RLG00000007716

Beta-amylase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
20279568 .. 20281711
2144 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007716

Sequence Viewer

Length: 1593 bp
ATGGAGGTTTCTGTGGTTCGAAGCTCTCAGGTGAGGATTGGAAGGGCTGAATTGAGGCACAGGGAGTTGGGGTTTTGTAAATTGAGTGGTAATTTGAGGACCCAGATAAGCTTTGGTCAAAACACGAGCTGGAAGAATGGCCGGCTTCAGTTTACTCTCAGGGCCGTTCAGTCTGAGTCGGTTCGACCCGTTGAAGCTTCGGGTCCATCCAAAAGATCCAAATCGAATGACGGGTTAAGACTATTCGTTGGGTTGCCCCTGGATGCAGTTTCAGACTGCAATTCGGTGAAGCATGCCCGAGCAATTGCGGTTGGACTAAAGGCTCTGAAGCTATTGGGAGTGACAGGCGTGGAGCTTCCTGTCTGGTGGGGAATTGTTGAGAAAGAAGCCATGGGGAAGTATGAGTGGTCCGCCTACCATTCTCTAGCAGAGCTGGTTCAGATAGCCGGTCTTGAGCTTCATGTGTCACTCTGCTTCCACGCTTCTAAACAACCGAAAATCTCACTCCCCGATTGGGTGTCTTGCTTAGGGGAGTCCCAACCTGGTATGTTTTTCAAAGACAGGTCAGGGCAGCAATACAAGGAGTGTTTATCACTGGCTGTTGATGAGCTTCCTGTTCTTAATGGAAAGACTCCGATTCAAGTTTACCATGATTTCTGCGAAAGCTTTAAAGCTTCGTTCTCACCTTTCCTTGGTTCCACAATCACGGGCATCTCAGTGAGCCTAGGACCAGATGGTGAGCTTCGGTATCCTTCTCATCACCAGTCAGTCAAACGTAGCAAAATTCCCGGGGTTGGCGAATTCCAATGTTTTGATGAAAACATGCTCAGTGTTCTTAAACAACATGCTGAGGCAACCGGAAATCCTTTATGGGGTCTTGGCGGTCCCCATGATGCTCCAAGCTATGACCAGTCACCGGACTCAAACACTTTCTTCAAGGACCATGGGGGATCATGGGAGTCACCATATGGTGATTTCTTCCTGTCCTGGTACTCAAACCAGCTAATTTCTCATGGAGATCGGATCCTTTCCCTTGCTTCTTCAACTTTTGGTGACACAGAAGTCACAGTATATGGCAAAGTCCCTCTAATGCACTCTTGGTACAAAACAAGGTCTCACCCATCCGAGTTGACATCTGGATTTTATAATACATCCTCTCGAGATGGTTATGAAGCAGTTGCAGATATGTTTGCAAGAAACTCCTGCAAAATGATATTGCCGGGACTGGACTTATCAGATGTACATCAACCACACGAATCCCGTTCTAGTCCCGAGTCATTACTATCACAAATTAGAACAGCGTGCAAAAAGCACGGAATTGAAATTTCTGGTCAAAACTCATCAATTTCAGGAGCTCCAGGAGGCTTTCAACAGATAAAGAAGAACTTGTTAGGAGAGAATAAAATAGACTTGTTCACTTACCAGAGAATGGGAGCTTATTTCTTCTCACCTGAGCACTTTCCTTCATTTTCTGGATTTGTCCGAAGCCTTAATCAAGTGGAATTGCAGTCAGATGATCTAGCTTCTGACGAAGAAGCTACTGAATCTATTCATGTCAACTCAGAACCAGGAATCCACATGCAAGCCGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

531

Amino Acids

58.46

Weight (kDa)

6.29

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_14 PF01373 82 - 482 6.1e-95 Glycosyl hydrolase family 14
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013209)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1146
AasI GACNNNNNNGTC 1 cut(s) 1061
