AT5G18670

Beta-amylase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
6225956 .. 6228195
2240 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G18670.1

Sequence Viewer

Length: 1611 bp
ATGGAAGTTTCAGTGATTGGAAATCCTCAAGCGAGGATCTGCAGAGCAGAATTAGCTTACAGAGAGCTTGGATTTAGATTTGGCTCTGATGTAATCTCCGGTGAATCGAGAAATAGGGTTAGTTTCTGCAACCAAAGCTCTAAATGGAAAGAGATCGCGATACGTTGCTCTTCGAGATCTGTCAAATGTGAAGCCATCGTCTCCGATGACGCTTCTCCGTTTCTCAAATCCACTCCAAAATCTAAATCGCTCGAGAGTGTAAAATTATTTGTTGGGCTTCCGTTAGACACAGTTTCAGACTGCAACAATGTGAATCACTTGAAAGCTATTACAGCTGGGCTTAAAGCTTTGAAGCTACTTGGTGTAGAAGGTATTGAGTTACCTATCTTTTGGGGAGTTGTTGAGAAAGAAGCTGCTGGGAAATATGAATGGTCTGGGTACTTGGCAGTAGCTGAGATTGTTAAGAAAGTGGGACTTAAGCTTCATGCTTCACTTTCTTTCCATGGATCGAAACAAACAGAGATAGGTCTTCCTGATTGGGTGGCAAAGATTGGTGATGCTGAACCAGGGATCTATTTTACAGATAGATATGGACAACAGTACAAAGATTGTTTGTCGTTTGCTGTTGATGATGTTCCTGTTCTTGATGGGAAGACTCCTATGGAGGTTTACAGAGGTTTCTGTGAGAGCTTCAAGTCTGCTTTCGCAGATTACATGGGCAACACAATCACGGGAATCACATTAGGTTTGGGACCAGACGGTGAGCTGAAATATCCTTCTCATCAACATAATGCCAAGCTCTCTGGCGCGGGAGAGTTCCAGTGTTACGACAAACACATGCTTTCTGCTCTTAAAGGCTACGCTGAATCCACTGGAAACCCTCTTTGGGGTCTCGGTGGTCCTCACGATGCTCCTGCTTACGATCAACAGCCTAATTCCTCTTCATTCTTCTCAGACGGCGGGTCATGGGAATCTCAGTACGGCGATTTCTTCTTGTCTTGGTATTCGTCTCTTCTCACCTCCCACGCAGACCGAGTCCTCTCCGTTGCTTCATCTGCATTTAGCGGGATTGGAGTGCCTCTATGTGGGAAGCTACCTCTCTTACACCAATGGCACAAGCTAAGATCTCATCCTTCTGAGTTAACAGCTGGATTCTACAGCTCTAATGGTCAGGACAGGTACGAGGCTATCGCAGAGATCTTTGCAAAGAACTCTTGTAGAATGATAATACCAGGAATGGACCTATCCGACGAGCACCAATCACCTGAATCTCTCTCGAGCCCCGAGTCATTACTTGGCCACATCAAAACTTCCTGCAAGAAACAAGGAGTCGTTGTCTCAGGGCAAAACTCATCCACCCCGGTTCCTGGTGGGTTTGAGAGGATCGTTGAGAATCTGAAGGATGAGAATGTAGGAATTGATCTGTTCACTTACCAGAGAATGGGAGCACTTTTCTTCTCTCCAGAGCATTTCCATGCTTTCACAGTCTTTGTCCGGAACCTGAGCCAATTCGAGTTGTCCTCAGACGATCAAGCCTCAGAGGCTGAGGTTGAGGCCGAGACAGCTAGCATAGGTTCAGGCACTGGTGCACCTAGTTTGCAAACCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

536

Amino Acids

58.28

Weight (kDa)

5.51

Isoelectric Point (pI)

31.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_14 PF01373 90 - 486 9.5e-91 Glycosyl hydrolase family 14
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013209)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1441
