 302, 647, 694, 1104
SsiI CCGC 4 cut(s) 579, 775, 886, 1099
SspI AATATT 2 cut(s) 599, 896
SspMI CTAG 1 cut(s) 936
SstI GAGCTC 4 cut(s) 88, 174, 415, 501
StyD4I CCNGG 1 cut(s) 226
TaaI ACNGT 3 cut(s) 656, 832, 976
TaiI ACGT 3 cut(s) 25, 352, 944
TaqI TCGA 3 cut(s) 82, 409, 731
TasI AATT 4 cut(s) 302, 647, 694, 1104
TatI WGTACW 1 cut(s) 569
TauI GCSGC 2 cut(s) 582, 778
TfiI GAWTC 4 cut(s) 79, 232, 406, 678
Tru1I TTAA 2 cut(s) 189, 516
Tru9I TTAA 2 cut(s) 189, 516
TscAI CASTG 5 cut(s) 659, 710, 788, 927, 1085
TseFI GTSAC 4 cut(s) 122, 212, 449, 539
TseI GCWGC 2 cut(s) 223, 550
Tsp45I GTSAC 4 cut(s) 122, 212, 449, 539
TspDTI ATGAA 5 cut(s) 33, 144, 360, 471, 972
TspGWI ACGGA 4 cut(s) 63, 78, 390, 405
TspRI CASTG 5 cut(s) 659, 710, 788, 927, 1085
XapI RAATTY 1 cut(s) 694
XbaI TCTAGA 1 cut(s) 935
XceI RCATGY 3 cut(s) 145, 472, 934
XspI CTAG 1 cut(s) 936
Zsp2I ATGCAT 1 cut(s) 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.