AccB7I CCANNNNNTGG 1 cut(s) 1429
AciI CCGC 4 cut(s) 308, 411, 882, 1587
AclWI GGATC 4 cut(s) 210, 958, 1018, 1031
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 3 cut(s) 783, 800, 1323
AcuI CTGAAG 2 cut(s) 131, 347
AfaI GTAC 3 cut(s) 992, 1103, 1242
AfiI CCNNNNNNNGG 6 cut(s) 514, 692, 794, 872, 916, 1429
AgsI TTSAA 7 cut(s) 194, 556, 641, 937, 1044, 1322, 1370
AjnI CCWGG 5 cut(s) 258, 541, 986, 1357, 1567
AloI GAACNNNNNNTCC 2 cut(s) 1557, 1589
Alw21I GWGCWC 2 cut(s) 1357, 1458
Alw26I GTCTC 1 cut(s) 1119
AlwI GGATC 4 cut(s) 210, 958, 1018, 1031
Ama87I CYCGRG 4 cut(s) 297, 788, 1158, 1271
AoxI GGCC 2 cut(s) 139, 162
ApeKI GCWGC 1 cut(s) 571
ApoI RAATTY 3 cut(s) 783, 800, 1323
Asp700I GAANNNNTTC 1 cut(s) 1548
AspA2I CCTAGG 1 cut(s) 724
AspS9I GGNCC 7 cut(s) 99, 162, 203, 408, 728, 884, 940
AsuC2I CCSGG 3 cut(s) 789, 790, 1221
AsuII TTCGAA 1 cut(s) 19
AvaI CYCGRG 4 cut(s) 297, 788, 1158, 1271
AvaII GGWCC 6 cut(s) 99, 203, 408, 728, 884, 940
AvrII CCTAGG 1 cut(s) 724
BamHI GGATCC 1 cut(s) 1023
BanII GRGCYC 1 cut(s) 1357
BauI CACGAG 1 cut(s) 124
Bbv12I GWGCWC 2 cut(s) 1357, 1458
BbvCI CCTCAGC 1 cut(s) 849
BbvI GCAGC 1 cut(s) 583
BccI CCATC 4 cut(s) 214, 728, 1129, 1157
BceAI ACGGC 1 cut(s) 149
BciT130I CCWGG 5 cut(s) 260, 543, 988, 1359, 1569
BciVI GTATCC 1 cut(s) 759
BcnI CCSGG 3 cut(s) 789, 790, 1221
BcoDI GTCTC 1 cut(s) 1119
BfaI CTAG 4 cut(s) 425, 725, 1266, 1520
BfuI GTATCC 1 cut(s) 759
BisI GCNGC 2 cut(s) 572, 1587
BlnI CCTAGG 1 cut(s) 724
BlsI GCNGC 2 cut(s) 573, 1588
Bme1390I CCNGG 8 cut(s) 260, 543, 789, 790, 988, 1221, 1359, 1569
Bme18I GGWCC 6 cut(s) 99, 203, 408, 728, 884, 940
BmeT110I CYCGRG 4 cut(s) 297, 788, 1158, 1271
BmgT120I GGNCC 7 cut(s) 99, 162, 203, 408, 728, 884, 940
BmiI GGNNCC 5 cut(s) 101, 204, 697, 886, 1025
BmrFI CCNGG 8 cut(s) 260, 543, 789, 790, 988, 1221, 1359, 1569
BmsI GCATC 3 cut(s) 253, 720, 883
BpmI CTGGAG 1 cut(s) 1341
Bpu10I CCTNAGC 3 cut(s) 526, 849, 1452
Bpu14I TTCGAA 1 cut(s) 19
BpuEI CTTGAG 1 cut(s) 473
BpuMI CCSGG 3 cut(s) 789, 790, 1221
BsaBI GATNNNNATC 2 cut(s) 220, 1242
BsaI GGTCTC 1 cut(s) 1119
BsaJI CCNNGG 7 cut(s) 258, 390, 691, 724, 788, 789, 943