AccII CGCG 2 cut(s) 158, 809
AccIII TCCGGA 1 cut(s) 1494
AciI CCGC 4 cut(s) 809, 960, 1065, 1605
AclWI GGATC 4 cut(s) 44, 514, 578, 1391
AcoI YGGCCR 1 cut(s) 1297
AcuI CTGAAG 1 cut(s) 1418
AfaI GTAC 4 cut(s) 440, 602, 980, 1181
AfiI CCNNNNNNNGG 5 cut(s) 886, 887, 1085, 1367, 1441
AflII CTTAAG 1 cut(s) 476
AgsI TTSAA 3 cut(s) 322, 352, 694
AhdI GACNNNNNGTC 1 cut(s) 961
AjnI CCWGG 3 cut(s) 565, 1231, 1366
AjuI GAANNNNNNNTTGG 2 cut(s) 868, 900
Alw21I GWGCWC 3 cut(s) 1257, 1450, 1591
Alw26I GTCTC 5 cut(s) 205, 896, 1014, 1342, 1553
Alw44I GTGCAC 1 cut(s) 1587
AlwI GGATC 4 cut(s) 44, 514, 578, 1391
AlwNI CAGNNNCTG 3 cut(s) 452, 1544, 1583
Ama87I CYCGRG 3 cut(s) 251, 1276, 1283
Aor13HI TCCGGA 1 cut(s) 1494
AoxI GGCC 2 cut(s) 1297, 1554
ApaLI GTGCAC 1 cut(s) 1587
ApeKI GCWGC 1 cut(s) 413
AspLEI GCGC 1 cut(s) 809
AspS9I GGNCC 3 cut(s) 752, 899, 1240
AsuC2I CCSGG 1 cut(s) 1361
AsuHPI GGTGA 5 cut(s) 113, 566, 773, 1009, 1254
AsuNHI GCTAGC 1 cut(s) 1565
AvaI CYCGRG 3 cut(s) 251, 1276, 1283
AvaII GGWCC 3 cut(s) 752, 899, 1240
BaeGI GKGCMC 1 cut(s) 1591
BalI TGGCCA 1 cut(s) 1299
BanII GRGCYC 1 cut(s) 1283
BbsI GAAGAC 2 cut(s) 521, 659
Bbv12I GWGCWC 3 cut(s) 1257, 1450, 1591
BbvCI CCTCAGC 1 cut(s) 1545
BbvI GCAGC 1 cut(s) 400
BccI CCATC 2 cut(s) 203, 641
BceAI ACGGC 2 cut(s) 973, 997
BcgI CGANNNNNNTGC 2 cut(s) 896, 930
BciT130I CCWGG 3 cut(s) 567, 1233, 1368
BcnI CCSGG 1 cut(s) 1361
BcoDI GTCTC 5 cut(s) 205, 896, 1014, 1342, 1553
BfaI CTAG 2 cut(s) 1566, 1593
BfmI CTRYAG 2 cut(s) 40, 1156
BfrI CTTAAG 1 cut(s) 476
BglI GCCNNNNNGGC 1 cut(s) 1541
BglII AGATCT 3 cut(s) 176, 1124, 1197
BisI GCNGC 1 cut(s) 414
BlsI GCNGC 1 cut(s) 415
Bme1390I CCNGG 4 cut(s) 567, 1233, 1361, 1368
Bme18I GGWCC 3 cut(s) 752, 899, 1240
BmeRI GACNNNNNGTC 1 cut(s) 961
BmeT110I CYCGRG 3 cut(s) 251, 1276, 1283
BmgT120I GGNCC 3 cut(s) 752, 899, 1240
BmiI GGNNCC 3 cut(s) 753, 1365, 1499
BmrFI CCNGG 4 cut(s) 567, 1233, 1361, 1368
BmsI GCATC 2 cut(s) 547, 898
BmtI GCTAGC 1 cut(s) 1569
BpiI GAAGAC 2 cut(s) 521, 659
BplI GAGNNNNNCTC 2 cut(s) 1505, 1537
BpmI CTGGAG 1 cut(s) 1446
Bpu10I CCTNAGC 2 cut(s) 1502, 1545
BpuEI CTTGAG 1 cut(s) 12
