Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001548

Physical Location & Seq

Genomic Coordinates Forward (+)

29458974 .. 29466832

Gene Structure 7859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0167500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGTACCCTTCATCCTCATCATCCTCGTCCCAAAAGCCCATGGGCCCAAGCCCAACCGGCATCACCCGCTACGGCTCAGCTCCGGGCTCCCTCCTCACCTCCGCCGTCGACTCCGTCATTGGAGCAGTCGCCGAGCGTGAATTCTCCGCCCTCCGACCTGCTTCCTTCGTCGGCCGATACTTCTCCGGCGGCGGCGGCGCAGACGGCGACTCCTCCTCCCTCACCTCCGAGTCAACCTTCAAAGTCAACCCATCCAACGCTAACAAGGAGGCCACGAAGCCGCTGCCCAGATCGTACGGTTTGGGCGAGATGGCGGCCGCGATTGGATCTTCTTCTTCTACCTCGTGTTCTTCCTCGGCTTTGGTTCGCCAGAGAAGCTCTCCAGCTGGCTTCCCGAGCCATCTCACTGACAACAATGGATTTTCAGTTACACGGGGAAGTGGAAGCTATAGCTCACAAGGTGGGCCTAATGGTGGCCATGGAGGAACAAGGTTGAAGTCCCAGTTGAGCTTCACTAGGCAAGATTCTCTTTCTCAAATCTCTGAAGTTAGTGAAAATGCTGTCGAAGGTGTTAGCTCTACCAGTGGCCAACATAGTGCCATGCATTCTTATCCTGCTAGTAGCTTTGGGATGGACTCCTGGGATAATACCAATTCTATTGTCTTTTCTGCTCCAACAAGTAAACGAGCTAAAAATATGGATGGTGACATATTTAACTGCCTCAATACCTTAGAATCTCAGTTTAGCCTGCCCCAGACAACTTTAGAAATGGCAACAGTGGAGAAGCTACTACACATCCCTGAAGATTCAGTTCCTTGCAAAATCCGTGCTAAGCGTGGCTGTGCAACTCATCCCAGAAGCATTGCTGAGAGGGAGAGAAGAACTAGAATAAGTGGGAAGTTAAAGAAACTGCAAGACCTTGTCCCTAACATGGATAAGCAAACAAGCTATGCAGACATGTTGGATTTGGCTGTGCAACATATCAAGGGTCTACAAAATCAAGTCCAGAATCTTCACAAAGATCTTGAAGGTTGCACTTGCGGCTGCAAACCCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

352

Amino Acids

37.15

Weight (kDa)

8.78

Isoelectric Point (pI)