BsaWI WCCGGW 2 cut(s) 857, 916
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 6 cut(s) 514, 692, 794, 872, 916, 1429
Bse118I RCCGGY 2 cut(s) 141, 446
Bse1I ACTGG 4 cut(s) 600, 763, 910, 1230
Bse8I GATNNNNATC 2 cut(s) 220, 1242
BseBI CCWGG 5 cut(s) 260, 543, 988, 1359, 1569
BseDI CCNNGG 7 cut(s) 258, 390, 691, 724, 788, 789, 943
BseGI GGATG 4 cut(s) 206, 268, 1121, 1151
BseJI GATNNNNATC 2 cut(s) 220, 1242
BseLI CCNNNNNNNGG 6 cut(s) 514, 692, 794, 872, 916, 1429
BseMII CTCAG 8 cut(s) 41, 165, 172, 729, 840, 841, 1443, 1575
BseNI ACTGG 4 cut(s) 600, 763, 910, 1230
BseXI GCAGC 1 cut(s) 583
BshFI GGCC 2 cut(s) 141, 164
BsiHKAI GWGCWC 2 cut(s) 1357, 1458
BsiHKCI CYCGRG 4 cut(s) 297, 788, 1158, 1271
BsiSI CCGG 6 cut(s) 142, 447, 789, 858, 917, 1220
BslFI GGGAC 5 cut(s) 520, 870, 1067, 1236, 1254
BslI CCNNNNNNNGG 6 cut(s) 514, 692, 794, 872, 916, 1429
BsmAI GTCTC 1 cut(s) 1119
BsmFI GGGAC 5 cut(s) 520, 870, 1067, 1236, 1254
BsnI GGCC 2 cut(s) 141, 164
Bso31I GGTCTC 1 cut(s) 1119
BsoBI CYCGRG 4 cut(s) 297, 788, 1158, 1271
Bsp119I TTCGAA 1 cut(s) 19
Bsp1286I GDGCHC 2 cut(s) 1357, 1458
Bsp1407I TGTACA 1 cut(s) 1240
Bsp143I GATC 5 cut(s) 215, 950, 1018, 1023, 1516
Bsp19I CCATGG 2 cut(s) 390, 943
BspACI CCGC 4 cut(s) 308, 411, 882, 1587
BspANI GGCC 2 cut(s) 141, 164
BspCNI CTCAG 8 cut(s) 40, 166, 171, 728, 840, 841, 1444, 1574
BspLI GGNNCC 5 cut(s) 101, 204, 697, 886, 1025
BspPI GGATC 4 cut(s) 210, 958, 1018, 1031
BspT104I TTCGAA 1 cut(s) 19
BspTNI GGTCTC 1 cut(s) 1119
BsrFI RCCGGY 2 cut(s) 141, 446
BsrGI TGTACA 1 cut(s) 1240
BsrI ACTGG 4 cut(s) 600, 763, 910, 1230
BssAI RCCGGY 2 cut(s) 141, 446
BssECI CCNNGG 7 cut(s) 258, 390, 691, 724, 788, 789, 943
BssMI GATC 5 cut(s) 215, 950, 1018, 1023, 1516
BssSI CACGAG 1 cut(s) 124
BssT1I CCWWGG 4 cut(s) 390, 691, 724, 943
Bst2BI CACGAG 1 cut(s) 124
Bst2UI CCWGG 5 cut(s) 260, 543, 988, 1359, 1569
Bst4CI ACNGT 1 cut(s) 1069
BstAUI TGTACA 1 cut(s) 1240
BstBI TTCGAA 1 cut(s) 19
BstC8I GCNNGC 4 cut(s) 143, 294, 1303, 1584
BstDSI CCRYGG 2 cut(s) 390, 943
BstF5I GGATG 4 cut(s) 206, 268, 1121, 1151
BstKTI GATC 5 cut(s) 218, 953, 1021, 1026, 1519
BstMAI GTCTC 1 cut(s) 1119
BstMBI GATC 5 cut(s) 215, 950, 1018, 1023, 1516