BpuMI CCSGG 1 cut(s) 1361
BsaI GGTCTC 1 cut(s) 896
BsaJI CCNNGG 3 cut(s) 502, 566, 1359
BsaWI WCCGGW 2 cut(s) 98, 1494
BsaXI ACNNNNNCTCC 2 cut(s) 1320, 1350
Bsc4I CCNNNNNNNGG 5 cut(s) 886, 887, 1085, 1367, 1441
Bse1I ACTGG 3 cut(s) 820, 877, 1588
BseAI TCCGGA 1 cut(s) 1494
BseBI CCWGG 3 cut(s) 567, 1233, 1368
BseDI CCNNGG 3 cut(s) 502, 566, 1359
BseGI GGATG 3 cut(s) 1129, 1352, 1408
BseLI CCNNNNNNNGG 5 cut(s) 886, 887, 1085, 1367, 1441
BseMII CTCAG 9 cut(s) 444, 966, 989, 1128, 1353, 1493, 1536, 1536, 1551
BseNI ACTGG 3 cut(s) 820, 877, 1588
BseSI GKGCMC 1 cut(s) 1591
BseXI GCAGC 1 cut(s) 400
BseYI CCCAGC 2 cut(s) 335, 416
Bsh1236I CGCG 2 cut(s) 158, 809
BshFI GGCC 2 cut(s) 1299, 1556
BsiHKAI GWGCWC 3 cut(s) 1257, 1450, 1591
BsiHKCI CYCGRG 3 cut(s) 251, 1276, 1283
BsiSI CCGG 3 cut(s) 99, 1361, 1495
BslFI GGGAC 2 cut(s) 486, 765
BslI CCNNNNNNNGG 5 cut(s) 886, 887, 1085, 1367, 1441
BsmAI GTCTC 5 cut(s) 205, 896, 1014, 1342, 1553
BsmBI CGTCTC 2 cut(s) 205, 1014
BsmFI GGGAC 2 cut(s) 486, 765
BsnI GGCC 2 cut(s) 1299, 1556
Bso31I GGTCTC 1 cut(s) 896
BsoBI CYCGRG 3 cut(s) 251, 1276, 1283
Bsp1286I GDGCHC 4 cut(s) 1257, 1283, 1450, 1591
Bsp13I TCCGGA 1 cut(s) 1494
Bsp19I CCATGG 1 cut(s) 502
Bsp68I TCGCGA 1 cut(s) 158
BspACI CCGC 4 cut(s) 809, 960, 1065, 1605
BspANI GGCC 2 cut(s) 1299, 1556
BspCNI CTCAG 9 cut(s) 445, 965, 988, 1129, 1352, 1494, 1535, 1537, 1550
BspEI TCCGGA 1 cut(s) 1494
BspFNI CGCG 2 cut(s) 158, 809
BspLI GGNNCC 3 cut(s) 753, 1365, 1499
BspMAI CTGCAG 1 cut(s) 44
BspOI GCTAGC 1 cut(s) 1569
BspPI GGATC 4 cut(s) 44, 514, 578, 1391
BspQI GCTCTTC 1 cut(s) 175
BspTI CTTAAG 1 cut(s) 476
BspTNI GGTCTC 1 cut(s) 896
BsrI ACTGG 3 cut(s) 820, 877, 1588
BssECI CCNNGG 3 cut(s) 502, 566, 1359
BssT1I CCWWGG 1 cut(s) 502
Bst2UI CCWGG 3 cut(s) 567, 1233, 1368
Bst4CI ACNGT 4 cut(s) 292, 600, 761, 1486
Bst6I CTCTTC 3 cut(s) 175, 946, 1017
BstAFI CTTAAG 1 cut(s) 476
BstC8I GCNNGC 1 cut(s) 1567
BstDSI CCRYGG 1 cut(s) 502
BstF5I GGATG 3 cut(s) 1129, 1352, 1408
BstFNI CGCG 2 cut(s) 158, 809
BstHHI GCGC 1 cut(s) 809
BstMAI GTCTC 5 cut(s) 205, 896, 1014, 1342, 1553
BstMWI GCNNNNNNNGC 6 cut(s) 53, 135, 332, 1055, 1541, 1562