53.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	287 - 332	3.8e-09	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54610 AT1G54610 AT1G54610 AT3G05050 AT3G05050 AT3G05050
fragaria_vesca	FvH4_4g17190 FvH4_4g17190 FvH4_4g17190 FvH4_4g17190 FvH4_6g04100 FvH4_6g04100 FvH4_6g04100 FvH4_6g04100 FvH4_6g04100
malus_domestica	MD02G1048200.v1.1 MD04G1216500.v1.1 MD12G1233100.v1.1 MD13G1173900.v1.1 MD16G1175000.v1.1
prunus_persica	Prupe.1G142100_v2.0.a1 Prupe.1G142100_v2.0.a1 Prupe.6G336200_v2.0.a1 Prupe.6G336200_v2.0.a1
pyrus_communis	pycom04g19240 pycom12g21560
rosa_chinensis	RchiOBHm_Chr3g0452651 RchiOBHm_Chr4g0420991
rosa_laevigata	RLG00000007715 RLG00000025575
rosa_multiflora	Rmu_sc0006508.1_g000002 Rmu_ssc0000156.1_g000011
rosa_roxburghii	Rroxscaffold_5G00363340 Rroxscaffold_6G00429690
rosa_rugosa	Rorug02G0642200 Rorug02G0642300 Rorug02G0642300 Rorug02G0642400 Rorug04G0167500 Rorug04G0167500
rosa_samantha	Rh3AG044600 Rh3BG046900 Rh3CG045400 Rh3DG045800 Rh4AG229000 Rh4BG232000 Rh4CG243600 Rh4DG227400
rosa_wichuraiana	Rw3G003480 Rw4G019800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	166
AccI	GTMKAC	2 cut(s)	108, 991
AccII	CGCG	1 cut(s)	320
AclWI	GGATC	1 cut(s)	334
AcoI	YGGCCR	4 cut(s)	172, 315, 475, 586
AcsI	RAATTY	1 cut(s)	140
AcuI	CTGAAG	2 cut(s)	564, 822
AdeI	CACNNNGTG	1 cut(s)	461
AfaI	GTAC	2 cut(s)	5, 296
AfiI	CCNNNNNNNGG	2 cut(s)	473, 931
AflIII	ACRYGT	1 cut(s)	957
AgsI	TTSAA	3 cut(s)	241, 496, 1028
AjnI	CCWGG	1 cut(s)	638
AlwI	GGATC	1 cut(s)	334
Ama87I	CYCGRG	1 cut(s)	394
AoxI	GGCC	7 cut(s)	43, 172, 270, 315, 464, 475, 586
ApaI	GGGCCC	1 cut(s)	47
ApeKI	GCWGC	2 cut(s)	283, 1044
ApoI	RAATTY	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	3 cut(s)	43, 44, 464
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	4 cut(s)	55, 88, 214, 716
AvaI	CYCGRG	1 cut(s)	394
BaeGI	GKGCMC	1 cut(s)	47
BalI	TGGCCA	2 cut(s)	477, 588
BanII	GRGCYC	2 cut(s)	47, 89
BauI	CACGAG	1 cut(s)	343
BbvI	GCAGC	2 cut(s)	270, 1031
BccI	CCATC	5 cut(s)	259, 304, 408, 625, 695
BceAI	ACGGC	3 cut(s)	88, 89, 220
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciT130I	CCWGG	1 cut(s)	640
BcnI	CCSGG	1 cut(s)	84
BfaI	CTAG	3 cut(s)	516, 618, 885
BfmI	CTRYAG	1 cut(s)	448
BfuAI	ACCTGC	1 cut(s)	166
BglI	GCCNNNNNGGC	1 cut(s)	57
BglII	AGATCT	1 cut(s)	1021
BisI	GCNGC	9 cut(s)	190, 193, 196, 281, 284, 315, 318, 1042, 1045
BlpI	GCTNAGC	2 cut(s)	76, 831
BlsI	GCNGC	9 cut(s)	191, 194, 197, 282, 285, 316, 319, 1043, 1046
Bme1390I	CCNGG	2 cut(s)	84, 640
BmeT110I	CYCGRG	1 cut(s)	394
BmgT120I	GGNCC	3 cut(s)	43, 44, 464
BmiI	GGNNCC	2 cut(s)	45, 88
BmrFI	CCNGG	2 cut(s)	84, 640
BmrI	ACTGGG	1 cut(s)	496
BmsI	GCATC	1 cut(s)	69
BmuI	ACTGGG	1 cut(s)	496
BplI	GAGNNNNNCTC	2 cut(s)	364, 396
BpmI	CTGGAG	1 cut(s)	366