BstNI CCWGG 5 cut(s) 260, 543, 988, 1359, 1569
BstNSI RCATGY 4 cut(s) 296, 826, 848, 1582
BstSCI CCNGG 8 cut(s) 258, 541, 787, 788, 986, 1219, 1357, 1567
BstV1I GCAGC 1 cut(s) 583
BstX2I RGATCY 2 cut(s) 215, 1023
BstYI RGATCY 2 cut(s) 215, 1023
BsuI GTATCC 1 cut(s) 759
BsuRI GGCC 2 cut(s) 141, 164
BtgI CCRYGG 2 cut(s) 390, 943
BtsCI GGATG 4 cut(s) 206, 268, 1121, 1151
BtsIMutI CAGTG 3 cut(s) 593, 723, 835
Cac8I GCNNGC 4 cut(s) 143, 294, 1303, 1584
Cfr10I RCCGGY 2 cut(s) 141, 446
Cfr13I GGNCC 7 cut(s) 99, 162, 203, 408, 728, 884, 940
Cfr9I CCCGGG 1 cut(s) 788
CsiI ACCWGGT 1 cut(s) 541
Csp6I GTAC 3 cut(s) 991, 1102, 1241
CviQI GTAC 3 cut(s) 991, 1102, 1241
DpnI GATC 5 cut(s) 217, 952, 1020, 1025, 1518
DpnII GATC 5 cut(s) 215, 950, 1018, 1023, 1516
DraI TTTAAA 1 cut(s) 670
DrdI GACNNNNNNGTC 1 cut(s) 1061
DseDI GACNNNNNNGTC 1 cut(s) 1061
EaeI YGGCCR 1 cut(s) 139
EciI GGCGGA 1 cut(s) 400
Ecl136II GAGCTC 1 cut(s) 1355
Eco130I CCWWGG 4 cut(s) 390, 691, 724, 943
Eco24I GRGCYC 1 cut(s) 1357
Eco31I GGTCTC 1 cut(s) 1119
Eco47I GGWCC 6 cut(s) 99, 203, 408, 728, 884, 940
Eco53kI GAGCTC 1 cut(s) 1355
Eco57I CTGAAG 2 cut(s) 131, 347
Eco88I CYCGRG 4 cut(s) 297, 788, 1158, 1271
EcoICRI GAGCTC 1 cut(s) 1355
EcoO109I RGGNCCY 1 cut(s) 99
EcoRI GAATTC 1 cut(s) 800
EcoRII CCWGG 5 cut(s) 258, 541, 986, 1357, 1567
EcoT14I CCWWGG 4 cut(s) 390, 691, 724, 943
EcoT38I GRGCYC 1 cut(s) 1357
ErhI CCWWGG 4 cut(s) 390, 691, 724, 943
FalI AAGNNNNNCTT 2 cut(s) 1370, 1402
FaqI GGGAC 5 cut(s) 520, 870, 1067, 1236, 1254
FauNDI CATATG 1 cut(s) 967
Fnu4HI GCNGC 2 cut(s) 572, 1587
FokI GGATG 4 cut(s) 193, 275, 1108, 1138
FriOI GRGCYC 1 cut(s) 1357
Fsp4HI GCNGC 2 cut(s) 572, 1587
FspBI CTAG 4 cut(s) 425, 725, 1266, 1520
GluI GCNGC 2 cut(s) 572, 1587
GsuI CTGGAG 1 cut(s) 1341
HaeIII GGCC 2 cut(s) 141, 164
HapII CCGG 6 cut(s) 142, 447, 789, 858, 917, 1220
HincII GTYRAC 2 cut(s) 1131, 1558
HindII GTYRAC 2 cut(s) 1131, 1558
HindIII AAGCTT 4 cut(s) 109, 195, 664, 672
HpaII CCGG 6 cut(s) 142, 447, 789, 858, 917, 1220
Hpy166II GTNNAC 5 cut(s) 153, 646, 1131, 1416, 1558
Hpy188III TCNNGA 7 cut(s) 452, 1137, 1158, 1160, 1271, 1350, 1473