BstNI CCWGG 3 cut(s) 567, 1233, 1368
BstNSI RCATGY 1 cut(s) 841
BstSCI CCNGG 4 cut(s) 565, 1231, 1359, 1366
BstSFI CTRYAG 2 cut(s) 40, 1156
BstSLI GKGCMC 1 cut(s) 1591
BstUI CGCG 2 cut(s) 158, 809
BstV1I GCAGC 1 cut(s) 400
BstV2I GAAGAC 2 cut(s) 521, 659
BstX2I RGATCY 5 cut(s) 36, 176, 570, 1124, 1197
BstYI RGATCY 5 cut(s) 36, 176, 570, 1124, 1197
BsuRI GGCC 2 cut(s) 1299, 1556
BtgI CCRYGG 1 cut(s) 502
BtsCI GGATG 3 cut(s) 1129, 1352, 1408
BtsIMutI CAGTG 4 cut(s) 18, 827, 870, 1581
BtuMI TCGCGA 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 1567
CaiI CAGNNNCTG 3 cut(s) 452, 1544, 1583
CfoI GCGC 1 cut(s) 809
Cfr13I GGNCC 3 cut(s) 752, 899, 1240
CseI GACGC 1 cut(s) 218
Csp6I GTAC 4 cut(s) 439, 601, 979, 1180
CviAII CATG 6 cut(s) 485, 503, 715, 838, 966, 1475
CviQI GTAC 4 cut(s) 439, 601, 979, 1180
DriI GACNNNNNGTC 1 cut(s) 961
EaeI YGGCCR 1 cut(s) 1297
Eam1104I CTCTTC 3 cut(s) 175, 946, 1017
Eam1105I GACNNNNNGTC 1 cut(s) 961
EarI CTCTTC 3 cut(s) 175, 946, 1017
Eco130I CCWWGG 1 cut(s) 502
Eco24I GRGCYC 1 cut(s) 1283
Eco31I GGTCTC 1 cut(s) 896
Eco47I GGWCC 3 cut(s) 752, 899, 1240
Eco57I CTGAAG 1 cut(s) 1418
Eco88I CYCGRG 3 cut(s) 251, 1276, 1283
EcoRII CCWGG 3 cut(s) 565, 1231, 1366
EcoT14I CCWWGG 1 cut(s) 502
EcoT38I GRGCYC 1 cut(s) 1283
ErhI CCWWGG 1 cut(s) 502
Esp3I CGTCTC 2 cut(s) 205, 1014
FaeI CATG 6 cut(s) 488, 506, 718, 841, 969, 1478
FalI AAGNNNNNCTT 2 cut(s) 459, 491
FaqI GGGAC 2 cut(s) 486, 765
FatI CATG 6 cut(s) 484, 502, 714, 837, 965, 1474
FauI CCCGC 3 cut(s) 802, 953, 1058
Fnu4HI GCNGC 1 cut(s) 414
FokI GGATG 3 cut(s) 1116, 1339, 1415
FriOI GRGCYC 1 cut(s) 1283
Fsp4HI GCNGC 1 cut(s) 414
FspBI CTAG 2 cut(s) 1566, 1593
GlaI GCGC 1 cut(s) 808
GluI GCNGC 1 cut(s) 414
GsaI CCCAGC 2 cut(s) 339, 420
GsuI CTGGAG 1 cut(s) 1446
HaeIII GGCC 2 cut(s) 1299, 1556
HapII CCGG 3 cut(s) 99, 1361, 1495
HgaI GACGC 1 cut(s) 218
HhaI GCGC 1 cut(s) 809
Hin1II CATG 6 cut(s) 488, 506, 718, 841, 969, 1478
Hin6I GCGC 1 cut(s) 807
HinP1I GCGC 1 cut(s) 807
HincII GTYRAC 1 cut(s) 1143
HindII GTYRAC 1 cut(s) 1143
HindIII AAGCTT 2 cut(s) 345, 479
HpaI GTTAAC 1 cut(s) 1143
HpaII CCGG 3 cut(s) 99, 1361, 1495