Bpu1102I	GCTNAGC	2 cut(s)	76, 831
BpuMI	CCSGG	1 cut(s)	84
BsaJI	CCNNGG	4 cut(s)	39, 354, 478, 639
BsaXI	ACNNNNNCTCC	4 cut(s)	194, 200, 224, 230
Bsc4I	CCNNNNNNNGG	2 cut(s)	473, 931
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	2 cut(s)	502, 582
Bse3DI	GCAATG	1 cut(s)	861
BseBI	CCWGG	1 cut(s)	640
BseDI	CCNNGG	4 cut(s)	39, 354, 478, 639
BseGI	GGATG	7 cut(s)	11, 20, 251, 636, 706, 795, 850
BseLI	CCNNNNNNNGG	2 cut(s)	473, 931
BseMI	GCAATG	1 cut(s)	861
BseMII	CTCAG	3 cut(s)	90, 752, 858
BseNI	ACTGG	2 cut(s)	502, 582
BseRI	GAGGAG	3 cut(s)	83, 202, 205
BseSI	GKGCMC	1 cut(s)	47
BseX3I	CGGCCG	2 cut(s)	172, 315
BseXI	GCAGC	2 cut(s)	270, 1031
Bsh1236I	CGCG	1 cut(s)	320
Bsh1285I	CGRYCG	2 cut(s)	175, 318
BshFI	GGCC	7 cut(s)	45, 174, 272, 317, 466, 477, 588
BsiEI	CGRYCG	2 cut(s)	175, 318
BsiHKCI	CYCGRG	1 cut(s)	394
BsiSI	CCGG	3 cut(s)	57, 83, 186
BsiWI	CGTACG	1 cut(s)	294
BslFI	GGGAC	3 cut(s)	13, 484, 908
BslI	CCNNNNNNNGG	2 cut(s)	473, 931
BsmFI	GGGAC	3 cut(s)	13, 484, 908
BsmI	GAATGC	1 cut(s)	604
BsnI	GGCC	7 cut(s)	45, 174, 272, 317, 466, 477, 588
BsoBI	CYCGRG	1 cut(s)	394
Bsp120I	GGGCCC	1 cut(s)	43
Bsp1286I	GDGCHC	2 cut(s)	47, 89
Bsp143I	GATC	3 cut(s)	290, 326, 1021
Bsp1720I	GCTNAGC	2 cut(s)	76, 831
Bsp19I	CCATGG	2 cut(s)	39, 478
BspANI	GGCC	7 cut(s)	45, 174, 272, 317, 466, 477, 588
BspCNI	CTCAG	3 cut(s)	89, 751, 859
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	2 cut(s)	45, 88
BspMI	ACCTGC	1 cut(s)	166
BspPI	GGATC	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	861
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	502, 582
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	4 cut(s)	39, 354, 478, 639
BssMI	GATC	3 cut(s)	290, 326, 1021
BssSI	CACGAG	1 cut(s)	343
BssT1I	CCWWGG	2 cut(s)	39, 478
Bst2BI	CACGAG	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	640
Bst4CI	ACNGT	2 cut(s)	299, 778
BstC8I	GCNNGC	2 cut(s)	388, 749
BstDEI	CTNAG	5 cut(s)	76, 730, 738, 831, 867
BstDSI	CCRYGG	2 cut(s)	39, 478
BstF5I	GGATG	7 cut(s)	11, 20, 251, 636, 706, 795, 850
BstFNI	CGCG	1 cut(s)	320
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	3 cut(s)	293, 329, 1024
BstMBI	GATC	3 cut(s)	290, 326, 1021
BstMCI	CGRYCG	2 cut(s)	175, 318
BstMWI	GCNNNNNNNGC	7 cut(s)	57, 66, 195, 204, 375, 396, 1041
BstNI	CCWGG	1 cut(s)	640
BstNSI	RCATGY	1 cut(s)	961
BstSCI	CCNGG	2 cut(s)	82, 638
BstSFI	CTRYAG	1 cut(s)	448
BstSLI	GKGCMC	1 cut(s)	47
BstUI	CGCG	1 cut(s)	320
BstV1I	GCAGC	2 cut(s)	270, 1031
BstX2I	RGATCY	2 cut(s)	326, 1021
BstYI	RGATCY	2 cut(s)	326, 1021
BstZI	CGGCCG	2 cut(s)	172, 315
BsuRI	GGCC	7 cut(s)	45, 174, 272, 317, 466, 477, 588
BtgI	CCRYGG	2 cut(s)	39, 478
BtsCI	GGATG	7 cut(s)	11, 20, 251, 636, 706, 795, 850
BtsIMutI	CAGTG	3 cut(s)	405, 589, 783
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	2 cut(s)	388, 749