Hpy8I GTNNAC 5 cut(s) 153, 646, 1131, 1416, 1558
HpyAV CCTTC 3 cut(s) 36, 762, 1473
HpyCH4III ACNGT 1 cut(s) 1069
HpyCH4IV ACGT 1 cut(s) 775
HpyCH4V TGCA 9 cut(s) 266, 279, 1093, 1181, 1193, 1206, 1305, 1507, 1582
HpySE526I ACGT 1 cut(s) 775
KroI GCCGGC 1 cut(s) 141
KroNI GCCGGC 1 cut(s) 143
Kzo9I GATC 5 cut(s) 215, 950, 1018, 1023, 1516
LmnI GCTCC 5 cut(s) 352, 901, 1352, 1360, 1433
Lsp1109I GCAGC 1 cut(s) 583
LweI GCATC 3 cut(s) 253, 720, 883
MabI ACCWGGT 1 cut(s) 541
MaeI CTAG 4 cut(s) 425, 725, 1266, 1520
MaeII ACGT 1 cut(s) 775
MaeIII GTNAC 6 cut(s) 340, 465, 912, 960, 1052, 1063
MalI GATC 5 cut(s) 217, 952, 1020, 1025, 1518
MboI GATC 5 cut(s) 215, 950, 1018, 1023, 1516
MboII GAAGA 7 cut(s) 145, 925, 970, 1032, 1393, 1435, 1544
MfeI CAATTG 1 cut(s) 303
MflI RGATCY 2 cut(s) 215, 1023
MhlI GDGCHC 2 cut(s) 1357, 1458
MlyI GAGTC 6 cut(s) 185, 542, 625, 914, 968, 1283
MmeI TCCRAC 1 cut(s) 292
MnlI CCTC 7 cut(s) 27, 48, 90, 844, 1095, 1165, 1355
MroNI GCCGGC 1 cut(s) 141
MroXI GAANNNNTTC 1 cut(s) 1548
MseI TTAA 5 cut(s) 236, 621, 669, 837, 1491
MslI CAYNNNNRTG 1 cut(s) 716
MspI CCGG 6 cut(s) 142, 447, 789, 858, 917, 1220
MspR9I CCNGG 8 cut(s) 260, 543, 789, 790, 988, 1221, 1359, 1569
MunI CAATTG 1 cut(s) 303
MvaI CCWGG 5 cut(s) 260, 543, 988, 1359, 1569
NaeI GCCGGC 1 cut(s) 143
NciI CCSGG 3 cut(s) 789, 790, 1221
NcoI CCATGG 2 cut(s) 390, 943
NdeI CATATG 1 cut(s) 967
NdeII GATC 5 cut(s) 215, 950, 1018, 1023, 1516
NgoMIV GCCGGC 1 cut(s) 141
NlaIV GGNNCC 5 cut(s) 101, 204, 697, 886, 1025
NmuCI GTSAC 6 cut(s) 340, 465, 912, 960, 1052, 1063
NspI RCATGY 4 cut(s) 296, 826, 848, 1582
NspV TTCGAA 1 cut(s) 19
PaeI GCATGC 1 cut(s) 296
PaeR7I CTCGAG 1 cut(s) 1158
PdiI GCCGGC 1 cut(s) 143
PdmI GAANNNNTTC 1 cut(s) 1548
PfeI GAWTC 4 cut(s) 637, 1256, 1544, 1572
PflMI CCANNNNNTGG 1 cut(s) 1429
PfoI TCCNGGA 1 cut(s) 1357
PkrI GCNGC 2 cut(s) 573, 1588
PleI GAGTC 6 cut(s) 184, 541, 625, 914, 967, 1282
PpsI GAGTC 6 cut(s) 184, 541, 625, 914, 967, 1282
PpuMI RGGWCCY 1 cut(s) 99
PsiI TTATAA 1 cut(s) 1146
Psp124BI GAGCTC 1 cut(s) 1357
Psp5II RGGWCCY 1 cut(s) 99
Psp6I CCWGG 5 cut(s) 258, 541, 986, 1357, 1567
PspGI CCWGG 5 cut(s) 258, 541, 986, 1357, 1567