HphI GGTGA 5 cut(s) 113, 566, 773, 1009, 1254
Hpy166II GTNNAC 4 cut(s) 670, 1143, 1428, 1589
Hpy188I TCNGA 9 cut(s) 88, 205, 298, 955, 1138, 1249, 1398, 1525, 1540
Hpy8I GTNNAC 4 cut(s) 670, 1143, 1428, 1589
Hpy99I CGWCG 1 cut(s) 1253
HpyAV CCTTC 4 cut(s) 362, 786, 1143, 1393
HpyCH4III ACNGT 4 cut(s) 292, 600, 761, 1486
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 8 cut(s) 42, 129, 303, 1058, 1205, 1317, 1589, 1600
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 135, 332, 1055, 1541, 1562
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 6 cut(s) 488, 506, 718, 841, 969, 1478
HspAI GCGC 1 cut(s) 807
Kpn2I TCCGGA 1 cut(s) 1494
KspAI GTTAAC 1 cut(s) 1143
LguI GCTCTTC 1 cut(s) 175
LmnI GCTCC 2 cut(s) 916, 1445
Lsp1109I GCAGC 1 cut(s) 400
LweI GCATC 2 cut(s) 547, 898
MaeI CTAG 2 cut(s) 1566, 1593
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 2 cut(s) 378, 824
MboII GAAGA 8 cut(s) 162, 521, 664, 933, 940, 982, 1004, 1447
MflI RGATCY 5 cut(s) 36, 176, 570, 1124, 1197
MhlI GDGCHC 4 cut(s) 1257, 1283, 1450, 1591
MlsI TGGCCA 1 cut(s) 1299
MluCI AATT 5 cut(s) 50, 263, 934, 1416, 1508
MluNI TGGCCA 1 cut(s) 1299
MlyI GAGTC 4 cut(s) 649, 1044, 1295, 1338
MmeI TCCRAC 1 cut(s) 1272
Mox20I TGGCCA 1 cut(s) 1299
MroI TCCGGA 1 cut(s) 1494
MscI TGGCCA 1 cut(s) 1299
MseI TTAA 6 cut(s) 342, 462, 477, 852, 1142, 1609
MslI CAYNNNNRTG 1 cut(s) 1473
Msp20I TGGCCA 1 cut(s) 1299
MspA1I CMGCKG 2 cut(s) 335, 1148
MspCI CTTAAG 1 cut(s) 476
MspI CCGG 3 cut(s) 99, 1361, 1495
MspR9I CCNGG 4 cut(s) 567, 1233, 1361, 1368
MvaI CCWGG 3 cut(s) 567, 1233, 1368
MvnI CGCG 2 cut(s) 158, 809
MwoI GCNNNNNNNGC 6 cut(s) 53, 135, 332, 1055, 1541, 1562
NciI CCSGG 1 cut(s) 1361
NcoI CCATGG 1 cut(s) 502
NheI GCTAGC 1 cut(s) 1565
NlaIII CATG 6 cut(s) 488, 506, 718, 841, 969, 1478
NlaIV GGNNCC 3 cut(s) 753, 1365, 1499
NmeAIII GCCGAG 1 cut(s) 1582
NruI TCGCGA 1 cut(s) 158
NspI RCATGY 1 cut(s) 841
PaeR7I CTCGAG 2 cut(s) 251, 1276
PciSI GCTCTTC 1 cut(s) 175
PfeI GAWTC 8 cut(s) 104, 313, 735, 866, 971, 1152, 1268, 1393
PflFI GACNNNGTC 1 cut(s) 1034
PflMI CCANNNNNTGG 1 cut(s) 1441
PkrI GCNGC 1 cut(s) 415
