Rh4BG229900

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0009916
Physical Location & Seq
Forward (+)
39453435 .. 39456476
3042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG229900.1

Sequence Viewer

Length: 381 bp
ATGATGCAGAACAAGGACCCCAGCTCGACGCTGACCACCAGCCCTCTGACCGTGATCTGCTTCTTCCATTCCGGCACTTGGTCGTCGTCCTCAACGGCCTTGATTTTGTCTGAATCGACCACCAGCAACAGCTCAGATATCTCCACGGAGCTCAACTCGAGATGCCAGATTCGGTCTCCGTGTTGCAATGAGATCTACCCGTGTCGTCATTGTCACAATGAAGCCACGAGCATGTTGAGCAATCCCTTTGATCGGCATGAGTTCGTTCTCCACGATGTTAAACAAGTTGTTTGTTCAGTCTGTGACACAGAGCAGCCGCACCCAGTAAAGGGTTCCTACGGCAACCCAATCCTAAAACAGAGAACCGATGAGGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000731 GO:0002039 GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031347 GO:0031348 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032102 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0090304 GO:0140096 GO:1900424 GO:1900425 GO:1901360 GO:1901362 GO:1901483 GO:1901485 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-C3HC4 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

126

Amino Acids

14.04

Weight (kDa)

5.38

Isoelectric Point (pI)