CciNI	GCGGCCGC	1 cut(s)	315
CfoI	GCGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	3 cut(s)	43, 44, 464
Csp6I	GTAC	2 cut(s)	4, 295
CviAII	CATG	5 cut(s)	40, 479, 601, 931, 958
CviQI	GTAC	2 cut(s)	4, 295
DdeI	CTNAG	5 cut(s)	76, 730, 738, 831, 867
DpnI	GATC	3 cut(s)	292, 328, 1023
DpnII	GATC	3 cut(s)	290, 326, 1021
DraIII	CACNNNGTG	1 cut(s)	461
EaeI	YGGCCR	4 cut(s)	172, 315, 475, 586
EagI	CGGCCG	2 cut(s)	172, 315
EciI	GGCGGA	2 cut(s)	91, 136
EclXI	CGGCCG	2 cut(s)	172, 315
Eco130I	CCWWGG	2 cut(s)	39, 478
Eco24I	GRGCYC	2 cut(s)	47, 89
Eco52I	CGGCCG	2 cut(s)	172, 315
Eco57I	CTGAAG	2 cut(s)	564, 822
Eco88I	CYCGRG	1 cut(s)	394
EcoRI	GAATTC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	638
EcoT14I	CCWWGG	2 cut(s)	39, 478
EcoT22I	ATGCAT	1 cut(s)	606
EcoT38I	GRGCYC	2 cut(s)	47, 89
ErhI	CCWWGG	2 cut(s)	39, 478
FaeI	CATG	5 cut(s)	43, 482, 604, 934, 961
FalI	AAGNNNNNCTT	2 cut(s)	513, 545
FaqI	GGGAC	3 cut(s)	13, 484, 908
FatI	CATG	5 cut(s)	39, 478, 600, 930, 957
FauI	CCCGC	1 cut(s)	74
FblI	GTMKAC	2 cut(s)	108, 991
Fnu4HI	GCNGC	9 cut(s)	190, 193, 196, 281, 284, 315, 318, 1042, 1045
FokI	GGATG	6 cut(s)	7, 238, 643, 713, 782, 837
FriOI	GRGCYC	2 cut(s)	47, 89
Fsp4HI	GCNGC	9 cut(s)	190, 193, 196, 281, 284, 315, 318, 1042, 1045
FspBI	CTAG	3 cut(s)	516, 618, 885
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	9 cut(s)	190, 193, 196, 281, 284, 315, 318, 1042, 1045
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	7 cut(s)	45, 174, 272, 317, 466, 477, 588
HapII	CCGG	3 cut(s)	57, 83, 186
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	5 cut(s)	43, 482, 604, 934, 961
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	3 cut(s)	109, 234, 247
HindII	GTYRAC	3 cut(s)	109, 234, 247
HinfI	GANTC	8 cut(s)	110, 209, 230, 524, 635, 734, 806, 1009
HpaII	CCGG	3 cut(s)	57, 83, 186
HphI	GGTGA	4 cut(s)	55, 88, 214, 716
Hpy166II	GTNNAC	5 cut(s)	109, 234, 247, 683, 992
Hpy188I	TCNGA	3 cut(s)	155, 229, 544
Hpy188III	TCNNGA	3 cut(s)	394, 1006, 1025
Hpy8I	GTNNAC	5 cut(s)	109, 234, 247, 683, 992
Hpy99I	CGWCG	2 cut(s)	110, 173
HpyAV	CCTTC	5 cut(s)	18, 175, 247, 560, 1022
HpyCH4III	ACNGT	2 cut(s)	299, 778
HpyCH4V	TGCA	8 cut(s)	604, 819, 845, 913, 953, 976, 1035, 1047
HpyF10VI	GCNNNNNNNGC	7 cut(s)	57, 66, 195, 204, 375, 396, 1041
HpyF3I	CTNAG	5 cut(s)	76, 730, 738, 831, 867
Hsp92II	CATG	5 cut(s)	43, 482, 604, 934, 961
HspAI	GCGC	1 cut(s)	198
Kzo9I	GATC	3 cut(s)	290, 326, 1021
LmnI	GCTCC	4 cut(s)	85, 92, 122, 676
Lsp1109I	GCAGC	2 cut(s)	270, 1031
LweI	GCATC	1 cut(s)	69
MaeI	CTAG	3 cut(s)	516, 618, 885
MaeIII	GTNAC	2 cut(s)	427, 704
MalI	GATC	3 cut(s)	292, 328, 1023
MboI	GATC	3 cut(s)	290, 326, 1021
MboII	GAAGA	7 cut(s)	321, 324, 327, 342, 815, 891, 1004
MflI	RGATCY	2 cut(s)	326, 1021