PleI GAGTC 4 cut(s) 649, 1043, 1294, 1337
PpsI GAGTC 4 cut(s) 649, 1043, 1294, 1337
Psp6I CCWGG 3 cut(s) 565, 1231, 1366
PspFI CCCAGC 2 cut(s) 335, 416
PspGI CCWGG 3 cut(s) 565, 1231, 1366
PspN4I GGNNCC 3 cut(s) 753, 1365, 1499
PspPI GGNCC 3 cut(s) 752, 899, 1240
PstI CTGCAG 1 cut(s) 44
PstNI CAGNNNCTG 3 cut(s) 452, 1544, 1583
PsuI RGATCY 5 cut(s) 36, 176, 570, 1124, 1197
PsyI GACNNNGTC 1 cut(s) 1034
PvuII CAGCTG 2 cut(s) 335, 1148
RruI TCGCGA 1 cut(s) 158
RsaI GTAC 4 cut(s) 440, 602, 980, 1181
RsaNI GTAC 4 cut(s) 439, 601, 979, 1180
RseI CAYNNNNRTG 1 cut(s) 1473
SapI GCTCTTC 1 cut(s) 175
SaqAI TTAA 6 cut(s) 342, 462, 477, 852, 1142, 1609
SatI GCNGC 1 cut(s) 414
Sau96I GGNCC 3 cut(s) 752, 899, 1240
SchI GAGTC 4 cut(s) 649, 1044, 1295, 1338
ScrFI CCNGG 4 cut(s) 567, 1233, 1361, 1368
SduI GDGCHC 4 cut(s) 1257, 1283, 1450, 1591
SfaNI GCATC 2 cut(s) 547, 898
SfcI CTRYAG 2 cut(s) 40, 1156
Sfr274I CTCGAG 2 cut(s) 251, 1276
SinI GGWCC 3 cut(s) 752, 899, 1240
SlaI CTCGAG 2 cut(s) 251, 1276
SmiMI CAYNNNNRTG 1 cut(s) 1473
SmlI CTYRAG 4 cut(s) 27, 251, 476, 1276
SmoI CTYRAG 4 cut(s) 27, 251, 476, 1276
Sse9I AATT 5 cut(s) 50, 263, 934, 1416, 1508
SsiI CCGC 4 cut(s) 809, 960, 1065, 1605
SspMI CTAG 2 cut(s) 1566, 1593
StyD4I CCNGG 4 cut(s) 565, 1231, 1359, 1366
StyI CCWWGG 1 cut(s) 502
TaaI ACNGT 4 cut(s) 292, 600, 761, 1486
TaiI ACGT 1 cut(s) 166
TaqI TCGA 6 cut(s) 107, 173, 252, 509, 1277, 1512
TaqII GACCGA 1 cut(s) 1047
TasI AATT 5 cut(s) 50, 263, 934, 1416, 1508
TatI WGTACW 1 cut(s) 600
TfiI GAWTC 8 cut(s) 104, 313, 735, 866, 971, 1152, 1268, 1393
Tru1I TTAA 6 cut(s) 342, 462, 477, 852, 1142, 1609
Tru9I TTAA 6 cut(s) 342, 462, 477, 852, 1142, 1609
TscAI CASTG 4 cut(s) 18, 827, 877, 1588
TseI GCWGC 1 cut(s) 413
TspDTI ATGAA 4 cut(s) 441, 473, 933, 1041
TspGWI ACGGA 3 cut(s) 207, 270, 1033
TspRI CASTG 4 cut(s) 18, 827, 877, 1588
Tth111I GACNNNGTC 1 cut(s) 1034
Van91I CCANNNNNTGG 1 cut(s) 1441
Vha464I CTTAAG 1 cut(s) 476
VneI GTGCAC 1 cut(s) 1587
VpaK11BI GGWCC 3 cut(s) 752, 899, 1240
XceI RCATGY 1 cut(s) 841
XhoI CTCGAG 2 cut(s) 251, 1276
XspI CTAG 2 cut(s) 1566, 1593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.