55.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CHY PF05495 52 - 108 2.5e-12 CHY zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 317
AfiI CCNNNNNNNGG 4 cut(s) 78, 252, 328, 329
AluBI AGCT 3 cut(s) 24, 132, 151
AluI AGCT 3 cut(s) 24, 132, 151
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 180
Ama87I CYCGRG 1 cut(s) 157
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 157
AvaII GGWCC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 153
BauI CACGAG 1 cut(s) 226
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 325
BceAI ACGGC 2 cut(s) 111, 355
BcoDI GTCTC 1 cut(s) 180
BglII AGATCT 1 cut(s) 192
BisI GCNGC 2 cut(s) 314, 317
BlsI GCNGC 2 cut(s) 315, 318
Bme18I GGWCC 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 16
BmiI GGNNCC 2 cut(s) 18, 334
BmrI ACTGGG 1 cut(s) 317
BmsI GCATC 1 cut(s) 152
BmuI ACTGGG 1 cut(s) 317
BplI GAGNNNNNCTC 2 cut(s) 140, 172
BsaI GGTCTC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 144
Bsc4I CCNNNNNNNGG 4 cut(s) 78, 252, 328, 329
Bse1I ACTGG 1 cut(s) 323
Bse3DI GCAATG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 379
BseLI CCNNNNNNNGG 4 cut(s) 78, 252, 328, 329
BseMI GCAATG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 323
BseXI GCAGC 1 cut(s) 325
BseYI CCCAGC 1 cut(s) 20
BshFI GGCC 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 157
BsiSI CCGG 1 cut(s) 72
BslI CCNNNNNNNGG 4 cut(s) 78, 252, 328, 329
BsmAI GTCTC 1 cut(s) 180
BsnI GGCC 1 cut(s) 98
Bso31I GGTCTC 1 cut(s) 180
BsoBI CYCGRG 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 3 cut(s) 54, 192, 250
BspACI CCGC 1 cut(s) 317
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 146
BspLI GGNNCC 2 cut(s) 18, 334
BspTNI GGTCTC 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 193
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 3 cut(s) 54, 192, 250
BssSI CACGAG 1 cut(s) 226
Bst2BI CACGAG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 133
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 379
BstKTI GATC 3 cut(s) 57, 195, 253
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 3 cut(s) 54, 192, 250
BstMWI GCNNNNNNNGC 1 cut(s) 237
BstNSI RCATGY 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 325
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
BsuRI GGCC 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 1 cut(s) 379
Cfr13I GGNCC 1 cut(s) 16
CseI GACGC 1 cut(s) 37
CviAII CATG 2 cut(s) 232, 257
CviJI RGCY 7 cut(s) 24, 42, 98, 132, 151, 224, 316
CviKI_1 RGCY 7 cut(s) 24, 42, 98, 132, 151, 224, 316
DdeI CTNAG 1 cut(s) 133
DpnI GATC 3 cut(s) 56, 194, 252
DpnII GATC 3 cut(s) 54, 192, 250
Ecl136II GAGCTC 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 153
Eco31I GGTCTC 1 cut(s) 180
Eco32I GATATC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 16
Eco53kI GAGCTC 1 cut(s) 151
Eco88I CYCGRG 1 cut(s) 157
EcoICRI GAGCTC 1 cut(s) 151
EcoO109I RGGNCCY 1 cut(s) 16
EcoRV GATATC 1 cut(s) 139
EcoT38I GRGCYC 1 cut(s) 153
FaeI CATG 2 cut(s) 235, 260
FaiI YATR 2 cut(s) 233, 258
FatI CATG 2 cut(s) 231, 256
Fnu4HI GCNGC 2 cut(s) 314, 317
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 2 cut(s) 314, 317
GluI GCNGC 2 cut(s) 314, 317
GsaI CCCAGC 1 cut(s) 24
HaeIII GGCC 1 cut(s) 98
HapII CCGG 1 cut(s) 72
HgaI GACGC 1 cut(s) 37
Hin1II CATG 2 cut(s) 235, 260
HinfI GANTC 2 cut(s) 113, 169
HpaII CCGG 1 cut(s) 72
Hpy188I TCNGA 3 cut(s) 48, 112, 136
Hpy188III TCNNGA 1 cut(s) 159
Hpy99I CGWCG 2 cut(s) 31, 88
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4V TGCA 2 cut(s) 7, 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
HpyF3I CTNAG 1 cut(s) 133
Hsp92II CATG 2 cut(s) 235, 260
Kzo9I GATC 3 cut(s) 54, 192, 250
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 6 cut(s) 34, 52, 85, 136, 179, 336
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 1 cut(s) 152
MaeIII GTNAC 2 cut(s) 212, 302
MalI GATC 3 cut(s) 56, 194, 252
MboI GATC 3 cut(s) 54, 192, 250
MboII GAAGA 1 cut(s) 55
MflI RGATCY 1 cut(s) 192
MhlI GDGCHC 1 cut(s) 153
MnlI CCTC 3 cut(s) 54, 100, 364
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 1 cut(s) 230
MspI CCGG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 237
NdeII GATC 3 cut(s) 54, 192, 250
NlaIII CATG 2 cut(s) 235, 260
NlaIV GGNNCC 2 cut(s) 18, 334
NmuCI GTSAC 2 cut(s) 212, 302
NspI RCATGY 1 cut(s) 235
PaeR7I CTCGAG 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PfeI GAWTC 2 cut(s) 113, 169
PkrI GCNGC 2 cut(s) 315, 318
PpuMI RGGWCCY 1 cut(s) 16
Psp124BI GAGCTC 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 16
PspFI CCCAGC 1 cut(s) 20
PspN4I GGNNCC 2 cut(s) 18, 334
PspPI GGNCC 1 cut(s) 16
PspPPI RGGWCCY 1 cut(s) 16
PsuI RGATCY 1 cut(s) 192
RseI CAYNNNNRTG 1 cut(s) 230
SacI GAGCTC 1 cut(s) 153
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 2 cut(s) 314, 317
Sau3AI GATC 3 cut(s) 54, 192, 250
Sau96I GGNCC 1 cut(s) 16
SduI GDGCHC 1 cut(s) 153
SetI ASST 3 cut(s) 26, 134, 153
SfaNI GCATC 1 cut(s) 152
Sfr274I CTCGAG 1 cut(s) 157
SinI GGWCC 1 cut(s) 16
SlaI CTCGAG 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
SsiI CCGC 1 cut(s) 317
SstI GAGCTC 1 cut(s) 153
TaaI ACNGT 1 cut(s) 52
TaqI TCGA 3 cut(s) 26, 116, 158
TaqII GACCGA 1 cut(s) 162
TauI GCSGC 1 cut(s) 319
TfiI GAWTC 2 cut(s) 113, 169
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TseFI GTSAC 2 cut(s) 212, 302
TseI GCWGC 1 cut(s) 313
Tsp45I GTSAC 2 cut(s) 212, 302
TspDTI ATGAA 1 cut(s) 234
TspGWI ACGGA 2 cut(s) 161, 168
VpaK11BI GGWCC 1 cut(s) 16
XceI RCATGY 1 cut(s) 235
XhoI CTCGAG 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.