MhlI	GDGCHC	2 cut(s)	47, 89
MlsI	TGGCCA	2 cut(s)	477, 588
MluCI	AATT	2 cut(s)	140, 652
MluNI	TGGCCA	2 cut(s)	477, 588
MlyI	GAGTC	4 cut(s)	104, 203, 239, 629
MmeI	TCCRAC	4 cut(s)	178, 279, 698, 942
Mox20I	TGGCCA	2 cut(s)	477, 588
Mph1103I	ATGCAT	1 cut(s)	606
MscI	TGGCCA	2 cut(s)	477, 588
MseI	TTAA	2 cut(s)	714, 902
Msp20I	TGGCCA	2 cut(s)	477, 588
MspA1I	CMGCKG	2 cut(s)	283, 386
MspI	CCGG	3 cut(s)	57, 83, 186
MspR9I	CCNGG	2 cut(s)	84, 640
Mva1269I	GAATGC	1 cut(s)	604
MvaI	CCWGG	1 cut(s)	640
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	7 cut(s)	57, 66, 195, 204, 375, 396, 1041
NciI	CCSGG	1 cut(s)	84
NcoI	CCATGG	2 cut(s)	39, 478
NdeII	GATC	3 cut(s)	290, 326, 1021
NlaIII	CATG	5 cut(s)	43, 482, 604, 934, 961
NlaIV	GGNNCC	2 cut(s)	45, 88
NmeAIII	GCCGAG	2 cut(s)	157, 335
NmuCI	GTSAC	1 cut(s)	704
NotI	GCGGCCGC	1 cut(s)	315
NsiI	ATGCAT	1 cut(s)	606
NspI	RCATGY	1 cut(s)	961
PciI	ACATGT	1 cut(s)	957
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PctI	GAATGC	1 cut(s)	604
PfeI	GAWTC	4 cut(s)	524, 734, 806, 1009
Pfl23II	CGTACG	1 cut(s)	294
PflFI	GACNNNGTC	2 cut(s)	113, 920
PkrI	GCNGC	9 cut(s)	191, 194, 197, 282, 285, 316, 319, 1043, 1046
PleI	GAGTC	4 cut(s)	104, 203, 238, 629
PpsI	GAGTC	4 cut(s)	104, 203, 238, 629
PscI	ACATGT	1 cut(s)	957
Psp6I	CCWGG	1 cut(s)	638
PspGI	CCWGG	1 cut(s)	638
PspLI	CGTACG	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	45, 88
PspOMI	GGGCCC	1 cut(s)	43
PspPI	GGNCC	3 cut(s)	43, 44, 464
PsuI	RGATCY	2 cut(s)	326, 1021
PsyI	GACNNNGTC	2 cut(s)	113, 920
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	2 cut(s)	5, 296
RsaNI	GTAC	2 cut(s)	4, 295
SalI	GTCGAC	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	714, 902
SatI	GCNGC	9 cut(s)	190, 193, 196, 281, 284, 315, 318, 1042, 1045
Sau3AI	GATC	3 cut(s)	290, 326, 1021
Sau96I	GGNCC	3 cut(s)	43, 44, 464
SchI	GAGTC	4 cut(s)	104, 203, 239, 629
ScrFI	CCNGG	2 cut(s)	84, 640
SduI	GDGCHC	2 cut(s)	47, 89
SfaNI	GCATC	1 cut(s)	69
SfcI	CTRYAG	1 cut(s)	448
Sse9I	AATT	2 cut(s)	140, 652
SspMI	CTAG	3 cut(s)	516, 618, 885
StyD4I	CCNGG	2 cut(s)	82, 638
StyI	CCWWGG	2 cut(s)	39, 478
TaaI	ACNGT	2 cut(s)	299, 778
TaqI	TCGA	2 cut(s)	108, 564
TasI	AATT	2 cut(s)	140, 652
TauI	GCSGC	7 cut(s)	192, 195, 198, 283, 317, 320, 1044
TfiI	GAWTC	4 cut(s)	524, 734, 806, 1009
Tru1I	TTAA	2 cut(s)	714, 902
Tru9I	TTAA	2 cut(s)	714, 902
TscAI	CASTG	3 cut(s)	412, 589, 783
TseFI	GTSAC	1 cut(s)	704
TseI	GCWGC	2 cut(s)	283, 1044
Tsp45I	GTSAC	1 cut(s)	704
TspGWI	ACGGA	2 cut(s)	103, 815
TspRI	CASTG	3 cut(s)	412, 589, 783
Tth111I	GACNNNGTC	2 cut(s)	113, 920
XapI	RAATTY	1 cut(s)	140
XceI	RCATGY	1 cut(s)	961
XmiI	GTMKAC	2 cut(s)	108, 991
XspI	CTAG	3 cut(s)	516, 618, 885
Zsp2I	ATGCAT	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.