PspN4I GGNNCC 5 cut(s) 101, 204, 697, 886, 1025
PspPI GGNCC 7 cut(s) 99, 162, 203, 408, 728, 884, 940
PspPPI RGGWCCY 1 cut(s) 99
PsuI RGATCY 2 cut(s) 215, 1023
RsaI GTAC 3 cut(s) 992, 1103, 1242
RsaNI GTAC 3 cut(s) 991, 1102, 1241
RseI CAYNNNNRTG 1 cut(s) 716
SacI GAGCTC 1 cut(s) 1357
SaqAI TTAA 5 cut(s) 236, 621, 669, 837, 1491
SatI GCNGC 2 cut(s) 572, 1587
Sau3AI GATC 5 cut(s) 215, 950, 1018, 1023, 1516
Sau96I GGNCC 7 cut(s) 99, 162, 203, 408, 728, 884, 940
SchI GAGTC 6 cut(s) 185, 542, 625, 914, 968, 1283
ScrFI CCNGG 8 cut(s) 260, 543, 789, 790, 988, 1221, 1359, 1569
SduI GDGCHC 2 cut(s) 1357, 1458
SexAI ACCWGGT 1 cut(s) 541
SfaNI GCATC 3 cut(s) 253, 720, 883
Sfr274I CTCGAG 1 cut(s) 1158
SfuI TTCGAA 1 cut(s) 19
SinI GGWCC 6 cut(s) 99, 203, 408, 728, 884, 940
SlaI CTCGAG 1 cut(s) 1158
SmaI CCCGGG 1 cut(s) 790
SmiMI CAYNNNNRTG 1 cut(s) 716
SmlI CTYRAG 2 cut(s) 452, 1158
SmoI CTYRAG 2 cut(s) 452, 1158
SphI GCATGC 1 cut(s) 296
SsiI CCGC 4 cut(s) 308, 411, 882, 1587
SspMI CTAG 4 cut(s) 425, 725, 1266, 1520
SstI GAGCTC 1 cut(s) 1357
StyD4I CCNGG 8 cut(s) 258, 541, 787, 788, 986, 1219, 1357, 1567
StyI CCWWGG 4 cut(s) 390, 691, 724, 943
TaaI ACNGT 1 cut(s) 1069
TaiI ACGT 1 cut(s) 778
TaqI TCGA 4 cut(s) 19, 184, 224, 1159
TatI WGTACW 1 cut(s) 1240
TauI GCSGC 1 cut(s) 1589
TfiI GAWTC 4 cut(s) 637, 1256, 1544, 1572
Tru1I TTAA 5 cut(s) 236, 621, 669, 837, 1491
Tru9I TTAA 5 cut(s) 236, 621, 669, 837, 1491
TscAI CASTG 3 cut(s) 600, 723, 835
TseFI GTSAC 6 cut(s) 340, 465, 912, 960, 1052, 1063
TseI GCWGC 1 cut(s) 571
Tsp45I GTSAC 6 cut(s) 340, 465, 912, 960, 1052, 1063
TspDTI ATGAA 5 cut(s) 449, 831, 1185, 1455, 1541
TspGWI ACGGA 1 cut(s) 1329
TspMI CCCGGG 1 cut(s) 788
TspRI CASTG 3 cut(s) 600, 723, 835
Van91I CCANNNNNTGG 1 cut(s) 1429
VpaK11BI GGWCC 6 cut(s) 99, 203, 408, 728, 884, 940
XapI RAATTY 3 cut(s) 783, 800, 1323
XceI RCATGY 4 cut(s) 296, 826, 848, 1582
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
XhoI CTCGAG 1 cut(s) 1158
XmaI CCCGGG 1 cut(s) 788
XmaJI CCTAGG 1 cut(s) 724
XmnI GAANNNNTTC 1 cut(s) 1548
XspI CTAG 4 cut(s) 425, 725, 1266, 1520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.